Guide to the Human Genome
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Name: SLC12A6 Sequence: fasta or formatted (1135aa) NCBI GI: 110224458
Description:

solute carrier family 12, member 6 isoform e

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [1150aa] solute carrier family 12, member 6 isoform a
alt prot [1091aa] solute carrier family 12, member 6 isoform c
alt prot [1091aa] solute carrier family 12, member 6 isoform c
alt prot [1141aa] solute carrier family 12, member 6 isoform d
alt prot [1099aa] solute carrier family 12, member 6 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         88           3
 C cysteine            1.7         19           4
 D aspartate           3.7         42           2
 E glutamate           6.0         68           3
 F phenylalanine       4.8         54           2
 G glycine             7.0         79           3
 H histidine           2.3         26           1
 I isoleucine          6.3         71           2
 K lysine              4.8         55           3
 L leucine            10.8        123           3
 M methionine          4.0         45           2
 N asparagine          4.2         48           2
 P proline             4.1         46           2
 Q glutamine           2.6         29           1
 R arginine            4.6         52           2
 S serine              7.8         88           3
 T threonine           6.0         68           3
 V valine              7.4         84           2
 W tryptophan          1.6         18           2
 Y tyrosine            2.8         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 12, member 6 isoform e 
SLC12A6               0.996   solute carrier family 12, member 6 isoform a 
SLC12A6               0.987   solute carrier family 12, member 6 isoform d 
SLC12A6               0.945   solute carrier family 12, member 6 isoform c 
SLC12A6               0.945   solute carrier family 12, member 6 isoform c 
SLC12A6               0.922   solute carrier family 12, member 6 isoform b 
SLC12A4               0.734   solute carrier family 12, member 4 isoform a 
SLC12A4               0.733   solute carrier family 12, member 4 isoform e 
SLC12A4               0.733   solute carrier family 12, member 4 isoform d 
SLC12A4               0.726   solute carrier family 12, member 4 isoform b 
SLC12A4               0.722   solute carrier family 12, member 4 isoform c 
SLC12A5               0.685   solute carrier family 12 (potassium-chloride transp...
SLC12A5               0.684   solute carrier family 12 (potassium-chloride transpo...
SLC12A7               0.666   solute carrier family 12 (potassium/chloride transp...
SLC12A3               0.096   solute carrier family 12, member 3 isoform 3 
SLC12A3               0.094   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.094   solute carrier family 12, member 3 isoform 1 
SLC12A2               0.089   solute carrier family 12 (sodium/potassium/chloride t...
SLC12A1               0.083   sodium potassium chloride cotransporter 2 
SLC12A9               0.076   solute carrier family 12 (potassium/chloride transpo...
SLC12A8               0.035   solute carrier family 12, member 8 
SLC7A2                0.010   solute carrier family 7, member 2 isoform 1 
SLC7A2                0.009   solute carrier family 7, member 2 isoform 2 
SLC7A1                0.007   solute carrier family 7 (cationic amino acid transpor...
SLC7A10               0.005   solute carrier family 7, member 10 
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
MUC17                 0.005   mucin 17 
SLC7A14               0.005   solute carrier family 7 (cationic amino acid transp...
ARHGAP9               0.005   Rho GTPase activating protein 9 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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