Guide to the Human Genome
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Name: LOC100290716 Sequence: fasta or formatted (223aa) NCBI GI: 239751144
Description:

PREDICTED: hypothetical protein XP_002347730

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         31           2
 C cysteine            2.2          5           1
 D aspartate           4.0          9           2
 E glutamate           5.8         13           2
 F phenylalanine       0.9          2           2
 G glycine            12.1         27           2
 H histidine           1.8          4           1
 I isoleucine          1.3          3           1
 K lysine              0.9          2           1
 L leucine            12.6         28           5
 M methionine          0.4          1           1
 N asparagine          2.7          6           1
 P proline             8.5         19           3
 Q glutamine           4.0          9           3
 R arginine           11.2         25           3
 S serine              7.6         17           1
 T threonine           3.1          7           2
 V valine              4.9         11           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347730 
LOC100291943          1.000   PREDICTED: hypothetical protein XP_002344929 
LOC100288794          1.000   PREDICTED: hypothetical protein XP_002343507 
LOC100291206          0.033   PREDICTED: hypothetical protein XP_002347014 
WTIP                  0.028   Wilms tumor 1 interacting protein 
FLJ37078              0.028   hypothetical protein LOC222183 
CPOX                  0.026   coproporphyrinogen oxidase 
LOC728767             0.026   PREDICTED: hypothetical protein 
LOC728767             0.026   PREDICTED: hypothetical protein 
FOXA2                 0.023   forkhead box A2 isoform 2 
LOC100133305          0.023   PREDICTED: hypothetical protein 
LOC100133305          0.023   PREDICTED: hypothetical protein 
FOXA2                 0.023   forkhead box A2 isoform 1 
MRI1                  0.023   translation initiation factor eIF-2B subunit alpha/b...
DNM1                  0.021   dynamin 1 isoform 2 
DNM1                  0.021   dynamin 1 isoform 1 
LOC100292172          0.021   PREDICTED: hypothetical protein 
LOC643153             0.021   PREDICTED: hypothetical protein 
LOC643153             0.021   PREDICTED: hypothetical protein 
LOC643153             0.021   PREDICTED: hypothetical protein 
SRRM1                 0.021   serine/arginine repetitive matrix 1 
LOC646509             0.019   PREDICTED: hypothetical protein 
GLCCI1                0.019   glucocorticoid induced transcript 1 
COL1A1                0.016   alpha 1 type I collagen preproprotein 
LOC100131311          0.016   PREDICTED: hypothetical protein 
LOC100287063          0.016   PREDICTED: hypothetical protein 
LOC100131311          0.016   PREDICTED: hypothetical protein 
LOC100131311          0.016   PREDICTED: hypothetical protein 
GYLTL1B               0.016   glycosyltransferase-like 1B 
PRH2                  0.016   proline-rich protein HaeIII subfamily 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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