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Search of human proteins with 39930315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39930315 neurexophilin 4 [Homo sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39930315 neurexophilin 4 [Homo sapiens] 644 0.0
gi|23097338 neurexophilin 1 precursor [Homo sapiens] 213 2e-55
gi|52138515 neurexophilin 2 [Homo sapiens] 189 3e-48
gi|217330576 neurexophilin 3 [Homo sapiens] 113 2e-25
gi|21450781 hypothetical protein LOC91775 [Homo sapiens] 41 0.002
gi|197333800 hypothetical protein LOC91775 [Homo sapiens] 41 0.002
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 37 0.017
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ... 35 0.064
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 35 0.084
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 35 0.084
gi|126352608 elastin isoform e precursor [Homo sapiens] 35 0.11
gi|126352440 elastin isoform a precursor [Homo sapiens] 35 0.11
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 35 0.11
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 34 0.14
gi|126352700 elastin isoform b precursor [Homo sapiens] 34 0.19
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 33 0.24
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 33 0.24
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 33 0.24
gi|126352446 elastin isoform d precursor [Homo sapiens] 33 0.32
gi|126352322 elastin isoform c precursor [Homo sapiens] 33 0.32
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 33 0.32
gi|11967991 SRY-box 17 [Homo sapiens] 33 0.42
gi|119395754 keratin 5 [Homo sapiens] 33 0.42
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 33 0.42
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 33 0.42
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 33 0.42
gi|239752710 PREDICTED: similar to coiled-coil-helix-coiled-coil... 32 0.54
gi|239747238 PREDICTED: similar to coiled-coil-helix-coiled-coil... 32 0.54
gi|239741059 PREDICTED: similar to coiled-coil-helix-coiled-coil... 32 0.54
gi|48762934 alpha 2 type I collagen [Homo sapiens] 32 0.71
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 644 bits (1660), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MRLLPEWFLLLFGPWLLRKAVSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLG 60
MRLLPEWFLLLFGPWLLRKAVSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLG
Sbjct: 1 MRLLPEWFLLLFGPWLLRKAVSAQIPESGRPQYLGLRPAAAGAGAPGQQLPEPRSSDGLG 60
Query: 61 VGRAWSWAWPTNHTGALARAGAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKF 120
VGRAWSWAWPTNHTGALARAGAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKF
Sbjct: 61 VGRAWSWAWPTNHTGALARAGAAGALPAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKF 120
Query: 121 SLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTL 180
SLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTL
Sbjct: 121 SLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTL 180
Query: 181 ALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKT 240
ALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKT
Sbjct: 181 ALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKT 240
Query: 241 NRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNF 300
NRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNF
Sbjct: 241 NRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNF 300
Query: 301 QSEHPYFG 308
QSEHPYFG
Sbjct: 301 QSEHPYFG 308
>gi|23097338 neurexophilin 1 precursor [Homo sapiens]
Length = 271
Score = 213 bits (542), Expect = 2e-55
Identities = 114/257 (44%), Positives = 144/257 (56%), Gaps = 67/257 (26%)
Query: 51 PEPRSSDGLGVGRAWSWAWPTNHTGALARAGAAGALPAQRTKRKPSIKAARAKKIFGWGD 110
PEP S L W W N T P R KR+P +K + KK+FGWGD
Sbjct: 79 PEPYSEQDL-------WDWLRNSTDLQE--------PRPRAKRRPIVKTGKFKKMFGWGD 123
Query: 111 FYFRVHTLKFSLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEFGGVWLPG 170
F+ + T+K +LL+TGKIVDH NGTFSVYFRHNS+ GN+SVS+VPP+K VEF
Sbjct: 124 FHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFD------ 177
Query: 171 PVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAKESRA 230
LA + V+ AK+S++
Sbjct: 178 ---------LAQQTVID-------------------------------------AKDSKS 191
Query: 231 FNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFLSFDYKL 290
FNC +EYEK ++A K+ C YDPS+ C+ E TQS +WLC+KPFKVICI++SF S DYKL
Sbjct: 192 FNCRIEYEKVDKATKNTLCNYDPSKTCYQEQTQSHVSWLCSKPFKVICIYISFYSTDYKL 251
Query: 291 VQKVCPDYNFQSEHPYF 307
VQKVCPDYN+ S+ PYF
Sbjct: 252 VQKVCPDYNYHSDTPYF 268
>gi|52138515 neurexophilin 2 [Homo sapiens]
Length = 264
Score = 189 bits (479), Expect = 3e-48
Identities = 97/220 (44%), Positives = 123/220 (55%), Gaps = 52/220 (23%)
Query: 87 PAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNGTFSVYFRHNSSS 146
P RTKR+P +K + KK+FGWGDF+ + T+K +LL+TGKIVDH NGTFSVYFRHNS+
Sbjct: 93 PLARTKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFRHNSTG 152
Query: 147 LGNLSVSIVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGG 206
L V L PP + P
Sbjct: 153 -----------------------------------LGNVSVSLVPPSKVVEFEVSPQ--- 174
Query: 207 SLGGALAGPLGGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQA 266
KES++FNC +EYEKT+RA+K C +DPS++C+ E TQS
Sbjct: 175 --------------STLETKESKSFNCRIEYEKTDRAKKTALCNFDPSKICYQEQTQSHV 220
Query: 267 AWLCAKPFKVICIFVSFLSFDYKLVQKVCPDYNFQSEHPY 306
+WLC+KPFKVICI+++F S DYKLVQKVCPDYN+ SE PY
Sbjct: 221 SWLCSKPFKVICIYIAFYSVDYKLVQKVCPDYNYHSETPY 260
>gi|217330576 neurexophilin 3 [Homo sapiens]
Length = 252
Score = 113 bits (282), Expect = 2e-25
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 225 AKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQAAWLCAKPFKVICIFVSFL 284
AK S+ FNC +E+EK R R+ C +DP+++C +H QS A W C++PFKV+C++++F
Sbjct: 167 AKASKIFNCRMEWEKVERGRRTSLCTHDPAKICSRDHAQSSATWSCSQPFKVVCVYIAFY 226
Query: 285 SFDYKLVQKVCPDYNFQSEHPYF 307
S DY+LVQKVCPDYN+ S+ PY+
Sbjct: 227 STDYRLVQKVCPDYNYHSDTPYY 249
Score = 101 bits (252), Expect = 7e-22
Identities = 51/92 (55%), Positives = 64/92 (69%), Gaps = 4/92 (4%)
Query: 75 GALARAGAAGAL---PAQRTKRKPSIKAARAKKIFGWGDFYFRVHTLKFSLLVTGKIVDH 131
G LA G A + P R P +A+ KKIFGWGDFY + T+ +LLVTGKIVDH
Sbjct: 67 GLLAPPGEAWGILGQPPNRPNHSPP-PSAKVKKIFGWGDFYSNIKTVALNLLVTGKIVDH 125
Query: 132 VNGTFSVYFRHNSSSLGNLSVSIVPPSKRVEF 163
NGTFSV+F+HN++ GN+S+S+VPPSK VEF
Sbjct: 126 GNGTFSVHFQHNATGQGNISISLVPPSKAVEF 157
>gi|21450781 hypothetical protein LOC91775 [Homo sapiens]
Length = 559
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 101 RAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSK- 159
R K +G R+H+LK G++VD+ NG + V+F +SVS+V PS+
Sbjct: 134 RKPKKYGGDYLQARIHSLKLQAGAVGRVVDYQNGFYKVFFTLLWPGKVKVSVSLVHPSEG 193
Query: 160 -------------RVEFGGVWLPGPVPHPLQSTLALEGVLP 187
RV F ++ G + + + L G LP
Sbjct: 194 IRVLQRLQEDKPDRVYFKSLFRSGRISETTECNVCLPGNLP 234
>gi|197333800 hypothetical protein LOC91775 [Homo sapiens]
Length = 559
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 101 RAKKIFGWGDFYFRVHTLKFSLLVTGKIVDHVNGTFSVYFRHNSSSLGNLSVSIVPPSK- 159
R K +G R+H+LK G++VD+ NG + V+F +SVS+V PS+
Sbjct: 134 RKPKKYGGDYLQARIHSLKLQAGAVGRVVDYQNGFYKVFFTLLWPGKVKVSVSLVHPSEG 193
Query: 160 -------------RVEFGGVWLPGPVPHPLQSTLALEGVLP 187
RV F ++ G + + + L G LP
Sbjct: 194 IRVLQRLQEDKPDRVYFKSLFRSGRISETTECNVCLPGNLP 234
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 151
Score = 37.4 bits (85), Expect = 0.017
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 195 MAAAAAGPGLGGSLGGALAGPL-GGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDP 253
MA AAG +G ++G L + GG G A+ +R + E + T A++ +PCLY+
Sbjct: 59 MATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEI 118
Query: 254 SQVCFTEHTQSQ 265
Q F E Q+Q
Sbjct: 119 KQ--FLECAQNQ 128
>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
sapiens]
Length = 101
Score = 35.4 bits (80), Expect = 0.064
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 43 AGAPGQQLPEPRSSDGLGVGRAWSWAWPTNHTGALARAGAAGALPAQRTK 92
A APG + P ++ L R W W H AL G AGAL RT+
Sbjct: 28 APAPGVEWPRLAAAPALACHRRPRWRWTGRHLAALRGLGPAGALRRLRTR 77
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 35.0 bits (79), Expect = 0.084
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 150 LSVSIVP--PSKRVEFGGVWLPGP------VPHPLQSTLALEGVLPGL-------GPP-- 192
LS+ +P P ++ E G LPGP V P + + LPG GPP
Sbjct: 1511 LSIQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPGPPGP 1570
Query: 193 LGMAAAAAGPGLGGSLG--GALAGPLGGALGVPGAKESRAFNCHVEYEKTNRARKHRPC 249
+G+ PG+ GS+G GAL P GVPGAK R ++ + R+ + C
Sbjct: 1571 IGIPGTPGVPGITGSMGPQGALGPP-----GVPGAKGERGERGDLQSQAMVRSVARQVC 1624
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 35.0 bits (79), Expect = 0.084
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGP---------PLGMAAAAAGPGLG-----GSLGGALAG 214
PGP+P P+ + G LPG P P + A GP G G G + G
Sbjct: 96 PGPIPAPIPGPAQIPGPLPGSIPGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPG 155
Query: 215 PLGGALGVPG 224
P+ G +PG
Sbjct: 156 PISGPAPIPG 165
Score = 30.4 bits (67), Expect = 2.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 168 LPGPVPHPLQSTLALEGVLPGLGP-PLGMAAAAAGPG-----LGGSLGGALAGPLGGALG 221
+PGP+P P+ ++ G PG P P+ + PG + G G + GP+ G +
Sbjct: 203 IPGPIPGPISGPIS--GPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPIS 260
Query: 222 VPG 224
PG
Sbjct: 261 GPG 263
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGVP 223
PGP+ P + G LPGL P LG +GPG GS+ + GP G+L P
Sbjct: 284 PGPILSP--GRMRSPGSLPGLAPILG---PGSGPG-SGSVPAPIPGP--GSLPAP 330
Score = 30.0 bits (66), Expect = 2.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 16/72 (22%)
Query: 168 LPGPVPHPLQSTLALEGVLPGLGP-PLGMAAAAAGPGLG---------------GSLGGA 211
+P P+P P+ + + G G P P+ A GP G G + G
Sbjct: 131 IPAPIPGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGP 190
Query: 212 LAGPLGGALGVP 223
++GP+ G + VP
Sbjct: 191 ISGPIPGPISVP 202
Score = 28.5 bits (62), Expect = 7.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 169 PGPVPHPLQS------TLALEGVLPGLGPPLGMAAAAAGPG-LGGSLGGALAGPLGGALG 221
PGP+P P+ ++ + G +PG P+ + PG + G + G ++GP G +
Sbjct: 184 PGPIPGPISGPIPGPISVPIPGPIPG---PISGPISGPNPGPIPGPIPGPISGPNPGPIP 240
Query: 222 VP 223
P
Sbjct: 241 GP 242
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 186 LPGLG-----PPLGMAAAA--AGPGLGGSLGGALAGPLGGALGVPG 224
+PG+G PP A AA GLGG LGGA PLGG PG
Sbjct: 638 VPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPLGGVAARPG 683
Score = 33.9 bits (76), Expect = 0.19
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 147 LGNLSVS---IVP-PSKRVEFG---GVWLPGPVPHPLQSTLALEGV--LPGLGPPLGMAA 197
+G L VS +VP P V+ G GV LPG P + GV LPG+ P G
Sbjct: 118 VGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV--PTGAGV 175
Query: 198 AAAGPGLGGSLGGAL-AGPLGGAL-GVP 223
PG+GG+ G GP GG GVP
Sbjct: 176 KPKAPGVGGAFAGIPGVGPFGGPQPGVP 203
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 164 GGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA-------GPGLGGSLGGALAGPL 216
GG +PG VP + G + G+G P AAAAA G G GG GP
Sbjct: 278 GGAGVPG-VPGAIPGI----GGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGP- 331
Query: 217 GGALGVPGA 225
G +GVPGA
Sbjct: 332 -GVVGVPGA 339
Score = 29.3 bits (64), Expect = 4.6
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVP----HPLQSTLALEG--VLPGLGPPLGMAAAAAGPG 203
L +SI+ PS+ G +PG VP +P AL G + PG P + AG G
Sbjct: 16 LLLSILHPSRPGGVPGA-IPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAG 74
Query: 204 LGGSLGGALAGPLGGALGVPG 224
LG LG A GAL VPG
Sbjct: 75 LGAGLGAFPAVTFPGAL-VPG 94
Score = 28.9 bits (63), Expect = 6.0
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 165 GVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLG--GALGV 222
GV +PG L + +PG G G AAA G ++ G L G LG G +G+
Sbjct: 537 GVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGG-LGALGGVGI 595
Query: 223 PG 224
PG
Sbjct: 596 PG 597
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 184 GVLPGLGPPLGMAAAA-------------AGPGLGGSLGGALAGPLGGALGVPG 224
GV PG+GP G+AAAA A GLG + G LG +GVPG
Sbjct: 495 GVAPGIGPG-GVAAAAKSAAKVAAKAQLRAAAGLGAGIPG-----LGVGVGVPG 542
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 186 LPGLG-----PPLGMAAAA--AGPGLGGSLGGALAGPLGGALGVPG 224
+PG+G PP A AA GLGG LGGA PLGG PG
Sbjct: 657 VPGVGGLGGIPPAAAAKAAKYGAAGLGGVLGGAGQFPLGGVAARPG 702
Score = 33.9 bits (76), Expect = 0.19
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 147 LGNLSVS---IVP-PSKRVEFG---GVWLPGPVPHPLQSTLALEGV--LPGLGPPLGMAA 197
+G L VS +VP P V+ G GV LPG P + GV LPG+ P G
Sbjct: 118 VGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV--PTGAGV 175
Query: 198 AAAGPGLGGSLGGAL-AGPLGGAL-GVP 223
PG+GG+ G GP GG GVP
Sbjct: 176 KPKAPGVGGAFAGIPGVGPFGGPQPGVP 203
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 164 GGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA-------GPGLGGSLGGALAGPL 216
GG +PG VP + G + G+G P AAAAA G G GG GP
Sbjct: 278 GGAGVPG-VPGAIPGI----GGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGP- 331
Query: 217 GGALGVPGA 225
G +GVPGA
Sbjct: 332 -GVVGVPGA 339
Score = 29.3 bits (64), Expect = 4.6
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVP----HPLQSTLALEG--VLPGLGPPLGMAAAAAGPG 203
L +SI+ PS+ G +PG VP +P AL G + PG P + AG G
Sbjct: 16 LLLSILHPSRPGGVPGA-IPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAG 74
Query: 204 LGGSLGGALAGPLGGALGVPG 224
LG LG A GAL VPG
Sbjct: 75 LGAGLGAFPAVTFPGAL-VPG 94
Score = 28.9 bits (63), Expect = 6.0
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 165 GVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLG--GALGV 222
GV +PG L + +PG G G AAA G ++ G L G LG G +G+
Sbjct: 556 GVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGG-LGALGGVGI 614
Query: 223 PG 224
PG
Sbjct: 615 PG 616
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 184 GVLPGLGPPLGMAAAA-------------AGPGLGGSLGGALAGPLGGALGVPG 224
GV PG+GP G+AAAA A GLG + G LG +GVPG
Sbjct: 514 GVAPGIGPG-GVAAAAKSAAKVAAKAQLRAAAGLGAGIPG-----LGVGVGVPG 561
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 34.7 bits (78), Expect = 0.11
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 186 LPGLGPPLGMAAAAAGPGLGGS----LGGALAGPLGGALGVPGAKE 227
+PG P G AA GLGG+ GG +AGP GA +PGA++
Sbjct: 175 VPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGP-AGATAIPGARK 219
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 156 PPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGG----- 210
P R + G LPGP L G PGL PLG PG+ GS G
Sbjct: 447 PVGPRGDPGAPGLPGPPGKGKDGEPGLRGS-PGLPGPLGTKGDRGAPGIPGSPGSRGDPG 505
Query: 211 -ALAGPLGGALGVPGAKES 228
+AGP G + G PG K S
Sbjct: 506 IGVAGPPGPS-GPPGDKGS 523
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 33.9 bits (76), Expect = 0.19
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 147 LGNLSVS---IVP-PSKRVEFG---GVWLPGPVPHPLQSTLALEGV--LPGLGPPLGMAA 197
+G L VS +VP P V+ G GV LPG P + GV LPG+ P G
Sbjct: 108 VGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV--PTGAGV 165
Query: 198 AAAGPGLGGSLGGAL-AGPLGGAL-GVP 223
PG+GG+ G GP GG GVP
Sbjct: 166 KPKAPGVGGAFAGIPGVGPFGGPQPGVP 193
Score = 32.7 bits (73), Expect = 0.42
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLG 209
L +SI+ PS+ GGV PG +P + + + PG P + AG GLG LG
Sbjct: 16 LLLSILHPSRP---GGV--PGAIPGGVPGGVFYPALGPGGKPLKPVPGGLAGAGLGAGLG 70
Query: 210 GALAGPLGGALGVPG 224
A GAL VPG
Sbjct: 71 AFPAVTFPGAL-VPG 84
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 164 GGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA-------GPGLGGSLGGALAGPL 216
GG +PG VP + G + G+G P AAAAA G G GG GP
Sbjct: 268 GGAGVPG-VPGAIPGI----GGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGP- 321
Query: 217 GGALGVPGA 225
G +GVPGA
Sbjct: 322 -GVVGVPGA 329
Score = 28.9 bits (63), Expect = 6.0
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 165 GVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLG--GALGV 222
GV +PG L + +PG G G AAA G ++ G L G LG G +G+
Sbjct: 527 GVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGG-LGALGGVGI 585
Query: 223 PG 224
PG
Sbjct: 586 PG 587
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 184 GVLPGLGPPLGMAAAA-------------AGPGLGGSLGGALAGPLGGALGVPG 224
GV PG+GP G+AAAA A GLG + G LG +GVPG
Sbjct: 485 GVAPGIGPG-GVAAAAKSAAKVAAKAQLRAAAGLGAGIPG-----LGVGVGVPG 532
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 154 IVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALA 213
I PP ++ E G LPGP P Q E +PG P+G PG G G A
Sbjct: 1333 IGPPGEQGEKGDRGLPGPQGSPGQKG---EMGIPGASGPIGPGGPPGLPGPAGPKGAKGA 1389
Query: 214 GPLGGALGVPGAK 226
GG G G +
Sbjct: 1390 TGPGGPKGEKGVQ 1402
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGP--PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAK 226
PGP+ P + L+G LGP P G PG G G A A G G PG K
Sbjct: 412 PGPLGQP--GSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 469
Query: 227 ESRAFN 232
R F+
Sbjct: 470 GDRGFD 475
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 192 PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPG 224
PLG A PG G GG A GA+G PG
Sbjct: 1230 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 154 IVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALA 213
I PP ++ E G LPGP P Q E +PG P+G PG G G A
Sbjct: 1312 IGPPGEQGEKGDRGLPGPQGSPGQKG---EMGIPGASGPIGPGGPPGLPGPAGPKGAKGA 1368
Query: 214 GPLGGALGVPGAK 226
GG G G +
Sbjct: 1369 TGPGGPKGEKGVQ 1381
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGP--PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAK 226
PGP+ P + L+G LGP P G PG G G A A G G PG K
Sbjct: 391 PGPLGQP--GSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 448
Query: 227 ESRAFN 232
R F+
Sbjct: 449 GDRGFD 454
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 192 PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPG 224
PLG A PG G GG A GA+G PG
Sbjct: 1209 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 154 IVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALA 213
I PP ++ E G LPGP P Q E +PG P+G PG G G A
Sbjct: 1419 IGPPGEQGEKGDRGLPGPQGSPGQKG---EMGIPGASGPIGPGGPPGLPGPAGPKGAKGA 1475
Query: 214 GPLGGALGVPGAK 226
GG G G +
Sbjct: 1476 TGPGGPKGEKGVQ 1488
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGP--PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAK 226
PGP+ P + L+G LGP P G PG G G A A G G PG K
Sbjct: 498 PGPLGQP--GSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVK 555
Query: 227 ESRAFN 232
R F+
Sbjct: 556 GDRGFD 561
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 192 PLGMAAAAAGPGLGGSLGGALAGPLGGALGVPG 224
PLG A PG G GG A GA+G PG
Sbjct: 1316 PLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 33.1 bits (74), Expect = 0.32
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 147 LGNLSVSIVP---------PSKRVEFG---GVWLPGPVPHPLQSTLALEGV--LPGLGPP 192
+G L VS P P V+ G GV LPG P + GV LPG+ P
Sbjct: 118 VGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV--P 175
Query: 193 LGMAAAAAGPGLGGSLGGAL-AGPLGGAL-GVP 223
G PG+GG+ G GP GG GVP
Sbjct: 176 TGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVP 208
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 164 GGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA-------GPGLGGSLGGALAGPL 216
GG +PG VP + G + G+G P AAAAA G G GG GP
Sbjct: 283 GGAGVPG-VPGAIPGI----GGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGP- 336
Query: 217 GGALGVPGA 225
G +GVPGA
Sbjct: 337 -GVVGVPGA 344
Score = 29.3 bits (64), Expect = 4.6
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVP----HPLQSTLALEG--VLPGLGPPLGMAAAAAGPG 203
L +SI+ PS+ G +PG VP +P AL G + PG P + AG G
Sbjct: 16 LLLSILHPSRPGGVPGA-IPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAG 74
Query: 204 LGGSLGGALAGPLGGALGVPG 224
LG LG A GAL VPG
Sbjct: 75 LGAGLGAFPAVTFPGAL-VPG 94
Score = 28.9 bits (63), Expect = 6.0
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 165 GVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLG--GALGV 222
GV +PG L + +PG G G AAA G ++ G L G LG G +G+
Sbjct: 561 GVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGG-LGALGGVGI 619
Query: 223 PG 224
PG
Sbjct: 620 PG 621
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 184 GVLPGLGPPLGMAAAA-------------AGPGLGGSLGGALAGPLGGALGVPG 224
GV PG+GP G+AAAA A GLG + G LG +GVPG
Sbjct: 519 GVAPGIGPG-GVAAAAKSAAKVAAKAQLRAAAGLGAGIPG-----LGVGVGVPG 566
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 33.1 bits (74), Expect = 0.32
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 147 LGNLSVSIVP---------PSKRVEFG---GVWLPGPVPHPLQSTLALEGV--LPGLGPP 192
+G L VS P P V+ G GV LPG P + GV LPG+ P
Sbjct: 118 VGGLGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV--P 175
Query: 193 LGMAAAAAGPGLGGSLGGAL-AGPLGGAL-GVP 223
G PG+GG+ G GP GG GVP
Sbjct: 176 TGAGVKPKAPGVGGAFAGIPGVGPFGGPQPGVP 208
Score = 30.8 bits (68), Expect = 1.6
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 164 GGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAA-------GPGLGGSLGGALAGPL 216
GG +PG VP + G + G+G P AAAAA G G GG GP
Sbjct: 283 GGAGVPG-VPGAIPGI----GGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGP- 336
Query: 217 GGALGVPGA 225
G +GVPGA
Sbjct: 337 -GVVGVPGA 344
Score = 29.3 bits (64), Expect = 4.6
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVP----HPLQSTLALEG--VLPGLGPPLGMAAAAAGPG 203
L +SI+ PS+ G +PG VP +P AL G + PG P + AG G
Sbjct: 16 LLLSILHPSRPGGVPGA-IPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAG 74
Query: 204 LGGSLGGALAGPLGGALGVPG 224
LG LG A GAL VPG
Sbjct: 75 LGAGLGAFPAVTFPGAL-VPG 94
Score = 28.9 bits (63), Expect = 6.0
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 165 GVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGALAGPLG--GALGV 222
GV +PG L + +PG G G AAA G ++ G L G LG G +G+
Sbjct: 542 GVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGG-LGALGGVGI 600
Query: 223 PG 224
PG
Sbjct: 601 PG 602
Score = 28.5 bits (62), Expect = 7.9
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 19/54 (35%)
Query: 184 GVLPGLGPPLGMAAAA-------------AGPGLGGSLGGALAGPLGGALGVPG 224
GV PG+GP G+AAAA A GLG + G LG +GVPG
Sbjct: 500 GVAPGIGPG-GVAAAAKSAAKVAAKAQLRAAAGLGAGIPG-----LGVGVGVPG 547
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 33.1 bits (74), Expect = 0.32
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 38 PAAAGAGAPGQQLPEPRSSDGL-GVGRAWSWAWPTNHTGALARAGAAGALPAQRTKRKPS 96
PAA G PG +S G G+ RA+SW AGA GA PA +K
Sbjct: 10 PAAEEPGNPGGPPRRKKSRSGASGLRRAFSWL--RGKRRKKKAAGAEGAEPAAPRAKKAE 67
Query: 97 IKAARAK 103
KA RAK
Sbjct: 68 DKAKRAK 74
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 32.7 bits (73), Expect = 0.42
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 191 PPLGMAAAAAGPGLGG-SLGGALAGPLG-----GALGVPGAKESRAFNCHVEYEKTNRAR 244
PP G GP G S+ G LA P GA+G PGA R F +++ ++ +
Sbjct: 265 PPAGPMHPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQ 324
Query: 245 KHRPCLYDPS 254
H P PS
Sbjct: 325 HHPPGPGQPS 334
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 150 LSVSIVPPSKRVEFGGVWLPGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLG 209
L V I K +E L G P+ ++ V G G G G GLGG LG
Sbjct: 463 LDVEIATYRKLLEGEECRLSGEGVGPVNISVVTSSVSSGYGSGSGYGGGLGG-GLGGGLG 521
Query: 210 GALAGPLGGA 219
G LAG G+
Sbjct: 522 GGLAGGSSGS 531
Score = 29.3 bits (64), Expect = 4.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 188 GLGP---PLGMAAAAAGPGLGGSLGGALAGPLGGALG 221
G+GP + ++ ++G G G GG L G LGG LG
Sbjct: 485 GVGPVNISVVTSSVSSGYGSGSGYGGGLGGGLGGGLG 521
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 32.7 bits (73), Expect = 0.42
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 169 PGPVPHPLQSTLALEGVLPG------LGPPLGMAAAAAGPGLGGSLGGALAGPLGGALGV 222
PGP P P +++ E LPG L PP A AA G L SL LA G G
Sbjct: 97 PGPAPAPAPASVTAE--LPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFFGE 154
Query: 223 PGAKESRAFNCHVEYEKTNRARKHRPCLYD 252
P A TN K RP Y+
Sbjct: 155 PDA---------FPMFTTNNRVKRRPSPYE 175
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 32.7 bits (73), Expect = 0.42
Identities = 36/132 (27%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query: 139 YFRHNSSSLGNLSVSIVPPSKRVEFGGVWLPGPVPHP----------LQSTLALEGVLPG 188
+ H+ S G L V SK + GP P P L LP
Sbjct: 1243 HHHHHGHSHGGLGVLPDGQSKLQALHAQYCQGPGPAPPPYLPPQQPSLPPPPQQPPPLPQ 1302
Query: 189 LG--PPLGMAAAAAGPGLGGSLGGALAGPLGGALGVPGAKESRAFNCHVEYEKTNRARKH 246
LG PP +A GP G + GP LG PG R H ++ R H
Sbjct: 1303 LGSIPPPPASAPPVGPHRHFHAHGPVPGPQHYTLGRPGRAPRRGAGGHPQFAPHGRHPLH 1362
Query: 247 RPC----LYDPS 254
+P LY P+
Sbjct: 1363 QPTSPLPLYSPA 1374
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 32.7 bits (73), Expect = 0.42
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 164 GGVWLPGPVPHPLQSTLALE-GVLPGLGP-PLGMAAAAAGP-GLGGSLGGALAGPLGGA 219
G W G H L ++ G G P PLG+ A AA P G GG L G LA GGA
Sbjct: 125 GAAWAQGSTAHHLGPAMSPSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGA 183
>gi|239752710 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 184
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 156 PPSKRVEFGGVWLPGPVPHPLQ----STLALEGVLPGL-GPPLGMAAAAAGPGLGGSLGG 210
P S+ + P PV P ST+ P G MA AAG +G ++G
Sbjct: 48 PASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGH 107
Query: 211 ALAGPL-GGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQ 265
L + GG G A+ +R + E + T A++ +PC + Q F E ++Q
Sbjct: 108 ILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQ--FLECAENQ 161
>gi|239747238 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 156 PPSKRVEFGGVWLPGPVPHPLQ----STLALEGVLPGL-GPPLGMAAAAAGPGLGGSLGG 210
P S+ + P PV P ST+ P G MA AAG +G ++G
Sbjct: 48 PASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGH 107
Query: 211 ALAGPL-GGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQ 265
L + GG G A+ +R + E + T A++ +PC + Q F E ++Q
Sbjct: 108 ILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQ--FLECAENQ 161
>gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 156 PPSKRVEFGGVWLPGPVPHPLQ----STLALEGVLPGL-GPPLGMAAAAAGPGLGGSLGG 210
P S+ + P PV P ST+ P G MA AAG +G ++G
Sbjct: 48 PASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGH 107
Query: 211 ALAGPL-GGALGVPGAKESRAFNCHVEYEKTNRARKHRPCLYDPSQVCFTEHTQSQ 265
L + GG G A+ +R + E + T A++ +PC + Q F E ++Q
Sbjct: 108 ILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQ--FLECAENQ 161
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.0 bits (71), Expect = 0.71
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 157 PSKRVEFGGVWLPGPV-PHPLQSTLALEGVLPGLGPP--------LGMAAAAAGPGLGGS 207
P + E G V GP P + + L G+ +GPP G AA PG+ G+
Sbjct: 261 PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Query: 208 LGGALAGPLG--GALGVPGAKESR 229
G L GP G G +G GA +R
Sbjct: 321 PG--LPGPRGIPGPVGAAGATGAR 342
Score = 30.4 bits (67), Expect = 2.1
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 169 PGPVPHPLQSTLALEGVLPGLGPPLGMAAAAAGPGLGGSLGGA----LAGPLGGALGVPG 224
PG V P + + G P G A PG G +G A AGP GA G PG
Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP-AGAAGQPG 736
Query: 225 AKESR 229
AK R
Sbjct: 737 AKGER 741
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,198,197
Number of Sequences: 37866
Number of extensions: 789492
Number of successful extensions: 5251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 4505
Number of HSP's gapped (non-prelim): 949
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.