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Search of human proteins with 41393599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41393599 coproporphyrinogen oxidase [Homo sapiens]
(454 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41393599 coproporphyrinogen oxidase [Homo sapiens] 952 0.0
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 40 0.004
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 37 0.028
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 37 0.028
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.028
gi|239755004 PREDICTED: hypothetical protein [Homo sapiens] 37 0.048
gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo ... 36 0.063
gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo ... 36 0.063
gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo ... 36 0.063
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ... 35 0.14
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ... 35 0.14
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 34 0.24
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 34 0.24
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 34 0.31
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|113423529 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|239754537 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239749102 PREDICTED: hypothetical protein XP_002346913 [Homo ... 32 1.2
gi|239743131 PREDICTED: hypothetical protein XP_002342743 [Homo ... 32 1.2
gi|239508788 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|119395750 keratin 1 [Homo sapiens] 32 1.6
gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1 ... 32 1.6
gi|89257348 homeo box HB9 [Homo sapiens] 32 1.6
gi|73476377 LBXCOR1 homolog [Homo sapiens] 31 2.0
gi|126090909 engrailed homeobox 1 [Homo sapiens] 31 2.6
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 31 2.6
>gi|41393599 coproporphyrinogen oxidase [Homo sapiens]
Length = 454
Score = 952 bits (2461), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MALQLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSR 60
MALQLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSR
Sbjct: 1 MALQLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSR 60
Query: 61 GLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEE 120
GLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEE
Sbjct: 61 GLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEE 120
Query: 121 DELAHRCSSFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDR 180
DELAHRCSSFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDR
Sbjct: 121 DELAHRCSSFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDR 180
Query: 181 WERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCA 240
WERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCA
Sbjct: 181 WERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCA 240
Query: 241 MGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTL 300
MGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTL
Sbjct: 241 MGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTL 300
Query: 301 KEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARA 360
KEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARA
Sbjct: 301 KEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARA 360
Query: 361 VVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMS 420
VVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMS
Sbjct: 361 VVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMS 420
Query: 421 LPLTARWEYMHSPSENSKEAEILEVLRHPRDWVR 454
LPLTARWEYMHSPSENSKEAEILEVLRHPRDWVR
Sbjct: 421 LPLTARWEYMHSPSENSKEAEILEVLRHPRDWVR 454
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 40.0 bits (92), Expect = 0.004
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 9 SSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAA---GRVCRPPGPAGTEQSRGLGHG 65
S G C LV R G PRA GGGG +A S A G PPG G G G
Sbjct: 152 SDGRCELVLRAGVADPRASPGAGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSG 211
Query: 66 STSRGG 71
S+ GG
Sbjct: 212 SSGGGG 217
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 37.4 bits (85), Expect = 0.028
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 22 GGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTGLAAA 81
G R ++ GG G W Q G VC G + RG G G P G+GL
Sbjct: 48 GVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGD 107
Query: 82 LAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEEDELAHRCSSFMAPPVTDLGEL 141
G G + G R E +P SG+ P E C + PP E+
Sbjct: 108 GGGCGGGGSGG-GGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPAL--PPGWKKEEV 164
Query: 142 RRRPG 146
R+ G
Sbjct: 165 IRKSG 169
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 37.4 bits (85), Expect = 0.028
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 22 GGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTGLAAA 81
G R ++ GG G W Q G VC G + RG G G P G+GL
Sbjct: 48 GVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGD 107
Query: 82 LAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEEDELAHRCSSFMAPPVTDLGEL 141
G G + G R E +P SG+ P E C + PP E+
Sbjct: 108 GGGCGGGGSGG-GGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPAL--PPGWKKEEV 164
Query: 142 RRRPG 146
R+ G
Sbjct: 165 IRKSG 169
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.4 bits (85), Expect = 0.028
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 31 GGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTG--LAAALAGLVG- 87
GGGG + A G GP GT+ G G+G+ + GG + G G L A AG +
Sbjct: 1314 GGGGAGSLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGGLLGADFAGDLDY 1373
Query: 88 --LATAAFGHVQRAEMLPKTSGTRATSLGRP 116
LA +QR +L + T G+P
Sbjct: 1374 NELAVRVSESMQRQGLLQGMAYTVQGPPGQP 1404
>gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.048
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 9 SSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTS 68
SSG C L R CGG ++ G GG AW + P G A G+ H +S
Sbjct: 77 SSGGCALTRRAACGGRGGGTRAGQGGRGAWGE--------APVGSAALSSPTGVSHLLSS 128
Query: 69 RGGPWVGTGLAAALAGLVGLAT------AAFGHVQRAEML 102
+ G G + G++ LA A G+V+ +L
Sbjct: 129 Q---LRGQGALESCGGILPLAAQRRSMDKASGYVRACPLL 165
>gi|239756539 PREDICTED: hypothetical protein XP_002344929 [Homo
sapiens]
Length = 223
Score = 36.2 bits (82), Expect = 0.063
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 4 QLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRA--WSQRSAAGRVCRPPGPAGTEQS 59
QL L G CW++ G G CGG G RA W Q AG V R P A +E++
Sbjct: 67 QLLLLLRGQCWILVGHGAG-------CGGRGRRAGEWIQGENAGLVTRTPSAARSERN 117
>gi|239751144 PREDICTED: hypothetical protein XP_002347730 [Homo
sapiens]
Length = 223
Score = 36.2 bits (82), Expect = 0.063
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 4 QLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRA--WSQRSAAGRVCRPPGPAGTEQS 59
QL L G CW++ G G CGG G RA W Q AG V R P A +E++
Sbjct: 67 QLLLLLRGQCWILVGHGAG-------CGGRGRRAGEWIQGENAGLVTRTPSAARSERN 117
>gi|239745508 PREDICTED: hypothetical protein XP_002343507 [Homo
sapiens]
Length = 223
Score = 36.2 bits (82), Expect = 0.063
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 4 QLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRA--WSQRSAAGRVCRPPGPAGTEQS 59
QL L G CW++ G G CGG G RA W Q AG V R P A +E++
Sbjct: 67 QLLLLLRGQCWILVGHGAG-------CGGRGRRAGEWIQGENAGLVTRTPSAARSERN 117
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.4 bits (80), Expect = 0.11
Identities = 56/227 (24%), Positives = 76/227 (33%), Gaps = 60/227 (26%)
Query: 18 RGGCGGPRAWSQCGGGGLRAWSQRSAAGRVC-----------------------RPPGP- 53
RG GPRA + GG RA ++R +C PP P
Sbjct: 157 RGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR 216
Query: 54 ------AGTEQSRGLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSG 107
G +R GS R P ++ LAG VG G VQR +S
Sbjct: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSS- 275
Query: 108 TRATSLGRPEEEED--------------------ELAHRCSSFMAPPVTDLGELRRRPGD 147
+TS GRP E +AH +A LG +R+P
Sbjct: 276 -HSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 148 MK--TKMELLILETQ-AQVCQALAQVDGGANFSVDRWERKEGGGGIS 191
+K + +L E + + +AL G + W R E GG S
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGS-----ELWARAERHGGSS 376
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 35.4 bits (80), Expect = 0.11
Identities = 56/227 (24%), Positives = 76/227 (33%), Gaps = 60/227 (26%)
Query: 18 RGGCGGPRAWSQCGGGGLRAWSQRSAAGRVC-----------------------RPPGP- 53
RG GPRA + GG RA ++R +C PP P
Sbjct: 157 RGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR 216
Query: 54 ------AGTEQSRGLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSG 107
G +R GS R P ++ LAG VG G VQR +S
Sbjct: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSS- 275
Query: 108 TRATSLGRPEEEED--------------------ELAHRCSSFMAPPVTDLGELRRRPGD 147
+TS GRP E +AH +A LG +R+P
Sbjct: 276 -HSTSGGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 148 MK--TKMELLILETQ-AQVCQALAQVDGGANFSVDRWERKEGGGGIS 191
+K + +L E + + +AL G + W R E GG S
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGS-----ELWARAERHGGSS 376
>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
sapiens]
Length = 443
Score = 35.0 bits (79), Expect = 0.14
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 9 SSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPP--GPAGTEQSRGLGHGS 66
SSG C L R CGG ++ G GG AW + P P +E+ HG
Sbjct: 77 SSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPGCSEEV----HGQ 132
Query: 67 TSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEE---EEDEL 123
S P G + LA VG E+ P+ A S+ EE ED +
Sbjct: 133 RSSFRP----GWSRVLAKEVG-----------GELKPEAPSIGAKSIEEGEEVLGAEDSV 177
Query: 124 AHR 126
R
Sbjct: 178 GQR 180
>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.14
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 9 SSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPP--GPAGTEQSRGLGHGS 66
SSG C L R CGG ++ G GG AW + P P +E+ HG
Sbjct: 77 SSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTASPGCSEEV----HGQ 132
Query: 67 TSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEE---EEDEL 123
S P G + LA VG E+ P+ A S+ EE ED +
Sbjct: 133 RSSFRP----GWSRVLAKEVG-----------GELKPEAPSIGAKSIEEGEEVLGAEDSV 177
Query: 124 AHR 126
R
Sbjct: 178 GQR 180
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 10 SGPCWLVARGGCG----GPRAWSQCGGGGLRAWSQRSAAGRVCRP-----------PGPA 54
+ PC + GCG GPR+W+ CG W Q R CR PGP
Sbjct: 221 TAPCPPQRKRGCGAARRGPRSWT-CG-----CWGQFEHYRRACRRCRRGCRAWRACPGPL 274
Query: 55 GTEQSRG--LGHGSTSRGGP 72
+S G LGHG GP
Sbjct: 275 SRGRSPGPVLGHGPLGSRGP 294
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 10 SGPCWLVARGGCG----GPRAWSQCGGGGLRAWSQRSAAGRVCRP-----------PGPA 54
+ PC + GCG GPR+W+ CG W Q R CR PGP
Sbjct: 221 TAPCPPQRKRGCGAARRGPRSWT-CG-----CWGQFEHYRRACRRCRRGCRAWRACPGPL 274
Query: 55 GTEQSRG--LGHGSTSRGGP 72
+S G LGHG GP
Sbjct: 275 SRGRSPGPVLGHGPLGSRGP 294
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 33.9 bits (76), Expect = 0.31
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 33/103 (32%)
Query: 6 GRLSSGPCWLVA-----RGGC-----------GG--PRAWSQCGGG----------GLRA 37
G SG CW A GGC GG P A Q GGG G+ +
Sbjct: 1643 GSQVSGSCWTGAGAVDQAGGCSKPGFEDQAIGGGFWPGAGDQTGGGSRPGSEDQSSGIGS 1702
Query: 38 WSQRSAAGRVCRPPGPAGTEQSRG---LGHGSTSRGGPWVGTG 77
W A G+V P +QS G G G+ S G W+G G
Sbjct: 1703 WGV--AGGQVLGGARPGPADQSSGGSWAGTGNQSSGRSWIGPG 1743
Score = 29.6 bits (65), Expect = 5.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 23 GPRAWSQCGG---GGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGT 76
G +W+ GG GG + ++GR + SR LGH S GG W GT
Sbjct: 1417 GEGSWAGAGGQASGGSMLGPEDQSSGRSWADTADQASGGSR-LGHVDQSSGGAWAGT 1472
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.53
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 6 GRLSSGPCWLVARGGCGGPR----AWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRG 61
G L SG R G G R A S GG L+ W ++S CRPPGP G R
Sbjct: 41 GGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSG----CRPPGPEGWAGGRK 96
Query: 62 L 62
L
Sbjct: 97 L 97
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.53
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 6 GRLSSGPCWLVARGGCGGPR----AWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRG 61
G L SG R G G R A S GG L+ W ++S CRPPGP G R
Sbjct: 41 GGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSG----CRPPGPEGWAGGRK 96
Query: 62 L 62
L
Sbjct: 97 L 97
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.53
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 6 GRLSSGPCWLVARGGCGGPR----AWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRG 61
G L SG R G G R A S GG L+ W ++S CRPPGP G R
Sbjct: 41 GGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGWGRKSG----CRPPGPEGWAGGRK 96
Query: 62 L 62
L
Sbjct: 97 L 97
>gi|113423529 PREDICTED: hypothetical protein [Homo sapiens]
Length = 276
Score = 32.3 bits (72), Expect = 0.91
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 18 RGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGG 71
RGG G A GGGG ++ + A R+ R P PA + GLG G GG
Sbjct: 49 RGGEGRREAG---GGGGRKSREGAACARRLIRCPSPAPPGGAGGLGEGRQDGGG 99
>gi|239754537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 GGCGGPRAWSQCGGGGL---RAWSQRSAAG-RVCRPPGPAG 55
GG GPR SQC GGG +W + G R C PG G
Sbjct: 27 GGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
>gi|239749102 PREDICTED: hypothetical protein XP_002346913 [Homo
sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 GGCGGPRAWSQCGGGGL---RAWSQRSAAG-RVCRPPGPAG 55
GG GPR SQC GGG +W + G R C PG G
Sbjct: 27 GGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
>gi|239743131 PREDICTED: hypothetical protein XP_002342743 [Homo
sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 GGCGGPRAWSQCGGGGL---RAWSQRSAAG-RVCRPPGPAG 55
GG GPR SQC GGG +W + G R C PG G
Sbjct: 27 GGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
>gi|239508788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 19 GGCGGPRAWSQCGGGGL---RAWSQRSAAG-RVCRPPGPAG 55
GG GPR SQC GGG +W + G R C PG G
Sbjct: 27 GGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 20 GCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTG 77
G GG S GGGG ++ S++G G G S G G G S GG G G
Sbjct: 560 GSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRG 617
>gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1
[Homo sapiens]
Length = 925
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 30 CGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTGLAAAL 82
C GGG R GR R GPAG + RG H + + G P L A +
Sbjct: 6 CAGGGSRG----GEGGRAPRE-GPAGNGRDRGRSHAAEAPGDPQAAASLLAPM 53
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 31.6 bits (70), Expect = 1.6
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 12/162 (7%)
Query: 19 GGCGGPRAWSQCGGGGLRAWSQRSAA-GRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTG 77
GG GGP + G A + +AA G + P G + GL + G P G
Sbjct: 108 GGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYS 167
Query: 78 LAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEEDE-LAHRCSSFMAPPVT 136
AAA A L G A + + LG + D+ L + + P +
Sbjct: 168 AAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMP 227
Query: 137 D---------LGELRRRPGDMKTKMELLILETQAQVCQALAQ 169
D LG+ RRP T +LL LE Q ++ + L++
Sbjct: 228 DFNSQAQSNLLGKC-RRPRTAFTSQQLLELEHQFKLNKYLSR 268
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 31.2 bits (69), Expect = 2.0
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 22 GGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLG-----HGSTSRGGPWVGT 76
GG R ++ G S R PPGP RGLG G GGP G
Sbjct: 264 GGTRCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLATGASGPAGPGGPGGGA 323
Query: 77 GLAAALAGLVGLATAAFGHVQR--AEMLPKTSGTRATSLGRPEEEEDELAHRCSSFMAPP 134
G+ + ++ + + FG +Q+ + P G T+ G +++D P
Sbjct: 324 GVRS--YPVIPVPSKGFGLLQKLPPPLFPHPYGF-PTAFGLCPKKDD------------P 368
Query: 135 VTDLGELRRRPG 146
V GE + PG
Sbjct: 369 VLGAGEPKGGPG 380
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 30.8 bits (68), Expect = 2.6
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 17 ARGGCGG------PRAWSQCGGGGLRAWSQRS--AAGRVCRPP---GPAGTEQSRGLGHG 65
ARGG GG R + G + R+ AA +C P GP Q G G
Sbjct: 132 ARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAG 191
Query: 66 STSRGGPWVGTGLAAALAGLVGLATAA 92
++ G P AAA A AA
Sbjct: 192 ASKAGNPAAAAAAAAAAVAAAAAAAAA 218
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 2.6
Identities = 34/130 (26%), Positives = 43/130 (33%), Gaps = 31/130 (23%)
Query: 18 RGGCGGPRAWSQCGGGGLRAWSQRSAAGRVC-----------------------RPPGP- 53
R GPRA + GG RA ++R +C PP P
Sbjct: 157 RASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR 216
Query: 54 ------AGTEQSRGLGHGSTSRGGPWVGTGLAAALAGLVGLATAAFGHVQRAEM-LPKTS 106
G +R GS R P ++ LAG VG G VQR P +
Sbjct: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSH 276
Query: 107 GTRATSLGRP 116
T A +L P
Sbjct: 277 STGARTLPTP 286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,679,896
Number of Sequences: 37866
Number of extensions: 1060593
Number of successful extensions: 3412
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 3346
Number of HSP's gapped (non-prelim): 121
length of query: 454
length of database: 18,247,518
effective HSP length: 106
effective length of query: 348
effective length of database: 14,233,722
effective search space: 4953335256
effective search space used: 4953335256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.