Guide to the Human Genome
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Name: SMARCAL1 Sequence: fasta or formatted (954aa) NCBI GI: 21071060
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a-like 1

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [954aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         83           3
 C cysteine            1.0         10           1
 D aspartate           4.6         44           2
 E glutamate           6.0         57           2
 F phenylalanine       4.4         42           2
 G glycine             4.9         47           2
 H histidine           2.0         19           2
 I isoleucine          4.5         43           2
 K lysine              7.3         70           2
 L leucine            10.3         98           3
 M methionine          1.9         18           1
 N asparagine          2.8         27           1
 P proline             6.2         59           2
 Q glutamine           6.0         57           3
 R arginine            5.1         49           2
 S serine             10.6        101           4
 T threonine           5.1         49           2
 V valine              5.2         50           3
 W tryptophan          1.3         12           1
 Y tyrosine            2.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent re... 
SMARCAL1              1.000   SWI/SNF-related matrix-associated actin-dependent r...
ZRANB3                0.175   zinc finger, RAN-binding domain containing 3 
BTAF1                 0.061   BTAF1 RNA polymerase II, B-TFIID transcription facto...
SMARCA5               0.057   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.056   SWI/SNF-related matrix-associated actin-dependent r...
CHD1L                 0.055   chromodomain helicase DNA binding protein 1-like [H...
SMARCA1               0.055   SWI/SNF-related matrix-associated actin-dependent re...
CHD2                  0.052   chromodomain helicase DNA binding protein 2 isoform...
CHD4                  0.052   chromodomain helicase DNA binding protein 4 
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.051   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.051   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.051   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAD1              0.050   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.049   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.049   SWI/SNF-related, matrix-associated actin-dependent ...
CHD7                  0.048   chromodomain helicase DNA binding protein 7 
CHD5                  0.048   chromodomain helicase DNA binding protein 5 
CHD6                  0.047   chromodomain helicase DNA binding protein 6 
CHD3                  0.047   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.047   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.047   chromodomain helicase DNA binding protein 3 isoform...
HELLS                 0.046   helicase, lymphoid-specific 
CHD1                  0.046   chromodomain helicase DNA binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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