Guide to the Human Genome
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Name: KCTD1 Sequence: fasta or formatted (257aa) NCBI GI: 40217617
Description:

potassium channel tetramerisation domain containing 1 isoform a

Referenced in:

Potassium Channels

Other entries for this name:
alt mRNA [257aa] potassium channel tetramerisation domain containing 1 isoform a
alt prot [865aa] potassium channel tetramerisation domain containing 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          7           1
 C cysteine            1.9          5           1
 D aspartate           5.8         15           2
 E glutamate           6.6         17           2
 F phenylalanine       4.3         11           1
 G glycine             6.6         17           3
 H histidine           2.3          6           1
 I isoleucine          5.8         15           1
 K lysine              3.5          9           1
 L leucine            10.9         28           2
 M methionine          2.3          6           1
 N asparagine          3.5          9           2
 P proline             6.6         17           1
 Q glutamine           4.7         12           2
 R arginine            8.6         22           2
 S serine              7.8         20           2
 T threonine           5.1         13           1
 V valine              6.6         17           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing ... 
KCTD1                 1.000   potassium channel tetramerisation domain containing...
KCTD1                 1.000   potassium channel tetramerisation domain containing...
KCTD15                0.800   potassium channel tetramerisation domain containing...
KCTD15                0.800   potassium channel tetramerisation domain containing...
KCTD15                0.654   potassium channel tetramerisation domain containing...
KCTD6                 0.170   potassium channel tetramerisation domain containing...
KCTD6                 0.170   potassium channel tetramerisation domain containing...
KCTD21                0.154   potassium channel tetramerisation domain containing ...
KCTD4                 0.126   potassium channel tetramerisation domain containing...
KCNRG                 0.102   potassium channel regulator isoform 2 
KCNRG                 0.102   potassium channel regulator isoform 1 
KCTD12                0.094   potassium channel tetramerisation domain containing ...
KCTD16                0.090   potassium channel tetramerisation domain containing ...
KCTD8                 0.088   potassium channel tetramerisation domain containing ...
KCTD19                0.086   potassium channel tetramerisation domain containing...
KCTD7                 0.074   potassium channel tetramerisation domain containing ...
KCTD14                0.072   potassium channel tetramerisation domain containing...
KCTD11                0.066   potassium channel tetramerisation domain containing ...
KCTD10                0.064   potassium channel tetramerisation domain containing ...
KCTD18                0.058   potassium channel tetramerization domain containing ...
SHKBP1                0.056   SH3KBP1 binding protein 1 
TNFAIP1               0.054   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCTD13                0.052   potassium channel tetramerisation domain containing ...
KCTD17                0.050   potassium channel tetramerisation domain containing...
KCND1                 0.048   potassium voltage-gated channel, Shal-related subfam...
KCNS3                 0.048   potassium voltage-gated channel delayed-rectifier pr...
KCTD2                 0.048   potassium channel tetramerisation domain containing ...
KCND2                 0.044   potassium voltage-gated channel, Shal-related subfami...
KCTD3                 0.044   potassium channel tetramerisation domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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