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Search of human proteins with 40548326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40548326 stella [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40548326 stella [Homo sapiens] 321 1e-88
gi|169204894 PREDICTED: similar to stella [Homo sapiens] 233 5e-62
gi|169205467 PREDICTED: similar to stella [Homo sapiens] 233 5e-62
gi|169203820 PREDICTED: similar to developmental pluripotency-as... 233 5e-62
gi|153791171 family with sequence similarity 156, member B [Homo... 42 2e-04
gi|31543441 family with sequence similarity 156, member A [Homo ... 42 2e-04
gi|19923790 rab3 GTPase-activating protein, non-catalytic subuni... 30 0.87
gi|193083160 zinc finger protein 441 [Homo sapiens] 30 1.1
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 29 1.9
gi|5031875 lamin A/C isoform 2 [Homo sapiens] 29 1.9
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens] 29 1.9
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 29 1.9
gi|134288865 solute carrier family 4, sodium bicarbonate cotrans... 28 2.5
gi|31542772 zinc finger protein 491 [Homo sapiens] 28 2.5
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso... 28 3.3
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso... 28 3.3
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 28 3.3
gi|157266326 oculocutaneous albinism II [Homo sapiens] 27 5.6
gi|4759188 syntaxin 8 [Homo sapiens] 27 5.6
gi|116805342 human immunodeficiency virus type I enhancer bindin... 27 5.6
gi|7662180 glycine-, glutamate-, thienylcyclohexylpiperidine-bin... 27 5.6
gi|224548994 zinc finger protein 709 isoform b [Homo sapiens] 27 7.4
gi|239753965 PREDICTED: zinc finger, DHHC-type containing 11B [H... 27 7.4
gi|239742476 PREDICTED: zinc finger, DHHC-type containing 11B is... 27 7.4
gi|22749235 zinc finger protein 709 isoform a [Homo sapiens] 27 7.4
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 27 7.4
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 27 7.4
gi|81295809 pericentrin [Homo sapiens] 27 9.6
gi|145279204 exonuclease 3'-5' domain containing 3 [Homo sapiens] 27 9.6
gi|122937217 zinc finger protein 433 [Homo sapiens] 27 9.6
>gi|40548326 stella [Homo sapiens]
Length = 159
Score = 321 bits (823), Expect = 1e-88
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MDPSQFNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEAL 60
MDPSQFNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEAL
Sbjct: 1 MDPSQFNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEAL 60
Query: 61 LRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEPK 120
LRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEPK
Sbjct: 61 LRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEPK 120
Query: 121 GVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP 159
GVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP
Sbjct: 121 GVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP 159
>gi|169204894 PREDICTED: similar to stella [Homo sapiens]
Length = 160
Score = 233 bits (594), Expect = 5e-62
Identities = 120/160 (75%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Query: 1 MDPSQ-FNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEA 59
MDPSQ FNPT IP S QMLT+ENS+DDSGASQI SETL KNL+NLT+NAS+ES SPL E
Sbjct: 1 MDPSQKFNPTSIPESSQMLTKENSQDDSGASQICSETLTKNLNNLTVNASNESPSPLPEC 60
Query: 60 LLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEP 119
L +S A +LREI D LY RRGVRTLLSVQRE+MAR RYMLLGGV HER TN
Sbjct: 61 SLHEQSTRATILREITDHLLYRRRGVRTLLSVQRERMARFRYMLLGGVHPHERILTNTGL 120
Query: 120 KGVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP 159
KGVKKESRPF+CPCSFC+ N WDPSENARIGN DTKPLQP
Sbjct: 121 KGVKKESRPFRCPCSFCLFNRWDPSENARIGNFDTKPLQP 160
>gi|169205467 PREDICTED: similar to stella [Homo sapiens]
Length = 160
Score = 233 bits (594), Expect = 5e-62
Identities = 120/160 (75%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Query: 1 MDPSQ-FNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEA 59
MDPSQ FNPT IP S QMLT+ENS+DDSGASQI SETL KNL+NLT+NAS+ES SPL E
Sbjct: 1 MDPSQKFNPTSIPESSQMLTKENSQDDSGASQICSETLTKNLNNLTVNASNESPSPLPEC 60
Query: 60 LLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEP 119
L +S A +LREI D LY RRGVRTLLSVQRE+MAR RYMLLGGV HER TN
Sbjct: 61 SLHEQSTRATILREITDHLLYRRRGVRTLLSVQRERMARFRYMLLGGVHPHERILTNTGL 120
Query: 120 KGVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP 159
KGVKKESRPF+CPCSFC+ N WDPSENARIGN DTKPLQP
Sbjct: 121 KGVKKESRPFRCPCSFCLFNRWDPSENARIGNFDTKPLQP 160
>gi|169203820 PREDICTED: similar to developmental
pluripotency-associated 3 [Homo sapiens]
Length = 160
Score = 233 bits (594), Expect = 5e-62
Identities = 120/160 (75%), Positives = 130/160 (81%), Gaps = 1/160 (0%)
Query: 1 MDPSQ-FNPTYIPGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEA 59
MDPSQ FNPT IP S QMLT+ENS+DDSGASQI SETL KNL+NLT+NAS+ES SPL E
Sbjct: 1 MDPSQKFNPTSIPESSQMLTKENSQDDSGASQICSETLTKNLNNLTVNASNESPSPLPEC 60
Query: 60 LLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEP 119
L +S A +LREI D LY RRGVRTLLSVQRE+MAR RYMLLGGV HER TN
Sbjct: 61 SLHEQSTRATILREITDHLLYRRRGVRTLLSVQRERMARFRYMLLGGVHPHERILTNTGL 120
Query: 120 KGVKKESRPFKCPCSFCVSNGWDPSENARIGNQDTKPLQP 159
KGVKKESRPF+CPCSFC+ N WDPSENARIGN DTKPLQP
Sbjct: 121 KGVKKESRPFRCPCSFCLFNRWDPSENARIGNFDTKPLQP 160
>gi|153791171 family with sequence similarity 156, member B [Homo
sapiens]
Length = 213
Score = 42.0 bits (97), Expect = 2e-04
Identities = 48/150 (32%), Positives = 63/150 (42%), Gaps = 27/150 (18%)
Query: 1 MDPSQF-NPTYIPGSPQMLTEENSRDDSGASQIS-SETLIKNLSNLTINASSESVSPLSE 58
MDP Q NP S M E S++ SQ S SE + LSNL+ PL E
Sbjct: 1 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE 60
Query: 59 ALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHER------ 112
LLR+ R E++ L RR R L + K A LR+ VR R
Sbjct: 61 GLLRQ--------RYREEKTLEERRWER--LEFLQRKKAFLRH-----VRRRHRDHMAPY 105
Query: 113 ---RPTNKEPKGVKKESRPFKCPCSFCVSN 139
R P G + ++R F+C C +C S+
Sbjct: 106 AVGREARISPLGDRSQNR-FRCECRYCQSH 134
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 33 SSETLIKNLSNLTINASSESVSPLSEALLRRESVGAAVLREIEDE 77
S ETL++ LS LT++ + PL EA L+ + RE + E
Sbjct: 153 SWETLVQGLSGLTLSLGTNQPGPLPEAALQPQETEEKRQRERQQE 197
>gi|31543441 family with sequence similarity 156, member A [Homo
sapiens]
Length = 213
Score = 42.0 bits (97), Expect = 2e-04
Identities = 48/150 (32%), Positives = 63/150 (42%), Gaps = 27/150 (18%)
Query: 1 MDPSQF-NPTYIPGSPQMLTEENSRDDSGASQIS-SETLIKNLSNLTINASSESVSPLSE 58
MDP Q NP S M E S++ SQ S SE + LSNL+ PL E
Sbjct: 1 MDPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPMMGLSNLSPGPGPSQAVPLPE 60
Query: 59 ALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHER------ 112
LLR+ R E++ L RR R L + K A LR+ VR R
Sbjct: 61 GLLRQ--------RYREEKTLEERRWER--LEFLQRKKAFLRH-----VRRRHRDHMAPY 105
Query: 113 ---RPTNKEPKGVKKESRPFKCPCSFCVSN 139
R P G + ++R F+C C +C S+
Sbjct: 106 AVGREARISPLGDRSQNR-FRCECRYCQSH 134
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 33 SSETLIKNLSNLTINASSESVSPLSEALLRRESVGAAVLREIEDE 77
S ETL++ LS LT++ + PL EA L+ + RE + E
Sbjct: 153 SWETLVQGLSGLTLSLGTNQPGPLPEAALQPQETEEKRQRERQQE 197
>gi|19923790 rab3 GTPase-activating protein, non-catalytic subunit
[Homo sapiens]
Length = 1393
Score = 30.0 bits (66), Expect = 0.87
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 27 SGASQISSETLIKNLSNLTINASSESVSPLSEALLRRESVGAAVLREIED-----EWLYS 81
S A+QIS+ K S + A SE+++ EAL +L+++ED L+S
Sbjct: 846 SVAAQISNNMTEKKFSQTVLGADSEALTDSWEALSLDTEYWKLLLKQLEDCLILQTLLHS 905
Query: 82 RRGVRT--LLSVQREKMARL--RYMLLGG 106
+ +T + S+Q E + RL + +L GG
Sbjct: 906 KGNTQTSKVSSLQAEPLPRLSVKKLLEGG 934
>gi|193083160 zinc finger protein 441 [Homo sapiens]
Length = 693
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VRTHERRPTNKEPKGVKKESRPFKCPCSF 135
+R HER T ++P K+ +PF CP +F
Sbjct: 630 LRIHERVHTGEKPYKCKECGKPFHCPSAF 658
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 42 SNLTINASSESVSPLSEALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLR 100
S + I++ S +S L + L +E A LR++ED R R LL+ + +MA +R
Sbjct: 295 SRIRIDSLSAQLSQLQKQLAAKE----AKLRDLEDSLARERDTSRRLLAEKEREMAEMR 349
>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
Length = 572
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 42 SNLTINASSESVSPLSEALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLR 100
S + I++ S +S L + L +E A LR++ED R R LL+ + +MA +R
Sbjct: 295 SRIRIDSLSAQLSQLQKQLAAKE----AKLRDLEDSLARERDTSRRLLAEKEREMAEMR 349
>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
Length = 664
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 42 SNLTINASSESVSPLSEALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLR 100
S + I++ S +S L + L +E A LR++ED R R LL+ + +MA +R
Sbjct: 295 SRIRIDSLSAQLSQLQKQLAAKE----AKLRDLEDSLARERDTSRRLLAEKEREMAEMR 349
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 28.9 bits (63), Expect = 1.9
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 22 NSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEALLRRESVGAAVLREIEDEWLYS 81
+SRDD S+I+SET +N +N I S+ LS A+ G ++ + +E YS
Sbjct: 1708 SSRDDPSTSEITSETQDRNANNHGIQLSNS----LSSAITAEN--GNSISNGLPEEDGYS 1761
Query: 82 RRGV 85
R +
Sbjct: 1762 RLSI 1765
>gi|134288865 solute carrier family 4, sodium bicarbonate
cotransporter, member 7 [Homo sapiens]
Length = 1214
Score = 28.5 bits (62), Expect = 2.5
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 55 PLSEALLRRESVGAAVLREIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRP 114
P EA++ + V + E E L S R V + V K +R R+ G H RR
Sbjct: 13 PDEEAVVDLGKTSSTVNTKFEKEELESHRAVYIGVHVPFSKESRRRHRHRGHKHHHRRRK 72
Query: 115 TNKEPKGVKKESRPFKCP 132
+ K +ES + P
Sbjct: 73 DKESDKEDGRESPSYDTP 90
>gi|31542772 zinc finger protein 491 [Homo sapiens]
Length = 437
Score = 28.5 bits (62), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 108 RTHERRPTNKEPKGVKKESRPFKCPCSF 135
R HER T ++P K+ + F CP SF
Sbjct: 203 RRHERTHTGEKPYKCKECGKAFNCPSSF 230
>gi|225543215 antigen identified by monoclonal antibody Ki-67 isoform
2 [Homo sapiens]
Length = 2896
Score = 28.1 bits (61), Expect = 3.3
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 73 EIEDEWLYSRRGVRTL---LSVQREKMARLRYMLLGGVRTHERRPTNKEPKGVKKESRPF 129
E+ED S+R RT + V+ E +A + G TH T+KEP G K ++ F
Sbjct: 2470 ELEDTATSSKRRPRTRAQKVEVKEELLAVGKLTQTSGETTH----TDKEPVGEGKGTKAF 2525
Query: 130 KCP 132
K P
Sbjct: 2526 KQP 2528
>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
1 [Homo sapiens]
Length = 3256
Score = 28.1 bits (61), Expect = 3.3
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 73 EIEDEWLYSRRGVRTL---LSVQREKMARLRYMLLGGVRTHERRPTNKEPKGVKKESRPF 129
E+ED S+R RT + V+ E +A + G TH T+KEP G K ++ F
Sbjct: 2830 ELEDTATSSKRRPRTRAQKVEVKEELLAVGKLTQTSGETTH----TDKEPVGEGKGTKAF 2885
Query: 130 KCP 132
K P
Sbjct: 2886 KQP 2888
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 3.3
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 12 PGSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEALLRRESVGAAVL 71
PGSPQ ++ G+S++SS + ++ S + + S S S S R +S +
Sbjct: 10 PGSPQEKDSPSTSRSGGSSRLSSRSRSRSFSRSSRSHSRVS-SRFSSRSRRSKSRSRSRR 68
Query: 72 REIEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPT 115
R YSR R S R + R R G R + R P+
Sbjct: 69 RHQRKYRRYSRSYSR---SRSRSRSRRYRERRYGFTRRYYRSPS 109
>gi|157266326 oculocutaneous albinism II [Homo sapiens]
Length = 838
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 15 PQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEALLR 62
P+ +T E S +DS A L + +S L+ +ASSE L +R
Sbjct: 118 PEFITAEESWEDSSADWERRYLLSREVSGLSASASSEKGDLLDSPHIR 165
>gi|4759188 syntaxin 8 [Homo sapiens]
Length = 236
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 66 VGAAVLREIEDEWLYSRRG---------VRTLLSVQREKMARLRYMLLGGVRTHE 111
+ + +I+ Y R+G +R LL +EK+A L+ +LL V TH+
Sbjct: 16 IAQEIAEKIQQRNQYERKGEKAPKLTVTIRALLQNLKEKIALLKDLLLRAVSTHQ 70
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 27.3 bits (59), Expect = 5.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 3 PSQFNPTYIPG-------SPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSP 55
P+ F T +P PQ+ + S + A+ + S+T +K+L T N+SS +V P
Sbjct: 1448 PTSFQNTALPSVNAVPYQGPQLTS--TSLAEFSANTLHSQTQVKDLQAETSNSSSTNVFP 1505
Query: 56 LSE 58
+ +
Sbjct: 1506 VQQ 1508
>gi|7662180 glycine-, glutamate-,
thienylcyclohexylpiperidine-binding protein [Homo
sapiens]
Length = 925
Score = 27.3 bits (59), Expect = 5.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 13 GSPQMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSEALL 61
G P+ LTE+ R+ S A + ETL+ T + +++ LS+ L+
Sbjct: 415 GEPEPLTEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLM 463
>gi|224548994 zinc finger protein 709 isoform b [Homo sapiens]
Length = 609
Score = 26.9 bits (58), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 107 VRTHERRPTNKEPKGVKKESRPFKCPCSF 135
VR HER T ++P K+ + F C SF
Sbjct: 403 VRIHERTHTGEKPYECKQCGKAFSCSSSF 431
>gi|239753965 PREDICTED: zinc finger, DHHC-type containing 11B [Homo
sapiens]
Length = 573
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 120 KGVKKESRP--FKCPCSFCVSNGWDPSENAR 148
+GVK +S +KCPC FC S D A+
Sbjct: 524 QGVKAKSSLLIYKCPCHFCTSVNQDGDSKAQ 554
>gi|239742476 PREDICTED: zinc finger, DHHC-type containing 11B
isoform 1 [Homo sapiens]
Length = 360
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 120 KGVKKESRP--FKCPCSFCVSNGWDPSENAR 148
+GVK +S +KCPC FC S D A+
Sbjct: 311 QGVKAKSSLLIYKCPCHFCTSVNQDGDSKAQ 341
>gi|22749235 zinc finger protein 709 isoform a [Homo sapiens]
Length = 641
Score = 26.9 bits (58), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 107 VRTHERRPTNKEPKGVKKESRPFKCPCSF 135
VR HER T ++P K+ + F C SF
Sbjct: 435 VRIHERTHTGEKPYECKQCGKAFSCSSSF 463
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 26.9 bits (58), Expect = 7.4
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 7 NPTYIPGSPQMLTEENSRDDSGA----SQISSETLIKNLSNLTIN---ASSESVSPLSEA 59
NPT+ P + ++E SG +++ ++T + S I+ +SSESV+P +E
Sbjct: 161 NPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEG 220
Query: 60 LLRRESVGAAVLREIEDE 77
L+++S G++V + + +
Sbjct: 221 RLQQKS-GSSVQKGVNSQ 237
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 26.9 bits (58), Expect = 7.4
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 7 NPTYIPGSPQMLTEENSRDDSGA----SQISSETLIKNLSNLTIN---ASSESVSPLSEA 59
NPT+ P + ++E SG +++ ++T + S I+ +SSESV+P +E
Sbjct: 161 NPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEG 220
Query: 60 LLRRESVGAAVLREIEDE 77
L+++S G++V + + +
Sbjct: 221 RLQQKS-GSSVQKGVNSQ 237
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 26.6 bits (57), Expect = 9.6
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 16 QMLTEENSRDDSGASQISSETLIKNLSNLTINASSESVSPLSE--ALLRRESVGAAVLRE 73
Q L EE SR + + +++ + +++ + + + LRRE +A L+
Sbjct: 2792 QKLKEEKSR------VVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALRREKEVSATLKS 2845
Query: 74 IEDEWLYSRRGVRTLLSVQREKMARLRYMLLGGVRTHERRPTNKEPKGVKKESRPFKCPC 133
+ +R +R L +REK A L+ L + P KE +G K R +
Sbjct: 2846 TVEALHTQKRELRCSLEREREKPAWLQAEL------EQSHPRLKEQEGRKAARRSAEARQ 2899
Query: 134 SFCVSNGW 141
S + W
Sbjct: 2900 SPAAAEQW 2907
>gi|145279204 exonuclease 3'-5' domain containing 3 [Homo sapiens]
Length = 876
Score = 26.6 bits (57), Expect = 9.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 110 HERRPTNKEPKGVKKESRPF---KCPCSFCVSNGWDPSENAR 148
H RP ++P G++K S P + P + VS G P AR
Sbjct: 587 HRERPGARKPPGLQKASAPAAPRQVPVAVAVSEGAAPQIPAR 628
>gi|122937217 zinc finger protein 433 [Homo sapiens]
Length = 673
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 110 HERRPTNKEPKGVKKESRPFKCPCS 134
HER T ++P K+ + FKCP S
Sbjct: 300 HERTHTGEKPYECKECGKAFKCPSS 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,981,717
Number of Sequences: 37866
Number of extensions: 236240
Number of successful extensions: 705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 59
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.