Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCTD18 Sequence: fasta or formatted (426aa) NCBI GI: 45387953
Description:

potassium channel tetramerization domain containing 18

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         41           2
 C cysteine            2.1          9           1
 D aspartate           4.0         17           1
 E glutamate           6.3         27           3
 F phenylalanine       2.6         11           1
 G glycine             7.7         33           2
 H histidine           2.1          9           1
 I isoleucine          4.2         18           2
 K lysine              6.6         28           2
 L leucine             8.9         38           2
 M methionine          1.6          7           2
 N asparagine          3.8         16           2
 P proline             6.1         26           2
 Q glutamine           2.8         12           1
 R arginine            6.8         29           2
 S serine              8.2         35           1
 T threonine           6.6         28           1
 V valine              5.2         22           1
 W tryptophan          1.2          5           1
 Y tyrosine            3.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerization domain containing ... 
KCTD21                0.068   potassium channel tetramerisation domain containing ...
KCTD6                 0.060   potassium channel tetramerisation domain containing...
KCTD6                 0.060   potassium channel tetramerisation domain containing...
KCTD12                0.051   potassium channel tetramerisation domain containing ...
KCTD7                 0.048   potassium channel tetramerisation domain containing ...
KCTD16                0.047   potassium channel tetramerisation domain containing ...
TNFAIP1               0.044   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCTD4                 0.044   potassium channel tetramerisation domain containing...
KCTD10                0.043   potassium channel tetramerisation domain containing ...
KCTD8                 0.042   potassium channel tetramerisation domain containing ...
KCTD9                 0.036   potassium channel tetramerisation domain containing ...
KCNRG                 0.036   potassium channel regulator isoform 2 
KCNRG                 0.036   potassium channel regulator isoform 1 
KCTD1                 0.035   potassium channel tetramerisation domain containing...
KCTD1                 0.035   potassium channel tetramerisation domain containing...
KCTD1                 0.035   potassium channel tetramerisation domain containing ...
KCTD3                 0.035   potassium channel tetramerisation domain containing ...
KCTD13                0.035   potassium channel tetramerisation domain containing ...
KCTD17                0.033   potassium channel tetramerisation domain containing...
SHKBP1                0.033   SH3KBP1 binding protein 1 
KCTD15                0.032   potassium channel tetramerisation domain containing...
KCTD15                0.032   potassium channel tetramerisation domain containing...
KCTD15                0.032   potassium channel tetramerisation domain containing...
KCTD5                 0.029   potassium channel tetramerisation domain containing 5...
KCTD14                0.029   potassium channel tetramerisation domain containing...
KCTD2                 0.026   potassium channel tetramerisation domain containing ...
LOC647013             0.025   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.025   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.025   PREDICTED: similar to potassium channel tetramerisa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press