Guide to the Human Genome
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Name: C14orf118 Sequence: fasta or formatted (482aa) NCBI GI: 40018646
Description:

hypothetical protein LOC55668 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {477aa} hypothetical protein LOC55668 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         40           3
 C cysteine            3.3         16           2
 D aspartate           5.8         28           2
 E glutamate           8.1         39           2
 F phenylalanine       2.9         14           2
 G glycine             4.1         20           1
 H histidine           3.3         16           1
 I isoleucine          1.5          7           2
 K lysine              6.6         32           2
 L leucine             7.1         34           2
 M methionine          1.7          8           1
 N asparagine          2.9         14           1
 P proline             5.8         28           2
 Q glutamine           3.7         18           2
 R arginine            9.1         44           4
 S serine             12.2         59           3
 T threonine           6.2         30           2
 V valine              4.1         20           1
 W tryptophan          1.9          9           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55668 isoform 1 
C14orf118             0.950   hypothetical protein LOC55668 isoform 2 
GPATCH2               0.196   G patch domain containing 2 
CDC2L2                0.015   cell division cycle 2-like 2 isoform 4 
PRPF40A               0.012   formin binding protein 3 
BTBD12                0.011   BTB (POZ) domain containing 12 
CDC2L1                0.010   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.010   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC645490             0.010   PREDICTED: similar to hCG1991922 
CDC2L1                0.010   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.010   cell division cycle 2-like 1 (PITSLRE proteins) isof...
FAM164A               0.009   hypothetical protein LOC51101 
CDC2L2                0.009   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.009   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CEP290                0.008   centrosomal protein 290kDa 
HIVEP3                0.008   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.008   human immunodeficiency virus type I enhancer bindin...
RSF1                  0.008   remodeling and spacing factor 1 
CATSPER2              0.008   sperm-associated cation channel 2 isoform 2 
LOC645490             0.007   PREDICTED: similar to hCG1991922 
KIAA1310              0.007   hypothetical protein LOC55683 isoform a 
KIAA1310              0.007   hypothetical protein LOC55683 isoform b 
LMLN                  0.007   leishmanolysin-like isoform 1 
LMLN                  0.007   leishmanolysin-like isoform 2 
LOC645490             0.007   PREDICTED: similar to hCG1991922 
LENG9                 0.007   leukocyte receptor cluster (LRC) member 9 
MDM2                  0.007   mouse double minute 2 homolog isoform MDM2f 
MDM2                  0.007   mouse double minute 2 homolog isoform MDM2 
CATSPER2              0.006   sperm-associated cation channel 2 isoform 1 
NHSL2                 0.006   NHS-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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