Guide to the Human Genome
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Name: DPPA3 Sequence: fasta or formatted (159aa) NCBI GI: 40548326
Description:

stella

Referenced in:

Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          7           2
 C cysteine            1.9          3           1
 D aspartate           3.8          6           2
 E glutamate           8.8         14           2
 F phenylalanine       1.9          3           1
 G glycine             5.7          9           2
 H histidine           0.6          1           1
 I isoleucine          3.8          6           1
 K lysine              5.0          8           2
 L leucine             9.4         15           2
 M methionine          2.5          4           1
 N asparagine          5.7          9           1
 P proline             7.5         12           1
 Q glutamine           3.8          6           1
 R arginine            9.4         15           2
 S serine             12.6         20           2
 T threonine           5.0          8           1
 V valine              5.0          8           1
 W tryptophan          1.3          2           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stella 
LOC100127919          0.703   PREDICTED: similar to stella 
LOC100127919          0.703   PREDICTED: similar to stella 
LOC100127919          0.703   PREDICTED: similar to developmental pluripotency-as...
FAM156B               0.057   family with sequence similarity 156, member B [Homo...
FAM156A               0.057   family with sequence similarity 156, member A 
RAB3GAP2              0.017   rab3 GTPase-activating protein, non-catalytic subuni...
ZNF441                0.017   zinc finger protein 441 
LMNA                  0.014   lamin A/C isoform 3 
LMNA                  0.014   lamin A/C isoform 2 
LMNA                  0.014   lamin A/C isoform 1 precursor 
MYO16                 0.014   myosin heavy chain Myr 8 
SLC4A7                0.010   solute carrier family 4, sodium bicarbonate cotrans...
ZNF491                0.010   zinc finger protein 491 
MKI67                 0.010   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.010   antigen identified by monoclonal antibody Ki-67 iso...
C1orf63               0.010   hypothetical protein LOC57035 
OCA2                  0.007   oculocutaneous albinism II 
STX8                  0.007   syntaxin 8 
HIVEP1                0.007   human immunodeficiency virus type I enhancer bindin...
KIAA0562              0.007   glycine-, glutamate-, thienylcyclohexylpiperidine-bin...
ZNF709                0.007   zinc finger protein 709 isoform b 
ZDHHC11B              0.007   PREDICTED: zinc finger, DHHC-type containing 11B [H...
ZDHHC11B              0.007   PREDICTED: zinc finger, DHHC-type containing 11B is...
ZNF709                0.007   zinc finger protein 709 isoform a 
SMARCAL1              0.007   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.007   SWI/SNF-related matrix-associated actin-dependent r...
PCNT                  0.007   pericentrin 
EXD3                  0.007   exonuclease 3'-5' domain containing 3 
ZNF433                0.007   zinc finger protein 433 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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