IFT140 27666

Name: IFT140	Sequence: fasta or formatted (1462aa)		NCBI GI: 41281447
Description: intraflagellar transport 140		Referenced in: Additional Structural Proteins WD Repeat Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.2 134 2 C cysteine 2.1 31 2 D aspartate 5.5 81 3 E glutamate 8.4 123 2 F phenylalanine 4.0 58 2 G glycine 5.6 82 2 H histidine 3.3 48 2 I isoleucine 3.4 49 2 K lysine 5.1 74 2 L leucine 10.5 153 3 M methionine 2.9 42 1 N asparagine 2.7 39 1 P proline 3.7 54 3 Q glutamine 4.7 69 2 R arginine 6.2 90 3 S serine 6.8 99 3 T threonine 4.7 68 2 V valine 6.8 99 3 W tryptophan 1.3 19 2 Y tyrosine 3.4 50 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intraflagellar transport 140 WDR19 0.011 WD repeat domain 19 CDC20B 0.009 CDC20 cell division cycle 20 homolog B isoform 1 [Ho... IFT172 0.008 selective LIM binding factor homolog CDC20B 0.007 CDC20 cell division cycle 20 homolog B isoform 2 [H... EML1 0.006 echinoderm microtubule associated protein like 1 iso... EML1 0.006 echinoderm microtubule associated protein like 1 iso... WDR3 0.005 WD repeat-containing protein 3 CDC20 0.005 cell division cycle 20 EML2 0.005 echinoderm microtubule associated protein like 2 [Hom... STRN3 0.005 nuclear autoantigen isoform 1 STRN3 0.005 nuclear autoantigen isoform 2 CIAO1 0.005 WD repeat domain 39 WDR35 0.005 WD repeat domain 35 isoform 2 WDR35 0.005 WD repeat domain 35 isoform 1 AAAS 0.004 achalasia, adrenocortical insufficiency, alacrimia (... ARPC1A 0.004 actin related protein 2/3 complex subunit 1A STRAP 0.004 serine/threonine kinase receptor associated protein... TTC28 0.004 tetratricopeptide repeat domain 28 STRN4 0.004 zinedin isoform 2 STRN4 0.004 zinedin isoform 1 EML3 0.004 echinoderm microtubule associated protein like 3 [H... TBL3 0.004 transducin beta-like 3 TEP1 0.003 telomerase-associated protein 1 UTP20 0.003 down-regulated in metastasis LOC653877 0.003 PREDICTED: similar to Temporarily Assigned Gene name... TBL1XR1 0.003 transducin (beta)-like 1 X-linked receptor 1 TBL1Y 0.003 transducin beta-like 1Y TBL1Y 0.003 transducin beta-like 1Y TBL1Y 0.003 transducin beta-like 1Y Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.