Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LHFPL2 Sequence: fasta or formatted (228aa) NCBI GI: 32698676
Description:

lipoma HMGIC fusion partner-like 2

Referenced in:

Adipose Tissue

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         24           1
 C cysteine            5.3         12           1
 D aspartate           2.2          5           1
 E glutamate           4.4         10           2
 F phenylalanine       5.7         13           1
 G glycine            11.0         25           3
 H histidine           1.8          4           1
 I isoleucine          9.2         21           1
 K lysine              3.1          7           2
 L leucine             9.6         22           2
 M methionine          2.6          6           1
 N asparagine          1.3          3           1
 P proline             3.9          9           1
 Q glutamine           3.5          8           1
 R arginine            2.6          6           1
 S serine              6.6         15           2
 T threonine           4.4         10           1
 V valine              6.6         15           2
 W tryptophan          2.2          5           1
 Y tyrosine            3.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipoma HMGIC fusion partner-like 2 
LHFP                  0.159   lipoma HMGIC fusion partner 
LHFPL1                0.143   lipoma HMGIC fusion partner-like 1 
LHFPL4                0.128   lipoma HMGIC fusion partner-like 4 
LHFPL3                0.112   lipoma HMGIC fusion partner-like 3 
LHFPL5                0.092   lipoma HMGIC fusion partner-like 5 
TMEM211               0.038   transmembrane protein 211 
CACNG8                0.022   voltage-dependent calcium channel gamma-8 subunit [H...
TPRG1                 0.016   tumor protein p63 regulated 1 
LOC100131199          0.011   PREDICTED: hypothetical protein 
LOC100131199          0.011   PREDICTED: hypothetical protein 
LOC100131199          0.011   PREDICTED: hypothetical protein 
AMAC1L3               0.011   acyl-malonyl condensing enzyme 1-like 3 
OR13A1                0.011   olfactory receptor, family 13, subfamily A, member ...
AMAC1L1               0.009   PREDICTED: acyl-malonyl condensing enzyme 1-like 1 ...
AMAC1L1               0.009   PREDICTED: acyl-malonyl condensing enzyme 1-like 1 [...
CLEC1B                0.009   C-type lectin domain family 1, member B isoform a [...
NPB                   0.007   preproneuropeptide B 
LOC100131199          0.007   PREDICTED: hypothetical protein 
NPHS2                 0.007   podocin 
AMAC1L2               0.007   acyl-malonyl condensing enzyme 
SLC16A10              0.007   solute carrier family 16, member 10 
MRPL37                0.007   mitochondrial ribosomal protein L37 
LOC100294368          0.007   PREDICTED: hypothetical protein 
SLC44A4               0.007   choline transporter-like protein 4 
CACNG4                0.007   voltage-dependent calcium channel gamma-4 subunit [Ho...
PTCHD2                0.007   patched domain containing 2 
TMBIM1                0.007   transmembrane BAX inhibitor motif containing 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press