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Search of human proteins with 40068051
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40068051 cyclin M2 isoform 3 [Homo sapiens]
(552 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40068051 cyclin M2 isoform 3 [Homo sapiens] 1111 0.0
gi|40068055 cyclin M2 isoform 2 [Homo sapiens] 1084 0.0
gi|40068053 cyclin M2 isoform 1 [Homo sapiens] 1084 0.0
gi|94681046 cyclin M4 [Homo sapiens] 533 e-151
gi|157412263 cyclin M1 [Homo sapiens] 365 e-101
gi|40068047 cyclin M3 isoform 2 [Homo sapiens] 249 4e-66
gi|40068049 cyclin M3 isoform 1 [Homo sapiens] 247 2e-65
gi|73476377 LBXCOR1 homolog [Homo sapiens] 39 0.016
gi|84570137 homeobox B3 [Homo sapiens] 37 0.036
gi|7710121 engrailed homeobox 2 [Homo sapiens] 37 0.062
gi|89257348 homeo box HB9 [Homo sapiens] 37 0.062
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 35 0.18
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 35 0.18
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 35 0.23
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 34 0.31
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 34 0.40
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 34 0.40
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 33 0.68
gi|239757697 PREDICTED: hypothetical protein XP_002345524 [Homo ... 33 0.89
gi|239752182 PREDICTED: hypothetical protein [Homo sapiens] 33 0.89
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 33 0.89
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 33 0.89
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 33 0.89
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 32 1.2
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 32 1.2
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 32 1.2
gi|20336188 paired basic amino acid cleaving system 4 isoform e ... 32 1.2
gi|20336186 paired basic amino acid cleaving system 4 isoform c ... 32 1.2
gi|27894285 paired basic amino acid cleaving system 4 isoform f ... 32 1.2
gi|20336190 paired basic amino acid cleaving system 4 isoform d ... 32 1.2
>gi|40068051 cyclin M2 isoform 3 [Homo sapiens]
Length = 552
Score = 1111 bits (2874), Expect = 0.0
Identities = 552/552 (100%), Positives = 552/552 (100%)
Query: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA
Sbjct: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
Query: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF
Sbjct: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
Query: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL
Sbjct: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
Query: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED
Sbjct: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
Query: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN
Sbjct: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
Query: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP
Sbjct: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
Query: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV
Sbjct: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
Query: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR
Sbjct: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
Query: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK
Sbjct: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
Query: 541 EHTNKKPKSYQH 552
EHTNKKPKSYQH
Sbjct: 541 EHTNKKPKSYQH 552
>gi|40068055 cyclin M2 isoform 2 [Homo sapiens]
Length = 853
Score = 1084 bits (2804), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA
Sbjct: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
Query: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF
Sbjct: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
Query: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL
Sbjct: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
Query: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED
Sbjct: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
Query: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN
Sbjct: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
Query: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP
Sbjct: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
Query: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV
Sbjct: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
Query: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR
Sbjct: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
Query: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK
Sbjct: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
>gi|40068053 cyclin M2 isoform 1 [Homo sapiens]
Length = 875
Score = 1084 bits (2804), Expect = 0.0
Identities = 540/540 (100%), Positives = 540/540 (100%)
Query: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA
Sbjct: 1 MIGCGACEPKVKMAGGQAAAALPTWKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGA 60
Query: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF
Sbjct: 61 GGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNINNETWSRIAF 120
Query: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL
Sbjct: 121 TEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL 180
Query: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED
Sbjct: 181 RKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGED 240
Query: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN
Sbjct: 241 TKMIVGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKN 300
Query: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP
Sbjct: 301 YAKRIEPVRRQGNYLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIVIFGEIVP 360
Query: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV
Sbjct: 361 QAICSRHGLAVGANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV 420
Query: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR
Sbjct: 421 TDPYNDLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTR 480
Query: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK
Sbjct: 481 IPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
>gi|94681046 cyclin M4 [Homo sapiens]
Length = 775
Score = 533 bits (1373), Expect = e-151
Identities = 295/510 (57%), Positives = 358/510 (70%), Gaps = 56/510 (10%)
Query: 37 GRGILQAAAGRLL----PLLLLSCCCGAGGCAAVGENEETVIIGLRLEDTN-DVSFMEGG 91
GR + A GRLL LL+L GA G G ++ I+G+RL N G
Sbjct: 8 GRPVGGPARGRLLLAAPVLLVLLWALGARG---QGSPQQGTIVGMRLASCNKSCGTNPDG 64
Query: 92 ALRVSERTRVKLRVYGQNINNETWSRIAFTEHERRRHSPGERGLGGPAPPEPDSGPQRCG 151
+ VSE + V LR+YG ++ N + + I+FTE + E C
Sbjct: 65 IIFVSEGSTVNLRLYGYSLGNISSNLISFTEVD---------------DAETLHKSTSCL 109
Query: 152 IRTSDIIILPHIILNR-RTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGG 210
T D+++ + ++R TSG++ + K LR+ E K Y LCT
Sbjct: 110 ELTKDLVVQQLVNVSRGNTSGVLVVLTKFLRRSESMKLYALCTRAQ-------------- 155
Query: 211 AVGGKGGSGVAGLPPPPWAETTWIYHDGEDTKMIVGEEKKFLLPFWLQVIFISLLLCLSG 270
P PW + T +D+ + + EE LP WL ++ I++LL LSG
Sbjct: 156 -------------PDGPWLKWT-----DKDSLLFMVEEPGRFLPLWLHILLITVLLVLSG 197
Query: 271 MFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGNYLLCSLLLGNVLVNTTL 330
+FSGLNLGLMALDPMELRIVQNCGTEKE+ YA++IEP+RR+GNYLLCSLLLGNVLVNT+L
Sbjct: 198 IFSGLNLGLMALDPMELRIVQNCGTEKERRYARKIEPIRRKGNYLLCSLLLGNVLVNTSL 257
Query: 331 TILLDDIAGSGLVAVVVSTIGIVIFGEIVPQAICSRHGLAVGANTIFLTKFFMMMTFPAS 390
TILLD++ GSGL+AV STIGIVIFGEI+PQA+CSRHGLAVGANTI LTKFFM++TFP S
Sbjct: 258 TILLDNLIGSGLMAVASSTIGIVIFGEILPQALCSRHGLAVGANTILLTKFFMLLTFPLS 317
Query: 391 YPVSKLLDCVLGQEIGTVYNREKLLEMLRVTDPYNDLVKEELNIIQGALELRTKTVEDVM 450
+P+SKLLD LGQEI TVYNREKL+EML+VT+PYNDLVKEELN+IQGALELRTKTVED+M
Sbjct: 318 FPISKLLDFFLGQEIRTVYNREKLMEMLKVTEPYNDLVKEELNMIQGALELRTKTVEDIM 377
Query: 451 TPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTP 510
T L+DCFMI +AILDFNTMSEIMESGYTRIPVFE E+SNIVD+L+VKDLAFVDPDDCTP
Sbjct: 378 TQLQDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTP 437
Query: 511 LKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
LKTIT+FYNHP+HFVF+DTKLDAMLEEFKK
Sbjct: 438 LKTITRFYNHPVHFVFHDTKLDAMLEEFKK 467
>gi|157412263 cyclin M1 [Homo sapiens]
Length = 951
Score = 365 bits (937), Expect = e-101
Identities = 227/515 (44%), Positives = 296/515 (57%), Gaps = 80/515 (15%)
Query: 74 IIGLRLEDT--NDVSFMEGGALRVSERTRVKLRVY-------------------GQNINN 112
++GLR EDT VS +EGG LR +E T LRVY G+N
Sbjct: 42 LLGLRPEDTAGGRVS-LEGGTLRAAEGTSFLLRVYFQPGPPATAAPVPSPTLNSGENGTG 100
Query: 113 ETWSRIAFTEHERRRHSPGERGLGGPAPPEPDSGPQRCGIRT---SDIIIL-PHIILNRR 168
+ R+ F E PG G+ A P GPQRC ++ SD+ +L P
Sbjct: 101 DWAPRLVFIEEP-----PGGGGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVA 155
Query: 169 TSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPW 228
S ++++ ++ LRK E + GAGG GGK S A W
Sbjct: 156 GSALVQVRVRELRKGEAERG------------GAGG--------GGKLFSLCA------W 189
Query: 229 AETTWIYHDGEDTKMI------VGEEKKFLLPFWLQVIFISLLLCLSGMFSGLNLGLMAL 282
W +H ++ G L P WL+ + LLL LS +FSGL L L++L
Sbjct: 190 DGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSL 249
Query: 283 DPMELRIVQNCGTEKEKNYAKRIEPVRRQGNYLLCSLLLGNVLVNTTL-----TILLDDI 337
DP+ELR+++N G+ E+ A+R++ VR +G +LLC+LLLG N L T L
Sbjct: 250 DPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYTSLPPGF 309
Query: 338 AGSG-----------LVAVVVSTIGIVIFGEIVPQAICSRHGLAVGANTIFLTKFFMMMT 386
G+G + +V T + + EI P ++CSRHGLA+ ++++ LT+ M
Sbjct: 310 GGTGEDYSEEGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAA 369
Query: 387 FPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRVTDPYNDLVKEELNIIQGALELRTKTV 446
FP YP+ +LLD L QEI T Y REKLLE LR DPY+DLVKEELNIIQGALELRTK V
Sbjct: 370 FPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVV 429
Query: 447 EDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEG-ERSNIVDLLFVKDLAFVDP 505
E+V+TPL DCFM+ +A+LDF T+SEI+ SGYTRIPV+EG +R NIVD+LFVKDLAFVDP
Sbjct: 430 EEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDP 489
Query: 506 DDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
DDCTPL T+T+FYN PLH VFNDT+LD +LEEFKK
Sbjct: 490 DDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKK 524
>gi|40068047 cyclin M3 isoform 2 [Homo sapiens]
Length = 659
Score = 249 bits (637), Expect = 4e-66
Identities = 140/300 (46%), Positives = 194/300 (64%), Gaps = 17/300 (5%)
Query: 254 PFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGN 313
P W + + LL L+ + GL L +AL P E+++++ G+E E+ A+R+EP RR
Sbjct: 133 PPWALGLGAAGLLALAALARGLQLSALALAPAEVQVLRESGSEAERAAARRLEPARRWAG 192
Query: 314 YLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIV-IFGEIVPQAICSRHGLAVG 372
L +LLL L L +LL AG V V+ + G+V + GE+VP A+ R LA+
Sbjct: 193 CALGALLLLASLAQAALAVLLYRAAGQRAVPAVLGSAGLVFLVGEVVPAAVSGRWTLALA 252
Query: 373 ANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRVT-DPYNDLVKEE 431
+ L++ +++T P + PV +LL+ L G + RE++LE+ R DPY+DL K
Sbjct: 253 PRALGLSRLAVLLTLPVALPVGQLLE--LAARPGRL--RERVLELARGGGDPYSDLSKGV 308
Query: 432 LNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNI 491
L R +TVEDV+TPL DCFM+ +LDF ++ IM+SG+TRIPV+E ERSNI
Sbjct: 309 L---------RCRTVEDVLTPLEDCFMLDASTVLDFGVLASIMQSGHTRIPVYEEERSNI 359
Query: 492 VDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKEHT--NKKPKS 549
VD+L++KDLAFVDP+DCTPL TIT+FYNHPLHFVFNDTKLDA+LEEFK+ T +KP S
Sbjct: 360 VDMLYLKDLAFVDPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKRGDTVVKRKPAS 419
Score = 37.4 bits (85), Expect = 0.036
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 43 AAAGRLLPLLLLSCCCGAGGCAAVGENEETVIIGLRLEDTN--DVSFMEGGALRVSERTR 100
AAAGRL L C A G AA G ++G LE+ ++ GGA R +
Sbjct: 6 AAAGRLGWLFAALCLGNAAGEAAPGPR----VLGFCLEEDGAAGAGWVRGGAARDTPDAT 61
Query: 101 VKLRVYGQNINNETWSRIA 119
LR++G N +WS +A
Sbjct: 62 FLLRLFGPGFANSSWSWVA 80
>gi|40068049 cyclin M3 isoform 1 [Homo sapiens]
Length = 707
Score = 247 bits (631), Expect = 2e-65
Identities = 136/289 (47%), Positives = 189/289 (65%), Gaps = 15/289 (5%)
Query: 254 PFWLQVIFISLLLCLSGMFSGLNLGLMALDPMELRIVQNCGTEKEKNYAKRIEPVRRQGN 313
P W + + LL L+ + GL L +AL P E+++++ G+E E+ A+R+EP RR
Sbjct: 133 PPWALGLGAAGLLALAALARGLQLSALALAPAEVQVLRESGSEAERAAARRLEPARRWAG 192
Query: 314 YLLCSLLLGNVLVNTTLTILLDDIAGSGLVAVVVSTIGIV-IFGEIVPQAICSRHGLAVG 372
L +LLL L L +LL AG V V+ + G+V + GE+VP A+ R LA+
Sbjct: 193 CALGALLLLASLAQAALAVLLYRAAGQRAVPAVLGSAGLVFLVGEVVPAAVSGRWTLALA 252
Query: 373 ANTIFLTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRVT-DPYNDLVKEE 431
+ L++ +++T P + PV +LL+ L G + RE++LE+ R DPY+DL K
Sbjct: 253 PRALGLSRLAVLLTLPVALPVGQLLE--LAARPGRL--RERVLELARGGGDPYSDLSKGV 308
Query: 432 LNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNI 491
L R +TVEDV+TPL DCFM+ +LDF ++ IM+SG+TRIPV+E ERSNI
Sbjct: 309 L---------RCRTVEDVLTPLEDCFMLDASTVLDFGVLASIMQSGHTRIPVYEEERSNI 359
Query: 492 VDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK 540
VD+L++KDLAFVDP+DCTPL TIT+FYNHPLHFVFNDTKLDA+LEEFK+
Sbjct: 360 VDMLYLKDLAFVDPEDCTPLSTITRFYNHPLHFVFNDTKLDAVLEEFKR 408
Score = 37.4 bits (85), Expect = 0.036
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 43 AAAGRLLPLLLLSCCCGAGGCAAVGENEETVIIGLRLEDTN--DVSFMEGGALRVSERTR 100
AAAGRL L C A G AA G ++G LE+ ++ GGA R +
Sbjct: 6 AAAGRLGWLFAALCLGNAAGEAAPGPR----VLGFCLEEDGAAGAGWVRGGAARDTPDAT 61
Query: 101 VKLRVYGQNINNETWSRIA 119
LR++G N +WS +A
Sbjct: 62 FLLRLFGPGFANSSWSWVA 80
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 38.5 bits (88), Expect = 0.016
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 24/111 (21%)
Query: 132 ERGLG------GPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPL--RKM 183
+RGLG GPA P G G+R+ +I +P + G+++ PL
Sbjct: 301 QRGLGLATGASGPAGPGGPGGG--AGVRSYPVIPVPS-----KGFGLLQKLPPPLFPHPY 353
Query: 184 EKSKSYYLCTSLSTPALGAG------GSGSTGGAVG---GKGGSGVAGLPP 225
++ LC P LGAG G+GS GG G G GG G + LPP
Sbjct: 354 GFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGGAGTGGGAGGPGASHLPP 404
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 37.4 bits (85), Expect = 0.036
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 136 GGPAPPEPDSGPQRCGIRTSDII---ILPHIILNRRTSGIIEIEIKPLRKMEKSKSYYLC 192
GGP+ SGP +CG T+ + I P + +R+TS K K+
Sbjct: 107 GGPSK----SGPPKCGPGTNSTLTKQIFPWMKESRQTS--------------KLKNNSPG 148
Query: 193 TSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGEDTKMIVGEEKKF 251
T+ G GG G G GG GG G G PP + + + +V EK+F
Sbjct: 149 TAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEF 207
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 36.6 bits (83), Expect = 0.062
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 131 GERGLGGPAPPEPDSGPQRCGIRTSDIIILP--HIILNRRTSGIIEIEIKPLRKMEKSKS 188
G G GG +P E D+G +R + ++ P H +R T+ I+ ++P + + K
Sbjct: 28 GSGGGGGSSPGEADTGRRRA-LMLPAVLQAPGNHQHPHRITNFFIDNILRP--EFGRRKD 84
Query: 189 YYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAG 222
C + + G GG+G GGA G +GG G G
Sbjct: 85 AGTCCAGAGGGRG-GGAGGEGGASGAEGGGGAGG 117
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 36.6 bits (83), Expect = 0.062
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 166 NRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPP 225
N R ++ ++ P +S L TSL+ A G GG G GGA GG GS
Sbjct: 6 NFRIDALLAVD-PPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSE 64
Query: 226 PPWA 229
PP A
Sbjct: 65 PPAA 68
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 35.0 bits (79), Expect = 0.18
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 201 GAGGSGSTGGAVGGKGGSGVAGLPPPPWAETT 232
G GG G +GG G GG G + PP P TT
Sbjct: 232 GGGGGGGSGGGGSGGGGGGGSSRPPAPQENTT 263
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 35.0 bits (79), Expect = 0.18
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 201 GAGGSGSTGGAVGGKGGSGVAGLPPPPWAETT 232
G GG G +GG G GG G + PP P TT
Sbjct: 216 GGGGGGGSGGGGSGGGGGGGSSRPPAPQENTT 247
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 34.7 bits (78), Expect = 0.23
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 22/112 (19%)
Query: 128 HSPGERGLGGPAPPEPDSGPQRCGIRTSDIIILPHIILNRRTSGIIEIEIKPLRKMEKSK 187
H PG PAP P GP SGI E++ +S
Sbjct: 1646 HPPGPPAPAAPAPAAPQPGPDPPP---------------GTDSGIEEVD-------SRSS 1683
Query: 188 SYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGE 239
S + ++S+ + + S GG+ GG GG+G P +T Y DG+
Sbjct: 1684 SDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGPELLDTYVAYLDGQ 1735
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo
sapiens]
Length = 1343
Score = 34.3 bits (77), Expect = 0.31
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 171 GIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGG--SGSTGGAVGGKGGSGVAGLP 224
G++ + + L ++ +Y T L T + G+GG SG GG+ GG GG G G P
Sbjct: 344 GLVTVPVATLAGRHFTEQWYPVT-LPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCP 398
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 33.9 bits (76), Expect = 0.40
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 54 LSCCCGAGGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNIN-- 111
+ C G G + V ++ +R ++T+ + G L K+RV G+ N
Sbjct: 7 VGCTLGGPGLSGVSGLLGGEMVSVRPKETS-FQGSKRGRLAAGRGLGAKVRVVGRPGNSG 65
Query: 112 ------NETWSRIAFTEHERRRH-SPGERGLGGP-APPEPDSGPQRCGIRTSDIIILPHI 163
N W + R R P G GGP P P G +RC T+ +
Sbjct: 66 GRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVG 125
Query: 164 ILNRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGL 223
+ + R S + K+ S+S +GAGG G GG+G +G A
Sbjct: 126 VSDWRGSFL---------KLSSSRSTRGLVLGEGVGVGAGGEG------GGEGAAGAASS 170
Query: 224 PPPPWAETTWIYHDGEDTKMIVGE 247
+E + D +D+ V E
Sbjct: 171 LSERSSERVELQSDTDDSDTRVAE 194
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 33.9 bits (76), Expect = 0.40
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 54 LSCCCGAGGCAAVGENEETVIIGLRLEDTNDVSFMEGGALRVSERTRVKLRVYGQNIN-- 111
+ C G G + V ++ +R ++T+ + G L K+RV G+ N
Sbjct: 7 VGCTLGGPGLSGVSGLLGGEMVSVRPKETS-FQGSKRGRLAAGRGLGAKVRVVGRPGNSG 65
Query: 112 ------NETWSRIAFTEHERRRH-SPGERGLGGP-APPEPDSGPQRCGIRTSDIIILPHI 163
N W + R R P G GGP P P G +RC T+ +
Sbjct: 66 GRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVG 125
Query: 164 ILNRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAGGSGSTGGAVGGKGGSGVAGL 223
+ + R S + K+ S+S +GAGG G GG+G +G A
Sbjct: 126 VSDWRGSFL---------KLSSSRSTRGLVLGEGVGVGAGGEG------GGEGAAGAASS 170
Query: 224 PPPPWAETTWIYHDGEDTKMIVGE 247
+E + D +D+ V E
Sbjct: 171 LSERSSERVELQSDTDDSDTRVAE 194
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 33.1 bits (74), Expect = 0.68
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 195 LSTPALGAGGSGSTGGAVGGKGGSGVAGL 223
L P G GG GS G GG GG GV GL
Sbjct: 75 LLLPPPGGGGGGSAGSGGGGGGGVGVPGL 103
Score = 30.0 bits (66), Expect = 5.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 201 GAGGSGSTGGAVGGKGGSG 219
G GG GS+ G+ GG GGSG
Sbjct: 202 GGGGGGSSSGSSGGGGGSG 220
>gi|239757697 PREDICTED: hypothetical protein XP_002345524 [Homo
sapiens]
Length = 147
Score = 32.7 bits (73), Expect = 0.89
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 162 HIILNRRTSGIIEIEIKPLRKMEKSKSYY--LCTS----LSTPALGAGGSGST--GGAVG 213
+ IL++ S I I LR + S + + +C++ + A G+ GSGS A G
Sbjct: 32 YTILSKTPSSSIVISSSALRGLRPSGALFTRVCSAPLAASTAAARGSAGSGSICRTSAAG 91
Query: 214 GKGGSGVAGLPPPPWAETTWIYHDG 238
G GG AG AE W+ H G
Sbjct: 92 GAGGGAAAG------AEGRWVGHGG 110
>gi|239752182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 32.7 bits (73), Expect = 0.89
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 162 HIILNRRTSGIIEIEIKPLRKMEKSKSYY--LCTS----LSTPALGAGGSGST--GGAVG 213
+ IL++ S I I LR + S + + +C++ + A G+ GSGS A G
Sbjct: 32 YTILSKTPSSSIVISSSALRGLRPSGALFTRVCSAPLAASTAAARGSAGSGSICRTSAAG 91
Query: 214 GKGGSGVAGLPPPPWAETTWIYHDG 238
G GG AG AE W+ H G
Sbjct: 92 GAGGGAAAG------AEGRWVGHGG 110
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 32.7 bits (73), Expect = 0.89
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 199 ALGAGGSGSTGGAVGGKGGSGVAGLPPPPWA 229
AL GG G GG GG GG G G PW+
Sbjct: 64 ALSHGGGGGGGGGGGGGGGGGGGGGDGSPWS 94
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 32.7 bits (73), Expect = 0.89
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 195 LSTPALGAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGEDTKMIVGEEKKFLLP 254
L A GAGG+G GG A PP P+ + D ED++ + G L P
Sbjct: 1072 LGPGAGGAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSEDSESLGGASLGGLEP 1131
Query: 255 FW 256
+W
Sbjct: 1132 WW 1133
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 32.7 bits (73), Expect = 0.89
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 201 GAGGSGSTGGAVGGKGGSGVAGLPPPPWAETT 232
GAG G+ GA GG GGSG G +A T+
Sbjct: 38 GAGSGGAGSGAAGGTGGSGGGGFGAATFASTS 69
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 163 IILNRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAG-GSGSTGGAVGGKGGSGVA 221
I +N++ + IKP K +S+ LGAG G+G + G VG GG+G A
Sbjct: 935 IHINKKENPNQTAVIKPFPKSTESRG-----------LGAGAGAGGSAGGVGATGGAGCA 983
Query: 222 GLPP 225
G P
Sbjct: 984 GAGP 987
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 163 IILNRRTSGIIEIEIKPLRKMEKSKSYYLCTSLSTPALGAG-GSGSTGGAVGGKGGSGVA 221
I +N++ + IKP K +S+ LGAG G+G + G VG GG+G A
Sbjct: 903 IHINKKENPNQTAVIKPFPKSTESRG-----------LGAGAGAGGSAGGVGATGGAGCA 951
Query: 222 GLPP 225
G P
Sbjct: 952 GAGP 955
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 201 GAGGSGSTGGAVGGKGGSGVAGLPPPPWAETTWIYHDGEDTKMIVGEEKKFLLP 254
G GG G GG GG GG G AG P Y + + G+E F P
Sbjct: 455 GGGGGGGGGGGGGGGGGGGEAGAVAP--------YGYTRPPQGLAGQESDFTAP 500
Score = 29.6 bits (65), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 198 PALGAGGSGSTGGAVGGKGGSGVAG 222
P G GG G GG GG GG G G
Sbjct: 449 PCGGGGGGGGGGGGGGGGGGGGGGG 473
>gi|20336188 paired basic amino acid cleaving system 4 isoform e
preproprotein [Homo sapiens]
Length = 623
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 199 ALGAGGSGSTGGAVGGKGGSGVAGLPPPPW 228
A GAGG+G GGA GG G L P PW
Sbjct: 24 AAGAGGAGGAGGA----GGPGFRPLAPRPW 49
>gi|20336186 paired basic amino acid cleaving system 4 isoform c
preproprotein [Homo sapiens]
Length = 487
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 199 ALGAGGSGSTGGAVGGKGGSGVAGLPPPPW 228
A GAGG+G GGA GG G L P PW
Sbjct: 24 AAGAGGAGGAGGA----GGPGFRPLAPRPW 49
>gi|27894285 paired basic amino acid cleaving system 4 isoform f
preproprotein [Homo sapiens]
Length = 664
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 199 ALGAGGSGSTGGAVGGKGGSGVAGLPPPPW 228
A GAGG+G GGA GG G L P PW
Sbjct: 24 AAGAGGAGGAGGA----GGPGFRPLAPRPW 49
>gi|20336190 paired basic amino acid cleaving system 4 isoform d
preproprotein [Homo sapiens]
Length = 652
Score = 32.3 bits (72), Expect = 1.2
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 199 ALGAGGSGSTGGAVGGKGGSGVAGLPPPPW 228
A GAGG+G GGA GG G L P PW
Sbjct: 24 AAGAGGAGGAGGA----GGPGFRPLAPRPW 49
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,443,259
Number of Sequences: 37866
Number of extensions: 1081135
Number of successful extensions: 8984
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 7843
Number of HSP's gapped (non-prelim): 836
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.