Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100127919 Sequence: fasta or formatted (160aa) NCBI GI: 169204894
Description:

PREDICTED: similar to stella

Referenced in:

Stem Cells and Early Development

Other entries for this name:
alt mRNA [160aa] PREDICTED: similar to developmental pluripotency-associated 3
alt mRNA [160aa] PREDICTED: similar to stella
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          5           1
 C cysteine            3.1          5           1
 D aspartate           3.8          6           2
 E glutamate           6.9         11           1
 F phenylalanine       3.8          6           1
 G glycine             4.4          7           2
 H histidine           2.5          4           1
 I isoleucine          3.8          6           1
 K lysine              4.4          7           2
 L leucine            10.6         17           2
 M methionine          2.5          4           1
 N asparagine          6.9         11           2
 P proline             7.5         12           1
 Q glutamine           4.4          7           1
 R arginine            9.4         15           3
 S serine             10.6         17           2
 T threonine           7.5         12           1
 V valine              3.1          5           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to stella 
LOC100127919          1.000   PREDICTED: similar to stella 
LOC100127919          1.000   PREDICTED: similar to developmental pluripotency-as...
DPPA3                 0.682   stella 
FAM156B               0.066   family with sequence similarity 156, member B [Homo...
FAM156A               0.066   family with sequence similarity 156, member A 
PFAS                  0.023   phosphoribosylformylglycinamidine synthase 
LGI4                  0.016   leucine-rich repeat LGI family, member 4 
MICAL3                0.016   microtubule associated monoxygenase, calponin and L...
PWWP2A                0.016   PWWP domain containing 2A isoform b 
MYO16                 0.016   myosin heavy chain Myr 8 
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
COIL                  0.013   coilin 
CHADL                 0.007   chondroadherin-like 
MADD                  0.007   MAP-kinase activating death domain-containing prote...
MADD                  0.007   MAP-kinase activating death domain-containing protei...
MADD                  0.007   MAP-kinase activating death domain-containing prote...
MADD                  0.007   MAP-kinase activating death domain-containing prote...
MADD                  0.007   MAP-kinase activating death domain-containing prote...
MADD                  0.007   MAP-kinase activating death domain-containing prote...
MADD                  0.007   MAP-kinase activating death domain-containing prote...
HERC2                 0.007   hect domain and RLD 2 
WNK1                  0.007   WNK lysine deficient protein kinase 1 
ERBB2IP               0.007   ERBB2 interacting protein isoform 7 
ERBB2IP               0.007   ERBB2 interacting protein isoform 2 
MEFV                  0.007   Mediterranean fever protein 
GPR112                0.007   G-protein coupled receptor 112 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press