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Search of human proteins with 41349466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41349466 PR domain containing 11 [Homo sapiens]
(511 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41349466 PR domain containing 11 [Homo sapiens] 1046 0.0
gi|147905620 PR domain containing 9 [Homo sapiens] 157 3e-38
gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens] 155 1e-37
gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens] 100 4e-21
gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens] 98 2e-20
gi|41349474 PR domain containing 4 [Homo sapiens] 90 6e-18
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 87 5e-17
gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens] 85 1e-16
gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens] 85 1e-16
gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens] 85 1e-16
gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens] 85 1e-16
gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens] 82 1e-15
gi|210031233 PR domain containing 6 [Homo sapiens] 75 2e-13
gi|13375636 PR domain containing 14 [Homo sapiens] 70 5e-12
gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [H... 66 9e-11
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 64 4e-10
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 64 4e-10
gi|208022698 retinoblastoma protein-binding zinc finger protein ... 62 1e-09
gi|15042949 PR domain containing 12 [Homo sapiens] 49 8e-06
gi|150378478 PR domain containing 8 [Homo sapiens] 45 2e-04
gi|150378439 PR domain containing 8 [Homo sapiens] 45 2e-04
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 44 3e-04
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 44 3e-04
gi|41349476 PR domain containing 5 [Homo sapiens] 44 3e-04
gi|157364947 ecotropic viral integration site 1 isoform a [Homo ... 44 5e-04
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 43 8e-04
gi|124107614 PR domain containing 13 [Homo sapiens] 43 8e-04
gi|13376064 zinc finger protein 408 [Homo sapiens] 37 0.043
gi|19743907 RAR-related orphan receptor B [Homo sapiens] 36 0.073
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 33 0.62
>gi|41349466 PR domain containing 11 [Homo sapiens]
Length = 511
Score = 1046 bits (2705), Expect = 0.0
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MLKMAEPIASLMIVECRACLRCSPLFLYQREKDRMTENMKECLAQTNAAVGDMVTVVKTE 60
MLKMAEPIASLMIVECRACLRCSPLFLYQREKDRMTENMKECLAQTNAAVGDMVTVVKTE
Sbjct: 1 MLKMAEPIASLMIVECRACLRCSPLFLYQREKDRMTENMKECLAQTNAAVGDMVTVVKTE 60
Query: 61 VCSPLRDQEYGQPCSRRPDSSAMEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDE 120
VCSPLRDQEYGQPCSRRPDSSAMEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDE
Sbjct: 61 VCSPLRDQEYGQPCSRRPDSSAMEVEPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDE 120
Query: 121 CPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYE 180
CPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYE
Sbjct: 121 CPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYE 180
Query: 181 GQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSER 240
GQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSER
Sbjct: 181 GQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSER 240
Query: 241 IYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPED 300
IYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPED
Sbjct: 241 IYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPED 300
Query: 301 LRGPIHLSVLRQGKSPYKRGFDEGDVHPQAKKKKIDLIFKDVLEASLESAKVEAHQLALS 360
LRGPIHLSVLRQGKSPYKRGFDEGDVHPQAKKKKIDLIFKDVLEASLESAKVEAHQLALS
Sbjct: 301 LRGPIHLSVLRQGKSPYKRGFDEGDVHPQAKKKKIDLIFKDVLEASLESAKVEAHQLALS 360
Query: 361 TSLVIRKVPKYQDDAYSQCATTMTHGVQNIGQTQGEGDWKVPQGVSKEPGQLEDEEEEPS 420
TSLVIRKVPKYQDDAYSQCATTMTHGVQNIGQTQGEGDWKVPQGVSKEPGQLEDEEEEPS
Sbjct: 361 TSLVIRKVPKYQDDAYSQCATTMTHGVQNIGQTQGEGDWKVPQGVSKEPGQLEDEEEEPS 420
Query: 421 SFKADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKLPEPPVLPPQV 480
SFKADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKLPEPPVLPPQV
Sbjct: 421 SFKADSPAEASLASDPHELPTTSFCPNCIRLKKKVRELQAELDMLKSGKLPEPPVLPPQV 480
Query: 481 LELPEFSDPAGKLVWMRLLSEGRVRSGLCGG 511
LELPEFSDPAGKLVWMRLLSEGRVRSGLCGG
Sbjct: 481 LELPEFSDPAGKLVWMRLLSEGRVRSGLCGG 511
>gi|147905620 PR domain containing 9 [Homo sapiens]
Length = 894
Score = 157 bits (396), Expect = 3e-38
Identities = 74/168 (44%), Positives = 110/168 (65%), Gaps = 3/168 (1%)
Query: 103 QQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESD 162
Q D+ +CE CQ +F+D C HGPP FV D+ V G P+R+AL++P G+ + ++
Sbjct: 198 QDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAG 257
Query: 163 VRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVDKNNRYKSIDGSDETKANWMR 219
+ NE +P G FGPYEG+I+ +++A +SWLI N Y+ +DG D++ ANWMR
Sbjct: 258 LGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMR 317
Query: 220 YVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
YV +R++ EQNL+AFQ+ +I++R CR IRPG L VWY ++Y + L
Sbjct: 318 YVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWYGDEYGQEL 365
>gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens]
Length = 492
Score = 155 bits (391), Expect = 1e-37
Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 103 QQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESD 162
Q D+ +CE CQ +F+D C HGPP FV D+ V G P+R+AL++P G+ + ++
Sbjct: 198 QDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAG 257
Query: 163 VRCVNEV--IPKGHIFGPYEGQISTQDKSAGF-FSWLIVDKNNRYKSIDGSDETKANWMR 219
+ NE +P G FGPYEG+I+ +++A +SWLI N Y+ +DG D++ ANWMR
Sbjct: 258 LGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR 317
Query: 220 YVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
YV +R++ EQNL+AFQ+ +I++R CR IRPG L VW ++Y + L
Sbjct: 318 YVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWSGDEYGQEL 365
>gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens]
Length = 1178
Score = 100 bits (248), Expect = 4e-21
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 103 QQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESD 162
+++ F +CE C +Y ECP GP V V D+ V RA ++P +E+ + G
Sbjct: 44 EEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVL----SRARSSLPPNLEIRRLEDGAEG 99
Query: 163 VRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVV 222
V + +++ + FGP+E + + + F + K+ D S+E NWM V
Sbjct: 100 VFAITQLVKRTQ-FGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVR 158
Query: 223 ISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
+ E QNL A+QH +YF RDI PG LRVWY+ Y K++
Sbjct: 159 PAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAAFYAKKM 203
>gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens]
Length = 171
Score = 97.8 bits (242), Expect = 2e-20
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 113 CQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEV--I 170
CQ +F+D C HGPP FV D+ V G P+R+AL++P G+ + ++ + NE +
Sbjct: 2 CQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDL 61
Query: 171 PKGHIFGPYEGQISTQDKSAGF-FSWLIVDKNNRYKSIDGSDETKANWMR 219
P G FGPYEG+I+ +++A +SWLI N Y+ +DG D++ ANWMR
Sbjct: 62 PLGLHFGPYEGRITEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMR 111
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 89.7 bits (221), Expect = 6e-18
Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 109 FCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNE 168
+C C + +CP HGP FV DTP I RA L++P+ + + + G E
Sbjct: 376 WCTLCDRAYPSDCPEHGPVTFVPDTP----IESRARLSLPKQLVLRQSIVGAEVGVWTGE 431
Query: 169 VIPKGHIFGPYEGQISTQ-------DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYV 221
IP FGP GQ S DK+ W I I +DE + NWM +V
Sbjct: 432 TIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHI-WKIYHNGVLEFCIITTDENECNWMMFV 490
Query: 222 VISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIH 276
+R EQNL+A+ H +I+F +DI P L +YS DY +++ +H
Sbjct: 491 RKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPEHPDVH 545
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 86.7 bits (213), Expect = 5e-17
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 132 DTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVN-EVIPKGHIFGPYEGQISTQD--- 187
D+ G +A ++P+ + T+ E + ++ E IPKG FGP G+I T D
Sbjct: 68 DSGADGGTSVQAEASLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVP 127
Query: 188 KSAGF-FSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRAC 246
K+A + W I + + IDG +E K+NWMRYV + REQNL A Q+ IYF
Sbjct: 128 KNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTI 187
Query: 247 RDIRPGEWLRVWYSEDYMKRLH-SMSQETIHRNLARGEKRLQREKSEQVLDNPEDL--RG 303
+ I + L VWY D+ +RLH E NL + + L++ +E+ P+++ R
Sbjct: 188 KPIPANQELLVWYCRDFAERLHYPYPGELTMMNLTQTQSSLKQPSTEKNELCPKNVPKRE 247
Query: 304 PIHLSVLRQGKSPYK-RGFDEGDVHPQAKKKKID 336
+L+ +P K + ++ P +K +D
Sbjct: 248 YSVKEILKLDSNPSKGKDLYRSNISPLTSEKDLD 281
>gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens]
Length = 1156
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 36/250 (14%)
Query: 99 PKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTS 158
P+ F D W CE C CP HGP + + PV RA ++P + + +
Sbjct: 165 PRPFDPHDLW-CEECNNAHASVCPKHGPLHPIPNRPVLT----RARASLPLVLYIDRFLG 219
Query: 159 GESDVRCVNEVIPKGHIFGPYEGQI--STQDKSAGFFSWLIVDKNNRYKS-------IDG 209
G R IPK FGP EG + ++ K + +DK +R + +
Sbjct: 220 GVFSKRR----IPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFEL 275
Query: 210 SDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM----K 265
SDET NWM +V ++ EQNL+A+Q+ +Y+ +++ P + L+VWY+ Y +
Sbjct: 276 SDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQ 335
Query: 266 RLHSMSQETIHRNLARGEKR-----------LQREKSEQVLDNPEDLRGPIHLSVLRQGK 314
++H +S+E R + R +++ + E+ +Q L N D + + +G+
Sbjct: 336 KIHDISEE--ERKVLREQEKNWPCYECNRRFISSEQLQQHL-NSHDEKLDVFSRTRGRGR 392
Query: 315 SPYKRGFDEG 324
KR F G
Sbjct: 393 GRGKRRFGPG 402
>gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens]
Length = 1023
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 36/250 (14%)
Query: 99 PKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTS 158
P+ F D W CE C CP HGP + + PV RA ++P + + +
Sbjct: 79 PRPFDPHDLW-CEECNNAHASVCPKHGPLHPIPNRPVLT----RARASLPLVLYIDRFLG 133
Query: 159 GESDVRCVNEVIPKGHIFGPYEGQI--STQDKSAGFFSWLIVDKNNRYKS-------IDG 209
G R IPK FGP EG + ++ K + +DK +R + +
Sbjct: 134 GVFSKRR----IPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFEL 189
Query: 210 SDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM----K 265
SDET NWM +V ++ EQNL+A+Q+ +Y+ +++ P + L+VWY+ Y +
Sbjct: 190 SDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQ 249
Query: 266 RLHSMSQETIHRNLARGEKR-----------LQREKSEQVLDNPEDLRGPIHLSVLRQGK 314
++H +S+E R + R +++ + E+ +Q L N D + + +G+
Sbjct: 250 KIHDISEE--ERKVLREQEKNWPCYECNRRFISSEQLQQHL-NSHDEKLDVFSRTRGRGR 306
Query: 315 SPYKRGFDEG 324
KR F G
Sbjct: 307 GRGKRRFGPG 316
>gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens]
Length = 1160
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 36/250 (14%)
Query: 99 PKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTS 158
P+ F D W CE C CP HGP + + PV RA ++P + + +
Sbjct: 165 PRPFDPHDLW-CEECNNAHASVCPKHGPLHPIPNRPVLT----RARASLPLVLYIDRFLG 219
Query: 159 GESDVRCVNEVIPKGHIFGPYEGQI--STQDKSAGFFSWLIVDKNNRYKS-------IDG 209
G R IPK FGP EG + ++ K + +DK +R + +
Sbjct: 220 GVFSKRR----IPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFEL 275
Query: 210 SDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM----K 265
SDET NWM +V ++ EQNL+A+Q+ +Y+ +++ P + L+VWY+ Y +
Sbjct: 276 SDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQ 335
Query: 266 RLHSMSQETIHRNLARGEKR-----------LQREKSEQVLDNPEDLRGPIHLSVLRQGK 314
++H +S+E R + R +++ + E+ +Q L N D + + +G+
Sbjct: 336 KIHDISEE--ERKVLREQEKNWPCYECNRRFISSEQLQQHL-NSHDEKLDVFSRTRGRGR 392
Query: 315 SPYKRGFDEG 324
KR F G
Sbjct: 393 GRGKRRFGPG 402
>gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens]
Length = 1061
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 36/250 (14%)
Query: 99 PKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTS 158
P+ F D W CE C CP HGP + + PV RA ++P + + +
Sbjct: 79 PRPFDPHDLW-CEECNNAHASVCPKHGPLHPIPNRPVLT----RARASLPLVLYIDRFLG 133
Query: 159 GESDVRCVNEVIPKGHIFGPYEGQI--STQDKSAGFFSWLIVDKNNRYKS-------IDG 209
G R IPK FGP EG + ++ K + +DK +R + +
Sbjct: 134 GVFSKRR----IPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWFEL 189
Query: 210 SDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM----K 265
SDET NWM +V ++ EQNL+A+Q+ +Y+ +++ P + L+VWY+ Y +
Sbjct: 190 SDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQ 249
Query: 266 RLHSMSQETIHRNLARGEKR-----------LQREKSEQVLDNPEDLRGPIHLSVLRQGK 314
++H +S+E R + R +++ + E+ +Q L N D + + +G+
Sbjct: 250 KIHDISEE--ERKVLREQEKNWPCYECNRRFISSEQLQQHL-NSHDEKLDVFSRTRGRGR 306
Query: 315 SPYKRGFDEG 324
KR F G
Sbjct: 307 GRGKRRFGPG 316
>gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]
Length = 1507
Score = 82.0 bits (201), Expect = 1e-15
Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 63/227 (27%)
Query: 103 QQVDFWFCESCQEYFVDECPNHGPPVFVSDT----------------------------- 133
+++ F +CE C +Y ECP GP V V D+
Sbjct: 307 EEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSWPASGHVHTQAGQGMRGYEDR 366
Query: 134 ----------PVPVGI---------PDRAALT--------------IPQGMEVVKDTSGE 160
VP G+ P R+ LT +P +E+ + G
Sbjct: 367 DRADPQQLPEAVPAGLVRRLSGQQLPCRSTLTWGRLCHLVAQGRSSLPPNLEIRRLEDGA 426
Query: 161 SDVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRY 220
V + +++ + FGP+E + + + F + K+ D S+E NWM
Sbjct: 427 EGVFAITQLVKRTQ-FGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMML 485
Query: 221 VVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
V + E QNL A+QH +YF RDI PG LRVWY+ Y K++
Sbjct: 486 VRPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAAFYAKKM 532
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 74.7 bits (182), Expect = 2e-13
Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 22/173 (12%)
Query: 110 CESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGM---------EVVKDTS-- 158
C+ C + ECP HGP + VG AA P + EV TS
Sbjct: 199 CDMCADNRNGECPMHGP---LHSLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTV 255
Query: 159 -GESDVRCVNEVIPKGHIFGPYEGQISTQDK-SAGFFS-----WLIVDKNNRYKS-IDGS 210
G + C + I +G GP++G + +K AG W I D++ + IDG
Sbjct: 256 PGLAYGICAAQRIQQGTWIGPFQGVLLPPEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGG 315
Query: 211 DETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY 263
+ +K++WMRY+ +R EQNL Q+ I++RAC DI G L VWY++ Y
Sbjct: 316 EPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSY 368
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 70.1 bits (170), Expect = 5e-12
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 141 DRAALTIPQGMEVVKDTSGESD---VRCVNEVIPKGHIFGPYEGQI--STQDKSAGFFS- 194
D+ +L +P+G+ +++ GE V C + I KG FGP++G++ +++ K+ G S
Sbjct: 243 DKDSLQLPEGLCLMQTVFGEVPHFGVFC-SSFIAKGVRFGPFQGKVVNASEVKTYGDNSV 301
Query: 195 -WLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGE 253
W I + + IDG T NWM YV +R +EQNL+A Q I++ +C++I +
Sbjct: 302 MWEIFEDGHLSHFIDGKGGT-GNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQ 360
Query: 254 WLRVWYSEDYMKRL 267
L VWY + Y K L
Sbjct: 361 ELLVWYGDCYEKFL 374
>gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [Homo
sapiens]
Length = 691
Score = 65.9 bits (159), Expect = 9e-11
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 197 IVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLR 256
I + + IDG +E K+NWMRYV + REQNL A Q+ IYF + I + L
Sbjct: 4 IYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELL 63
Query: 257 VWYSEDYMKRLH-SMSQETIHRNLARGEKRLQREKSEQVLDNPEDL--RGPIHLSVLRQG 313
VWY D+ +RLH E NL + + L++ +E+ P+++ R +L+
Sbjct: 64 VWYCRDFAERLHYPYPGELTMMNLTQTQSSLKQPSTEKNELCPKNVPKREYSVKEILKLD 123
Query: 314 KSPYK-RGFDEGDVHPQAKKKKID 336
+P K + ++ P +K +D
Sbjct: 124 SNPSKGKDLYRSNISPLTSEKDLD 147
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 63.5 bits (153), Expect = 4e-10
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Query: 130 VSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRC-VNEVIPKGHIFGPYEGQISTQDK 188
V+ T +P+ +P+ + + ++ + + I KG FGP+ G + +
Sbjct: 9 VAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQ 68
Query: 189 -SAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACR 247
+ W + N + ID +D K NW+RYV + EQNL + + IY++ +
Sbjct: 69 VKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLK 128
Query: 248 DIRPGEWLRVWYS-EDYMKRLHSMSQETIHRNLARGEKRLQREKSE 292
I PGE L VWY+ ED + ++ +E R + ++ K +
Sbjct: 129 PIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKGKKK 174
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 63.5 bits (153), Expect = 4e-10
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 3/166 (1%)
Query: 130 VSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRC-VNEVIPKGHIFGPYEGQISTQDK 188
V+ T +P+ +P+ + + ++ + + I KG FGP+ G + +
Sbjct: 9 VAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQ 68
Query: 189 -SAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACR 247
+ W + N + ID +D K NW+RYV + EQNL + + IY++ +
Sbjct: 69 VKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLK 128
Query: 248 DIRPGEWLRVWYS-EDYMKRLHSMSQETIHRNLARGEKRLQREKSE 292
I PGE L VWY+ ED + ++ +E R + ++ K +
Sbjct: 129 PIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKGKKK 174
>gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
Length = 226
Score = 62.4 bits (150), Expect = 1e-09
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 130 VSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRC-VNEVIPKGHIFGPYEGQISTQDK 188
V+ T +P+ +P+ + + ++ + + I KG FGP+ G + +
Sbjct: 9 VAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQ 68
Query: 189 -SAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACR 247
+ W + N + ID +D K NW+RYV + EQNL + + IY++ +
Sbjct: 69 VKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLK 128
Query: 248 DIRPGEWLRVWYS 260
I PGE L VWY+
Sbjct: 129 PIAPGEELLVWYN 141
>gi|15042949 PR domain containing 12 [Homo sapiens]
Length = 367
Score = 49.3 bits (116), Expect = 8e-06
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 170 IPKGHIFGPYEGQISTQDK----SAGFFSWLIVDKNNRYKS-IDGSDETKANWMRYVVIS 224
I G GP+ G++ + W + +++ + ID S E +WM Y+ +
Sbjct: 108 IKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFNEDGTVRYFIDASQEDHRSWMTYIKCA 167
Query: 225 REEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY 263
R E+EQNL Q I+++A I P + L VWY +
Sbjct: 168 RNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH 206
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 44.7 bits (104), Expect = 2e-04
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 170 IPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKAN-------WMRYVV 222
IP+ IFGP ++ S F + DK I D + AN W+R V
Sbjct: 35 IPENAIFGPCVLSHTSLYDSIAFIALKSTDKRT-VPYIFRVDTSAANGSSEGLMWLRLVQ 93
Query: 223 ISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
+R++ EQNL A+ + ++++R+ R I E L VWY ++ + L
Sbjct: 94 SARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKELTELL 138
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 44.7 bits (104), Expect = 2e-04
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 170 IPKGHIFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKAN-------WMRYVV 222
IP+ IFGP ++ S F + DK I D + AN W+R V
Sbjct: 35 IPENAIFGPCVLSHTSLYDSIAFIALKSTDKRT-VPYIFRVDTSAANGSSEGLMWLRLVQ 93
Query: 223 ISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRL 267
+R++ EQNL A+ + ++++R+ R I E L VWY ++ + L
Sbjct: 94 SARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKELTELL 138
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 122 PNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVV---KDTSGESDVRCVNEVIPKGHIFGP 178
P P D P+P R + G+ V K +GE CV V+P+
Sbjct: 67 PYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV--VVPRAAAKET 124
Query: 179 YEG--QISTQ---DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLL 233
G QI T G + + D + +D + +W++Y+ ++ +QNL
Sbjct: 125 DFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACSCDDQNLT 184
Query: 234 AFQHSERIYFRACRDIRPGEWLRVWYSE 261
Q SE+IY++ +DI PGE L V E
Sbjct: 185 MCQISEQIYYKVIKDIEPGEELLVHVKE 212
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 122 PNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVV---KDTSGESDVRCVNEVIPKGHIFGP 178
P P D P+P R + G+ V K +GE CV V+P+
Sbjct: 67 PYEAPVYIPEDIPIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV--VVPRAAAKET 124
Query: 179 YEG--QISTQ---DKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLL 233
G QI T G + + D + +D + +W++Y+ ++ +QNL
Sbjct: 125 DFGWEQILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACSCDDQNLT 184
Query: 234 AFQHSERIYFRACRDIRPGEWLRVWYSE 261
Q SE+IY++ +DI PGE L V E
Sbjct: 185 MCQISEQIYYKVIKDIEPGEELLVHVKE 212
>gi|41349476 PR domain containing 5 [Homo sapiens]
Length = 630
Score = 43.9 bits (102), Expect = 3e-04
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 139 IPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIV 198
+PDR +L + V+D G R V KG FGP+ G+ + + ++
Sbjct: 6 VPDRFSLKSSR----VQDGMGLYTARRVR----KGEKFGPFAGEKRMPEDLDENMDYRLM 57
Query: 199 -----DKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGE 253
K +D ++ +NW+R+V + + ++NL A Q E I++ A DI
Sbjct: 58 WEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEGENIFYLAVEDIETDT 117
Query: 254 WLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKS 291
L + Y + M+ ++ I + GE R +S
Sbjct: 118 ELLIGYLDSDMEA--EEEEQQIMTVIKEGEVENSRRQS 153
>gi|157364947 ecotropic viral integration site 1 isoform a [Homo
sapiens]
Length = 1115
Score = 43.5 bits (101), Expect = 5e-04
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 207 IDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY-SEDYMK 265
ID S +W++Y+ + + NL+A Q +++I++R DI PGE L ++ SEDY
Sbjct: 13 IDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQIFYRVVADIAPGEELLLFMKSEDYP- 71
Query: 266 RLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDL 301
H IH E++ + E +Q+ ++ +L
Sbjct: 72 --HETMAPDIHE-----ERQYRCEDCDQLFESKAEL 100
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 42.7 bits (99), Expect = 8e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 207 IDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSE 261
+D + +W++Y+ ++ +QNL Q SE+IY++ +DI PGE L V E
Sbjct: 59 VDANQAGAGSWLKYIRVACSCDDQNLTMCQISEQIYYKVIKDIEPGEELLVHVKE 113
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 42.7 bits (99), Expect = 8e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 203 RYKSIDGSDETKANWMRYVVISREEREQNLLAFQH--SERIYFRACRDIRPGEWLRVWYS 260
R + +D S + W+ + +R +EQ L A +I++RA RD++PGE L VWYS
Sbjct: 53 RGELVDESGGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYS 112
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 37.0 bits (84), Expect = 0.043
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 143 AALTIPQGMEVVKDTSGES--DVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDK 200
A ++P+G+ + + E V CV + + G ++GP E + ++++K G + +
Sbjct: 53 ALKSLPRGLALGPSLAKEQRLGVWCVGDPLQPGLLWGPLEEESASKEKGEG-----VKPR 107
Query: 201 NNRYKSIDG-----SDETKANWMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWL 255
S+ + E + W V R E E N+ + SER++ + + + PG L
Sbjct: 108 QEENLSLGPWGDVCACEQSSGWTSLVQRGRLESEGNVAPVRISERLHLQVYQLVLPGSEL 167
Query: 256 RVW 258
+W
Sbjct: 168 LLW 170
>gi|19743907 RAR-related orphan receptor B [Homo sapiens]
Length = 459
Score = 36.2 bits (82), Expect = 0.073
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 321 FDEGDVHPQAKKKKIDLIFKDVLEASLESAKV---EAHQLALSTSLVIRKVPKYQDDA-- 375
F+ G + P +ID I ++++++ LE+ + E HQLA T ++ YQ +
Sbjct: 198 FNNGQLAPGITMTEIDRIAQNIIKSHLETCQYTMEELHQLAWQTH-TYEEIKAYQSKSRE 256
Query: 376 --YSQCATTMTHGVQNI 390
+ QCA +TH +Q +
Sbjct: 257 ALWQQCAIQITHAIQYV 273
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 33.1 bits (74), Expect = 0.62
Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 4/135 (2%)
Query: 306 HLSVLRQGKSPYKRGFDEGDVHPQAKKKKIDLIFKDVLEASLESAKVEAHQLALSTSLVI 365
H SVL +K+ F G + Q +ID + + L A LE A + I
Sbjct: 48 HRSVLAACSKYFKKLFTAGTLASQPYVYEIDFVQPEALAAILEFAYTSTLTITAGNVKHI 107
Query: 366 RKVPKYQDDAYSQCATTMTHGVQNIGQTQGEGDWKVPQGVSKEPGQLEDEEEEPSSFKAD 425
+ + QC + + G GE D K ++ EDEEEE + D
Sbjct: 108 LNAARMLE---IQCIVNVCLEIMEPGGDGGEEDDKEDDDDDEDDDDEEDEEEEEEEEEDD 164
Query: 426 SPAEASLASDPHELP 440
A D LP
Sbjct: 165 DDDTEDFA-DQENLP 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,761,584
Number of Sequences: 37866
Number of extensions: 1072703
Number of successful extensions: 4189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4105
Number of HSP's gapped (non-prelim): 104
length of query: 511
length of database: 18,247,518
effective HSP length: 107
effective length of query: 404
effective length of database: 14,195,856
effective search space: 5735125824
effective search space used: 5735125824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.