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Search of human proteins with 39752685
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens] 483 e-137
gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens] 362 e-100
gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens] 318 2e-87
gi|5031865 lipoma HMGIC fusion partner [Homo sapiens] 86 4e-17
gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens] 75 6e-14
gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens] 68 6e-12
gi|48717249 transmembrane protein 211 [Homo sapiens] 42 5e-04
gi|5453613 CD7 antigen precursor [Homo sapiens] 32 0.62
gi|68303635 mutS homolog 3 [Homo sapiens] 30 1.8
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 29 3.1
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 29 3.1
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 28 6.9
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 28 6.9
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 28 6.9
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 28 6.9
gi|40217833 G protein-coupled receptor family C, group 5, member... 28 6.9
gi|40217831 G protein-coupled receptor family C, group 5, member... 28 6.9
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 28 9.0
gi|4504573 inhibitor of DNA binding 4, dominant negative helix-l... 28 9.0
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 28 9.0
>gi|39752685 lipoma HMGIC fusion partner-like 3 [Homo sapiens]
Length = 236
Score = 483 bits (1243), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MPGAAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYW 60
MPGAAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYW
Sbjct: 1 MPGAAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYW 60
Query: 61 IGDGVDTPQAGYFGLFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLII 120
IGDGVDTPQAGYFGLFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLII
Sbjct: 61 IGDGVDTPQAGYFGLFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLII 120
Query: 121 ACIICFTLFFFCNTATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYT 180
ACIICFTLFFFCNTATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYT
Sbjct: 121 ACIICFTLFFFCNTATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYT 180
Query: 181 LGACSVRWAYILAIIGILDALILSFLAFVLGNRQDSLMAEELKAENKVLLSQYSLE 236
LGACSVRWAYILAIIGILDALILSFLAFVLGNRQDSLMAEELKAENKVLLSQYSLE
Sbjct: 181 LGACSVRWAYILAIIGILDALILSFLAFVLGNRQDSLMAEELKAENKVLLSQYSLE 236
>gi|38348398 lipoma HMGIC fusion partner-like 4 [Homo sapiens]
Length = 247
Score = 362 bits (929), Expect = e-100
Identities = 168/214 (78%), Positives = 192/214 (89%), Gaps = 1/214 (0%)
Query: 15 MLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFG 74
MLP+QEA+KLYH +Y+RNSRAIGVLWAIFTICFAI+NVV FIQPYW+GD V TP+ GYFG
Sbjct: 1 MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFG 60
Query: 75 LFHYCIGNGFS-RELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCN 133
LFHYC+G+G + RELTCRGSFTDFST+PS AFKAA+FF+ LSM+LI+ CI CF+LFFFCN
Sbjct: 61 LFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCN 120
Query: 134 TATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILA 193
TATVYKICAWMQL +A CLVLGCMIFPDGWD++ ++ MCG KT KY+LG CSVRWAYILA
Sbjct: 121 TATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILA 180
Query: 194 IIGILDALILSFLAFVLGNRQDSLMAEELKAENK 227
IIGIL+ALILSFLAFVLGNRQ L+ EELK ENK
Sbjct: 181 IIGILNALILSFLAFVLGNRQTDLLQEELKPENK 214
>gi|32698930 lipoma HMGIC fusion partner-like 5 [Homo sapiens]
Length = 219
Score = 318 bits (816), Expect = 2e-87
Identities = 143/211 (67%), Positives = 175/211 (82%)
Query: 15 MLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFG 74
+LPAQEAAK+YHTNYVRNSRA+GV+W TICF+++ + FIQPYWIGD V+TPQAGYFG
Sbjct: 4 LLPAQEAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFG 63
Query: 75 LFHYCIGNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNT 134
LF YC+GN S EL C+G DFS++PS AFK A FF+ L M LII IICF+LFF CNT
Sbjct: 64 LFSYCVGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNT 123
Query: 135 ATVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAI 194
ATVYKICAWMQL +A L++GC+++PDGWDS EV+RMCGE+T KYTLG C++RWA++LAI
Sbjct: 124 ATVYKICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAI 183
Query: 195 IGILDALILSFLAFVLGNRQDSLMAEELKAE 225
+ I DALILSFLAFVLG RQD L+ ++ KA+
Sbjct: 184 LSIGDALILSFLAFVLGYRQDKLLPDDYKAD 214
>gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
Length = 200
Score = 85.5 bits (210), Expect = 4e-17
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 37 GVLWAIFTICFAIVNVVCFIQPYWI-GDGVDTPQAGYFGLFHYCIG--NGFSRELTCR-- 91
GV+WA+ + A + V F PYW+ G + P + FG F C + SR++
Sbjct: 9 GVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVS--FGTFRRCSYPVHDESRQMMVMVE 66
Query: 92 --GSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTA-----TVYKICAWM 144
G + F +PS ++ + GL L++ ++ T C + TV ++ +
Sbjct: 67 ECGRYASFQGIPSAEWRICTIVTGLGCGLLL--LVALTALMGCCVSDLISRTVGRVAGGI 124
Query: 145 QLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALIL- 203
Q + GC ++P GWDS+EV++ CG + ++ LG C + WAY G A++L
Sbjct: 125 QFLGGLLIGAGCALYPLGWDSEEVRQTCGYTSGQFDLGKCEIGWAYYCTGAGATAAMLLC 184
Query: 204 SFLAFVLGNRQ 214
++LA G +Q
Sbjct: 185 TWLACFSGKKQ 195
>gi|32698676 lipoma HMGIC fusion partner-like 2 [Homo sapiens]
Length = 228
Score = 74.7 bits (182), Expect = 6e-14
Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 38 VLWAIFTICFAIVNVVCFIQPYWI---------------GDGVDTPQAGYFGLFHYCIGN 82
+LW + +I A ++ F+ W+ G G P G++ CI N
Sbjct: 11 MLWTLLSIVVAFAELIAFMSADWLIGKARSRGGVEPAGPGGGSPEPYHPTLGIYARCIRN 70
Query: 83 G----FSRELTCRGSFTDFSTLPSGAFKAASFF--IGLSMMLIIACIICFTLFF-FCNTA 135
F R+ C F + SG ++A + F +G+ ++ ++A + FT+
Sbjct: 71 PGVQHFQRDTLCGPYAESFGEIASGFWQATAIFLAVGIFILCMVALVSVFTMCVQSIMKK 130
Query: 136 TVYKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAII 195
+++ +C +Q + L+LG +++P GW + CG Y G CS+ WA+ AI
Sbjct: 131 SIFNVCGLLQGIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAIG 190
Query: 196 GILDALILSFLAFVLGNRQDSLMAEELKAENKV 228
G +L+F+ V S AE + +KV
Sbjct: 191 G----TVLTFICAVF-----SAQAEIATSSDKV 214
>gi|30039704 lipoma HMGIC fusion partner-like 1 [Homo sapiens]
Length = 220
Score = 68.2 bits (165), Expect = 6e-12
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 36 IGVLWAIFTICFAIVNVVCFIQPYWI-GDGVDTPQAGYFGLFHYCI----GNGFSRELTC 90
+G LWA ++ A+ + + PYW+ G + P + F F C G G S +
Sbjct: 8 VGTLWAFLSLVTAVTSSTSYFLPYWLFGSQMGKPVS--FSTFRRCNYPVRGEGHSLIMVE 65
Query: 91 R-GSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCN---TATVYKICAWMQL 146
G + F+ +PS A++ + G L++ + L + + + Q
Sbjct: 66 ECGRYASFNAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQF 125
Query: 147 TSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALIL 203
+ GC ++P GW+S E+ + CG ++++ LG C + WAY A G A+++
Sbjct: 126 VGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLI 182
>gi|48717249 transmembrane protein 211 [Homo sapiens]
Length = 129
Score = 42.0 bits (97), Expect = 5e-04
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 144 MQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGILDALIL 203
+Q +A +++G +IFP G S +K +C E + Y G C + W Y+ AI+ + A +L
Sbjct: 38 VQAVAATAMIVGLLIFPIGLASPFIKEVC-EASSMYYGGKCRLGWGYMTAILNAVLASLL 96
Query: 204 SFLAF 208
+++
Sbjct: 97 PIISW 101
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 98 STLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTATVYKICAWMQLTSAACLV 153
S LP+ A SF +GL L +AC++ T + K+C+W SAAC+V
Sbjct: 177 SALPA-ALAVISFLLGLG--LGVACVLART--------QIKKLCSWRDKNSAACVV 221
>gi|68303635 mutS homolog 3 [Homo sapiens]
Length = 1137
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 2 PGAAAAAAAAAAAMLPAQEA 21
PGAAAAAAAAAAA PA A
Sbjct: 49 PGAAAAAAAAAAAAPPAPPA 68
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 29.3 bits (64), Expect = 3.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 2 PGAAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTIC---FAIVNVV 53
P AAAA A A + ++L + + +G++ +FT+C F + NVV
Sbjct: 292 PAAAAATAPLANGRAGKRRPSRLVALREQKALKTLGIIMGVFTLCWLPFFLANVV 346
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 29.3 bits (64), Expect = 3.1
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 2 PGAAAAAAAAAAAMLPAQEAAKLYHTN 28
P AAAAAAAAAAA A AA Y +
Sbjct: 223 PAAAAAAAAAAAAAAAAAAAAAYYQVS 249
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 28.1 bits (61), Expect = 6.9
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 4 AAAAAAAAAAAMLPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGD 63
AAAAAAA AAA A +AAK+ +V+++ A + AI T
Sbjct: 571 AAAAAAAYAAATSSAAQAAKV-AAKFVKDAPATKMA-AIAT------------------- 609
Query: 64 GVDTPQAGYFGLFHYCIGNGFSR---ELTCRGSFTDFSTLPSGAFKAAS 109
DT AG G+F +G G SR E G ++ + S ++ AAS
Sbjct: 610 --DTAAAGPLGVFADVLGAGPSRGATESQILGDDSEIYEILSPSYSAAS 656
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 1 MPGAAAAAAAAAAAMLPAQEA 21
+P AAA AAAAA A + AQEA
Sbjct: 275 LPPAAAVAAAAATAKITAQEA 295
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 1 MPGAAAAAAAAAAAMLPAQEA 21
+P AAA AAAAA A + AQEA
Sbjct: 301 LPPAAAVAAAAATAKITAQEA 321
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 1 MPGAAAAAAAAAAAMLPAQEA 21
+P AAA AAAAA A + AQEA
Sbjct: 318 LPPAAAVAAAAATAKITAQEA 338
>gi|40217833 G protein-coupled receptor family C, group 5, member C
isoform b [Homo sapiens]
Length = 453
Score = 28.1 bits (61), Expect = 6.9
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 151 CLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGAC--SVRWAYILAIIG--------ILDA 200
CL L +FP W V C + + C S W +L + +L
Sbjct: 22 CLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTI 81
Query: 201 LILSFLAFVLGNRQDSLMAEEL 222
++++ L FV ++ SL+ ++
Sbjct: 82 ILVASLPFVQDTKKRSLLGTQV 103
>gi|40217831 G protein-coupled receptor family C, group 5, member C
isoform a [Homo sapiens]
Length = 486
Score = 28.1 bits (61), Expect = 6.9
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 151 CLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGAC--SVRWAYILAIIG--------ILDA 200
CL L +FP W V C + + C S W +L + +L
Sbjct: 55 CLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTI 114
Query: 201 LILSFLAFVLGNRQDSLMAEEL 222
++++ L FV ++ SL+ ++
Sbjct: 115 ILVASLPFVQDTKKRSLLGTQV 136
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 216 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 247
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 216 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 247
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 118 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 149
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 216 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 247
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 216 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 247
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 27.7 bits (60), Expect = 9.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 18 AQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFI 56
AQEA KLY+ + +R+ + IGV C ++ N F+
Sbjct: 216 AQEAVKLYNNHEIRSGKHIGV-------CISVANNRLFV 247
>gi|4504573 inhibitor of DNA binding 4, dominant negative
helix-loop-helix protein [Homo sapiens]
Length = 161
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 3 GAAAAAAAAAAAMLPAQEAA 22
G+AAAAAAAAAA A EAA
Sbjct: 37 GSAAAAAAAAAARCKAAEAA 56
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 27.7 bits (60), Expect = 9.0
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 16 LPAQEAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFGL 75
LP +A N ++N I +++ +F FA++ V F G
Sbjct: 1265 LPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFK-----------------GK 1307
Query: 76 FHYCIGNGFSRELTCRGSFTDF 97
F YC E CRG + D+
Sbjct: 1308 FFYCTDESKELERDCRGQYLDY 1329
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.140 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,398,262
Number of Sequences: 37866
Number of extensions: 347179
Number of successful extensions: 2469
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2410
Number of HSP's gapped (non-prelim): 49
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.