Guide to the Human Genome
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Name: WDR35 Sequence: fasta or formatted (1170aa) NCBI GI: 56243599
Description:

WD repeat domain 35 isoform 2

Referenced in:

Additional Genes in Development
WD Repeat Proteins

Other entries for this name:
alt prot [1181aa] WD repeat domain 35 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         86           2
 C cysteine            2.6         31           1
 D aspartate           5.8         68           2
 E glutamate           6.7         78           3
 F phenylalanine       3.6         42           2
 G glycine             6.4         75           3
 H histidine           2.1         24           1
 I isoleucine          6.2         72           2
 K lysine              7.3         85           2
 L leucine            10.3        121           2
 M methionine          2.4         28           2
 N asparagine          4.5         53           2
 P proline             3.0         35           2
 Q glutamine           4.4         51           2
 R arginine            4.3         50           2
 S serine              6.2         72           2
 T threonine           4.5         53           2
 V valine              6.4         75           2
 W tryptophan          1.8         21           1
 Y tyrosine            4.3         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 35 isoform 2 
WDR35                 0.996   WD repeat domain 35 isoform 1 
TULP4                 0.051   tubby like protein 4 isoform 2 
TULP4                 0.051   tubby like protein 4 isoform 1 
IFT122                0.017   WD repeat domain 10 isoform 4 
IFT122                0.017   WD repeat domain 10 isoform 1 
IFT122                0.017   WD repeat domain 10 isoform 3 
IFT122                0.017   WD repeat domain 10 isoform 2 
IFT80                 0.009   WD repeat domain 56 
HIRA                  0.009   HIR histone cell cycle regulation defective homolog ...
IFT172                0.009   selective LIM binding factor homolog 
CHAF1B                0.008   chromatin assembly factor 1 subunit B 
THOC3                 0.008   THO complex 3 
WDR26                 0.007   WD repeat domain 26 isoform b 
WDR26                 0.007   WD repeat domain 26 isoform a 
CORO1A                0.007   coronin, actin binding protein, 1A 
BTRC                  0.006   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.006   beta-transducin repeat containing protein isoform 1 ...
CORO1C                0.006   coronin, actin binding protein, 1C isoform 1 
SMU1                  0.006   smu-1 suppressor of mec-8 and unc-52 homolog 
SEC31B                0.006   SEC31 homolog B 
WDR5B                 0.006   WD repeat domain 5B 
IFT140                0.006   intraflagellar transport 140 
WDR5                  0.006   WD repeat domain 5 
WDR5                  0.006   WD repeat domain 5 
CORO6                 0.006   coronin 6 
WDR61                 0.006   WD repeat domain 61 
WDFY2                 0.006   WD repeat and FYVE domain containing 2 
WDR53                 0.006   WD repeat domain 53 
CORO1B                0.006   coronin, actin binding protein, 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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