Guide to the Human Genome
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Name: LHFPL4 Sequence: fasta or formatted (247aa) NCBI GI: 38348398
Description:

lipoma HMGIC fusion partner-like 4

Referenced in:

Adipose Tissue

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         20           3
 C cysteine            4.9         12           1
 D aspartate           3.6          9           1
 E glutamate           2.8          7           2
 F phenylalanine       7.3         18           3
 G glycine             8.9         22           2
 H histidine           1.6          4           1
 I isoleucine          6.9         17           2
 K lysine              3.2          8           1
 L leucine            11.3         28           2
 M methionine          2.4          6           1
 N asparagine          2.4          6           1
 P proline             4.5         11           1
 Q glutamine           2.4          6           1
 R arginine            3.2          8           1
 S serine              8.1         20           2
 T threonine           4.9         12           1
 V valine              7.7         19           3
 W tryptophan          2.4          6           1
 Y tyrosine            3.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipoma HMGIC fusion partner-like 4 
LHFPL3                0.691   lipoma HMGIC fusion partner-like 3 
LHFPL5                0.553   lipoma HMGIC fusion partner-like 5 
LHFP                  0.131   lipoma HMGIC fusion partner 
LHFPL2                0.117   lipoma HMGIC fusion partner-like 2 
LHFPL1                0.100   lipoma HMGIC fusion partner-like 1 
TMEM211               0.039   transmembrane protein 211 
PMP22                 0.016   peripheral myelin protein 22 
PMP22                 0.016   peripheral myelin protein 22 
PMP22                 0.016   peripheral myelin protein 22 
EMP2                  0.010   epithelial membrane protein 2 
KAT2B                 0.010   K(lysine) acetyltransferase 2B 
DUOXA2                0.008   dual oxidase activator 2 
C1orf95               0.006   hypothetical protein LOC375057 
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.006   synaptotagmin binding, cytoplasmic RNA interacting ...
LMTK3                 0.006   lemur tyrosine kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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