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Search of human proteins with 40255210
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens] 443 e-125
gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens] 130 6e-31
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 37 0.015
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 37 0.015
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 37 0.015
gi|46410931 attractin-like 1 [Homo sapiens] 34 0.077
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 34 0.100
gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens] 33 0.13
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 32 0.50
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 32 0.50
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 31 0.85
gi|83716019 zinc finger protein 284 [Homo sapiens] 31 0.85
gi|109715866 FERM domain containing 6 [Homo sapiens] 30 1.4
gi|22748721 FERM domain containing 6 [Homo sapiens] 30 1.4
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 29 3.2
gi|148833508 notch1 preproprotein [Homo sapiens] 28 4.2
gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens] 28 4.2
gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens] 28 4.2
gi|28274686 zinc finger protein 82 homolog [Homo sapiens] 28 4.2
gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens] 28 5.5
gi|20336184 paired basic amino acid cleaving system 4 isoform h ... 28 5.5
gi|20336182 paired basic amino acid cleaving system 4 isoform g ... 28 5.5
gi|4505577 paired basic amino acid cleaving system 4 isoform a p... 28 5.5
gi|20336180 paired basic amino acid cleaving system 4 isoform b ... 28 5.5
gi|237512949 zinc finger protein 138 isoform 1 [Homo sapiens] 28 7.2
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 28 7.2
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 28 7.2
gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens] 28 7.2
gi|91823271 xanthine dehydrogenase [Homo sapiens] 27 9.4
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 27 9.4
>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
Length = 207
Score = 443 bits (1139), Expect = e-125
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MLLITLSANLFTVPERSLTTTFSFSRYKSSDRPAHKVSMLLLCHALAIAVVQIVIFSESW 60
MLLITLSANLFTVPERSLTTTFSFSRYKSSDRPAHKVSMLLLCHALAIAVVQIVIFSESW
Sbjct: 1 MLLITLSANLFTVPERSLTTTFSFSRYKSSDRPAHKVSMLLLCHALAIAVVQIVIFSESW 60
Query: 61 AFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHF 120
AFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHF
Sbjct: 61 AFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHF 120
Query: 121 TSHGRSTSITKKCASRSECHFVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVM 180
TSHGRSTSITKKCASRSECHFVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVM
Sbjct: 121 TSHGRSTSITKKCASRSECHFVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVM 180
Query: 181 HAQRTSGSSAPTLYLPVLAWVFVLPLL 207
HAQRTSGSSAPTLYLPVLAWVFVLPLL
Sbjct: 181 HAQRTSGSSAPTLYLPVLAWVFVLPLL 207
>gi|34996523 LY6/PLAUR domain containing 6 [Homo sapiens]
Length = 171
Score = 130 bits (328), Expect = 6e-31
Identities = 55/101 (54%), Positives = 63/101 (62%)
Query: 78 TPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137
TP+P FKCFTCE A DNY CNRWA D +CP+ T+YC T H G S S+TK+C
Sbjct: 41 TPYPGGFKCFTCEKAADNYECNRWAPDIYCPRETRYCYTQHTMEVTGNSISVTKRCVPLE 100
Query: 138 ECHFVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFA 178
EC GC S H C SCCEG ICN+ LP N T+A FA
Sbjct: 101 ECLSTGCRDSEHEGHKVCTSCCEGNICNLPLPRNETDATFA 141
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.6 bits (83), Expect = 0.015
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 79 PFPNSFKCFTCENAGDN-YNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137
P + C C GDN +N R CP YC+T + + R ++K C R
Sbjct: 16 PLAQALDCHVCAYNGDNCFNPMR------CPAMVAYCMTTRTYYTPTRM-KVSKSCVPRC 68
Query: 138 -ECHFVGCHHSRDSEHTECRSCCEGMICN 165
E + G S+H SCC+ +CN
Sbjct: 69 FETVYDGY-----SKHASTTSCCQYDLCN 92
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.6 bits (83), Expect = 0.015
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 79 PFPNSFKCFTCENAGDN-YNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137
P + C C GDN +N R CP YC+T + + R ++K C R
Sbjct: 16 PLAQALDCHVCAYNGDNCFNPMR------CPAMVAYCMTTRTYYTPTRM-KVSKSCVPRC 68
Query: 138 -ECHFVGCHHSRDSEHTECRSCCEGMICN 165
E + G S+H SCC+ +CN
Sbjct: 69 FETVYDGY-----SKHASTTSCCQYDLCN 92
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.6 bits (83), Expect = 0.015
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 79 PFPNSFKCFTCENAGDN-YNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRS 137
P + C C GDN +N R CP YC+T + + R ++K C R
Sbjct: 16 PLAQALDCHVCAYNGDNCFNPMR------CPAMVAYCMTTRTYYTPTRM-KVSKSCVPRC 68
Query: 138 -ECHFVGCHHSRDSEHTECRSCCEGMICN 165
E + G S+H SCC+ +CN
Sbjct: 69 FETVYDGY-----SKHASTTSCCQYDLCN 92
>gi|46410931 attractin-like 1 [Homo sapiens]
Length = 1379
Score = 34.3 bits (77), Expect = 0.077
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 58 ESWAFAKNINFYNVR-PPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWC-PQNTQYCL 115
ESW N + PP ++ C + N N +W +DK C N+ +
Sbjct: 641 ESWESGNTNNILRAKCPPKTAASDDRCYRYADCASCTANTNGCQWCDDKKCISANSNCSM 700
Query: 116 TVHHFTS-HGRSTSITKKCASRSECHFVGCHHSRDSEHTECRS-----CCEG 161
+V ++T H R+ I K S C + + D EC++ C EG
Sbjct: 701 SVKNYTKCHVRNEQICNKLTSCKSCS-LNLNCQWDQRQQECQALPAHLCGEG 751
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 33.9 bits (76), Expect = 0.100
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 83 SFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECHFV 142
S +C C D +NC + CP + + C+T+ + R + K C + C FV
Sbjct: 28 SLRCHDCAVIND-FNC---PNIRVCPYHIRRCMTIS-IRINSRELLVYKNCTNN--CTFV 80
Query: 143 ----------GCHHSRDSEHTECRSCCEGMICNVELPTN 171
G +S + C CC M+CN PTN
Sbjct: 81 YAAEQPPEAPGKIFKTNSFYWVC--CCNSMVCNAGGPTN 117
>gi|50845403 lymphocyte antigen 6 complex G5C [Homo sapiens]
Length = 147
Score = 33.5 bits (75), Expect = 0.13
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
Query: 50 VVQIVIFSESWAFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQ 109
V+ IV+ S F K + N PP P PFP +C+ C C ++ P
Sbjct: 25 VLLIVLVMMSLVFGKFVPV-NWEPP-QPLPFPKYLRCYRCLLETKELGCLLGSDICLTPA 82
Query: 110 NTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDS 150
+ C+T+H S G ++ RS+ C ++R S
Sbjct: 83 GSS-CITLHKKNSSGSDVMVSD---CRSKEQMSDCSNTRTS 119
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 31.6 bits (70), Expect = 0.50
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 88 TCENAGDNYNCNRW--------------AEDKWCPQNTQYCLTVHHFTSHGRSTSITKKC 133
TCE++ DNY C+ W C N + C+ + +GR T +
Sbjct: 315 TCEDSVDNYTCHCWPGYTGAQCEIDLNECNSNPCQSNGE-CVELSSEKQYGRITGLPSSF 373
Query: 134 ----ASRSEC----HFVGCHHSRDSEHTECRSCCEGMICNVELPTNHT 173
AS C F G H D C G C LP N+T
Sbjct: 374 SYHEASGYVCICQPGFTGIHCEEDVNECSSNPCQNGGTCE-NLPGNYT 420
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 31.6 bits (70), Expect = 0.50
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Query: 80 FPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSEC 139
F +C+ CE N +C+ C N Q + K CAS + C
Sbjct: 19 FALQIQCYQCEEFQLNNDCSSPEFIVNCTVNVQD-MCQKEVMEQSAGIMYRKSCASSAAC 77
Query: 140 HFVGCHH----SRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTS 186
+ S ++ C SCC +CN P ++ A+ RT+
Sbjct: 78 LIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTT 128
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 30.8 bits (68), Expect = 0.85
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 95 NYNCNRW-AEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDSEHT 153
+Y+C R K+C + Y HH K+ + CHF C S S H
Sbjct: 1456 HYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTSTHF 1515
Query: 154 ECRSC 158
C C
Sbjct: 1516 HCLRC 1520
>gi|83716019 zinc finger protein 284 [Homo sapiens]
Length = 593
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 85 KCFTC---------ENAGDN-YNCN------RWAEDKWCPQNTQYCLTVHHFTSHGRSTS 128
+ FTC ++ GD YNCN RW+ CL+ H +G +T
Sbjct: 350 RSFTCRQDLCKHQMDHTGDKPYNCNVCGKGFRWSS----------CLSRHQRVHNGETTF 399
Query: 129 ITKKCASRSECHFVGCHHS---RDSEHTECRSCCEGMICNVEL 168
C R + G H R+ E +C+ C +G I L
Sbjct: 400 KCDGCGKRFYMNSQGHSHQRAYREEELYKCQKCGKGYISKFNL 442
>gi|109715866 FERM domain containing 6 [Homo sapiens]
Length = 614
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 133 CASRSECHFVGCHHSRDSEHTECRSCCEGMICNVE--LPTNHTNAVFAV 179
C ++ + GC H D E C SC N++ P T+ F++
Sbjct: 554 CQDTAQSYTFGCGHELDEEGLYCNSCLAQQCINIQDAFPVKRTSKYFSL 602
>gi|22748721 FERM domain containing 6 [Homo sapiens]
Length = 614
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 133 CASRSECHFVGCHHSRDSEHTECRSCCEGMICNVE--LPTNHTNAVFAV 179
C ++ + GC H D E C SC N++ P T+ F++
Sbjct: 554 CQDTAQSYTFGCGHELDEEGLYCNSCLAQQCINIQDAFPVKRTSKYFSL 602
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 28.9 bits (63), Expect = 3.2
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 74 PLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKC 133
P DP + + K F E+ Y+ R + K +NT SH S+S T
Sbjct: 370 PSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLSSSSTSTS 429
Query: 134 ASRSECHFVGCHHSRDSEHTECRSCCEGMI 163
+S + +D E C C GM+
Sbjct: 430 SSENSI--------KDEEEQMCPICLLGML 451
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 28.5 bits (62), Expect = 4.2
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 88 TCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHS 147
TC N YNC + V+ +T S +I CAS + H CH
Sbjct: 311 TCHNTHGGYNC----------------VCVNGWTGEDCSENIDD-CASAACFHGATCHDR 353
Query: 148 RDSEHTECRSCCEGMICNV 166
S + EC G++C++
Sbjct: 354 VASFYCECPHGRTGLLCHL 372
>gi|29294615 sweet taste receptor T1r isoform b [Homo sapiens]
Length = 841
Score = 28.5 bits (62), Expect = 4.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 84 FKCFTCE-----NAGDNYNCNRWAEDKWCPQNTQYC 114
F+C C N D Y C +++W P+ +Q C
Sbjct: 517 FECVPCGAGTFLNKSDLYRCQPCGKEEWAPEGSQTC 552
>gi|29294619 sweet taste receptor T1r isoform c [Homo sapiens]
Length = 587
Score = 28.5 bits (62), Expect = 4.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 84 FKCFTCE-----NAGDNYNCNRWAEDKWCPQNTQYC 114
F+C C N D Y C +++W P+ +Q C
Sbjct: 263 FECVPCGAGTFLNKSDLYRCQPCGKEEWAPEGSQTC 298
>gi|28274686 zinc finger protein 82 homolog [Homo sapiens]
Length = 532
Score = 28.5 bits (62), Expect = 4.2
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 115 LTVHHFTSHGRSTSITKKC--ASRSECHFVGCHHSRDSEHT-ECRSCCEGMICNVEL 168
LT HH G K+C A R H E EC+ C E IC +L
Sbjct: 185 LTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKLYECKECGEAFICGADL 241
>gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens]
Length = 381
Score = 28.1 bits (61), Expect = 5.5
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 94 DNYNCNRWAEDKWCPQNTQYC-LTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDSEH 152
DN C E + C + C V+ G+ S TKK + GC +
Sbjct: 254 DNPECRLVKETRIC--EVRPCGQPVYSSLKKGKKCSKTKKSPEPVRFTYAGCLSVKKYRP 311
Query: 153 TECRSCCEGMICNVEL 168
C SC +G C +L
Sbjct: 312 KYCGSCVDGRCCTPQL 327
>gi|20336184 paired basic amino acid cleaving system 4 isoform h
preproprotein [Homo sapiens]
Length = 962
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 98 CNRWAEDKWCP-QNTQYCLTVHHFTSHGRSTSITKKCASRS--------------ECHFV 142
C+ DK C N CL HF+ TS +KC S CH
Sbjct: 682 CHPECGDKGCDGPNADQCLNCVHFSLGSVKTS--RKCVSVCPLGYFGDTAARRCRRCH-K 738
Query: 143 GCHHSRDSEHTECRSCCEGMICNVELPT 170
GC T+C SC G + E+ T
Sbjct: 739 GCETCSSRAATQCLSCRRGFYHHQEMNT 766
>gi|20336182 paired basic amino acid cleaving system 4 isoform g
preproprotein [Homo sapiens]
Length = 975
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 98 CNRWAEDKWCP-QNTQYCLTVHHFTSHGRSTSITKKCASRS--------------ECHFV 142
C+ DK C N CL HF+ TS +KC S CH
Sbjct: 695 CHPECGDKGCDGPNADQCLNCVHFSLGSVKTS--RKCVSVCPLGYFGDTAARRCRRCH-K 751
Query: 143 GCHHSRDSEHTECRSCCEGMICNVELPT 170
GC T+C SC G + E+ T
Sbjct: 752 GCETCSSRAATQCLSCRRGFYHHQEMNT 779
>gi|4505577 paired basic amino acid cleaving system 4 isoform a
preproprotein [Homo sapiens]
Length = 969
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 98 CNRWAEDKWCP-QNTQYCLTVHHFTSHGRSTSITKKCASRS--------------ECHFV 142
C+ DK C N CL HF+ TS +KC S CH
Sbjct: 695 CHPECGDKGCDGPNADQCLNCVHFSLGSVKTS--RKCVSVCPLGYFGDTAARRCRRCH-K 751
Query: 143 GCHHSRDSEHTECRSCCEGMICNVELPT 170
GC T+C SC G + E+ T
Sbjct: 752 GCETCSSRAATQCLSCRRGFYHHQEMNT 779
>gi|20336180 paired basic amino acid cleaving system 4 isoform b
preproprotein [Homo sapiens]
Length = 956
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 18/88 (20%)
Query: 98 CNRWAEDKWCP-QNTQYCLTVHHFTSHGRSTSITKKCASRS--------------ECHFV 142
C+ DK C N CL HF+ TS +KC S CH
Sbjct: 682 CHPECGDKGCDGPNADQCLNCVHFSLGSVKTS--RKCVSVCPLGYFGDTAARRCRRCH-K 738
Query: 143 GCHHSRDSEHTECRSCCEGMICNVELPT 170
GC T+C SC G + E+ T
Sbjct: 739 GCETCSSRAATQCLSCRRGFYHHQEMNT 766
>gi|237512949 zinc finger protein 138 isoform 1 [Homo sapiens]
Length = 293
Score = 27.7 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 98 CNRWAEDKWCPQNTQ---YCLTVHHFTSHG-RSTSITKKCASRSEC 139
C+R+A+D W QN + +T+ + +G ++ + K C S EC
Sbjct: 46 CSRFAQDLWLEQNIKDSFQKVTLSRYGKYGHKNLQLRKGCKSVDEC 91
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 27.7 bits (60), Expect = 7.2
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 82 NSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGR----STSITKKCASRS 137
+S CF+C N N C + C YC+TV G S++K C+
Sbjct: 19 SSLMCFSCLNQKSNLYC---LKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPAC 75
Query: 138 ECHFVGCHHSRDSEHTECRSCCEGMICN 165
G + S SCC+ +CN
Sbjct: 76 PIP-EGVNVGVASMGI---SCCQSFLCN 99
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 27.7 bits (60), Expect = 7.2
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 82 NSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGR----STSITKKCASRS 137
+S CF+C N N C + C YC+TV G S++K C+
Sbjct: 19 SSLMCFSCLNQKSNLYC---LKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKTCSPAC 75
Query: 138 ECHFVGCHHSRDSEHTECRSCCEGMICN 165
G + S SCC+ +CN
Sbjct: 76 PIP-EGVNVGVASMGI---SCCQSFLCN 99
>gi|116812604 LY6/PLAUR domain containing 1 isoform b [Homo sapiens]
Length = 89
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 131 KKCASRSECHFVGCHH----SRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTS 186
K CAS + C + S ++ C SCC +CN P ++ A+ RT+
Sbjct: 17 KSCASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTT 76
>gi|91823271 xanthine dehydrogenase [Homo sapiens]
Length = 1333
Score = 27.3 bits (59), Expect = 9.4
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 111 TQYCLTVHHFTSHGRSTSITKKCASRSECHFVGCHHSRDSEHTECRSCCEGMICNVELPT 170
T L V HF++ G + +++ R+ H C+ + T G +C LP+
Sbjct: 856 TVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGT-------GRLCKTNLPS 908
Query: 171 N 171
N
Sbjct: 909 N 909
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 27.3 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 85 KCFTCENAGDNYNCNRWAE--DKWCPQNTQYCLTVHHFTS 122
+CF G +C+ + DK CP +C VH+ TS
Sbjct: 32 RCFESFERGRECDCDAQCKKYDKCCPDYESFCAEVHNPTS 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.133 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,564,378
Number of Sequences: 37866
Number of extensions: 396184
Number of successful extensions: 1203
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 42
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.