Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LY6G5C Sequence: fasta or formatted (147aa) NCBI GI: 50845403
Description:

lymphocyte antigen 6 complex G5C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          4           1
 C cysteine            6.8         10           1
 D aspartate           4.1          6           1
 E glutamate           2.7          4           1
 F phenylalanine       5.4          8           1
 G glycine             6.8         10           1
 H histidine           1.4          2           1
 I isoleucine          2.7          4           1
 K lysine              4.1          6           2
 L leucine            12.2         18           2
 M methionine          3.4          5           2
 N asparagine          3.4          5           1
 P proline             8.8         13           2
 Q glutamine           4.1          6           1
 R arginine            3.4          5           1
 S serine             12.2         18           2
 T threonine           4.8          7           1
 V valine              6.1          9           1
 W tryptophan          1.4          2           1
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte antigen 6 complex G5C 
LY6G5B                0.080   lymphocyte antigen 6 complex G5B 
LYPD6B                0.028   LY6/PLAUR domain containing 6B 
LOC100293421          0.017   PREDICTED: hypothetical protein 
LOC100294485          0.017   PREDICTED: hypothetical protein 
PATE3                 0.014   prostate and testis expressed 3 
C3orf70               0.014   hypothetical protein LOC285382 
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.010   ATP-binding cassette sub-family G member 1 isoform 2...
MUC16                 0.010   mucin 16 
BMPR1B                0.010   bone morphogenetic protein receptor, type IB precurso...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform b precursor [Homo...
SPATA2                0.010   spermatogenesis associated 2 
SPATA2                0.010   spermatogenesis associated 2 
ACRV1                 0.010   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform j precursor [Homo...
ASTN2                 0.007   astrotactin 2 isoform c 
ASTN2                 0.007   astrotactin 2 isoform b 
ASTN2                 0.007   astrotactin 2 isoform a 
FBN3                  0.007   fibrillin 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press