Guide to the Human Genome
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Name: TNFAIP1 Sequence: fasta or formatted (316aa) NCBI GI: 10863937
Description:

tumor necrosis factor, alpha-induced protein 1

Referenced in:

Potassium Channels
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         12           1
 C cysteine            2.8          9           2
 D aspartate           6.0         19           2
 E glutamate           7.3         23           3
 F phenylalanine       2.8          9           1
 G glycine             6.0         19           3
 H histidine           1.9          6           1
 I isoleucine          5.4         17           2
 K lysine              7.3         23           2
 L leucine            10.8         34           2
 M methionine          1.9          6           1
 N asparagine          4.4         14           2
 P proline             3.2         10           1
 Q glutamine           3.8         12           1
 R arginine            7.0         22           2
 S serine              7.9         25           2
 T threonine           6.6         21           2
 V valine              5.4         17           2
 W tryptophan          0.6          2           1
 Y tyrosine            5.1         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 1 [Homo... 
KCTD10                0.675   potassium channel tetramerisation domain containing ...
KCTD13                0.635   potassium channel tetramerisation domain containing ...
KCTD21                0.086   potassium channel tetramerisation domain containing ...
KCTD6                 0.076   potassium channel tetramerisation domain containing...
KCTD6                 0.076   potassium channel tetramerisation domain containing...
KCTD7                 0.071   potassium channel tetramerisation domain containing ...
KCTD18                0.060   potassium channel tetramerization domain containing ...
KCTD4                 0.060   potassium channel tetramerisation domain containing...
KCTD17                0.057   potassium channel tetramerisation domain containing...
KCTD2                 0.057   potassium channel tetramerisation domain containing ...
KCTD5                 0.057   potassium channel tetramerisation domain containing 5...
KCTD14                0.049   potassium channel tetramerisation domain containing...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD15                0.049   potassium channel tetramerisation domain containing...
KCTD8                 0.047   potassium channel tetramerisation domain containing ...
KCTD16                0.047   potassium channel tetramerisation domain containing ...
KCTD1                 0.044   potassium channel tetramerisation domain containing...
KCTD1                 0.044   potassium channel tetramerisation domain containing...
KCTD1                 0.044   potassium channel tetramerisation domain containing ...
KCTD12                0.044   potassium channel tetramerisation domain containing ...
SHKBP1                0.041   SH3KBP1 binding protein 1 
KCTD3                 0.041   potassium channel tetramerisation domain containing ...
KCTD9                 0.036   potassium channel tetramerisation domain containing ...
KCNRG                 0.036   potassium channel regulator isoform 2 
KCNRG                 0.036   potassium channel regulator isoform 1 
LOC647013             0.032   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.032   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.032   PREDICTED: similar to potassium channel tetramerisa...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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