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Name: CATSPER2 Sequence: fasta or formatted (530aa) NCBI GI: 26051223
Description:

sperm-associated cation channel 2 isoform 2

Referenced in:

Calcium and TRP Cation Channels
Testes and Sperm

Other entries for this name:
alt prot [528aa] sperm-associated cation channel 2 isoform 1
alt prot [199aa] sperm-associated cation channel 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         23           2
 C cysteine            0.8          4           1
 D aspartate           3.6         19           2
 E glutamate           7.7         41           2
 F phenylalanine       5.8         31           2
 G glycine             2.1         11           1
 H histidine           1.9         10           1
 I isoleucine          7.0         37           3
 K lysine              4.3         23           2
 L leucine            15.3         81           3
 M methionine          2.6         14           2
 N asparagine          2.6         14           1
 P proline             2.6         14           2
 Q glutamine           5.8         31           2
 R arginine            6.8         36           2
 S serine             10.6         56           4
 T threonine           4.0         21           1
 V valine              7.4         39           3
 W tryptophan          2.5         13           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm-associated cation channel 2 isoform 2 
CATSPER2              0.992   sperm-associated cation channel 2 isoform 1 
CATSPER2              0.347   sperm-associated cation channel 2 isoform 4 
SCN5A                 0.075   voltage-gated sodium channel type V alpha isoform d...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.075   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1B               0.075   calcium channel, voltage-dependent, N type, alpha 1B ...
CATSPER4              0.073   cation channel, sperm associated 4 
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.073   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.072   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.072   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1H               0.071   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.071   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.070   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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