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Search of human proteins with 39725634
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39725634 la related protein isoform 1 [Homo sapiens]
(1019 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39725634 la related protein isoform 1 [Homo sapiens] 2111 0.0
gi|61102725 la related protein isoform 2 [Homo sapiens] 1973 0.0
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 1038 0.0
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 514 e-145
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 293 7e-79
gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 9e-21
gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 9e-21
gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 9e-21
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 74 9e-13
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 74 9e-13
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 74 9e-13
gi|10835067 autoantigen La [Homo sapiens] 67 1e-10
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 58 4e-08
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 58 4e-08
gi|57634536 La ribonucleoprotein domain family, member 4B [Homo ... 55 3e-07
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 54 1e-06
gi|117190342 PHD finger protein 2 [Homo sapiens] 47 1e-04
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 46 2e-04
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 44 8e-04
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 44 8e-04
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 43 0.002
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 43 0.002
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 43 0.002
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 43 0.002
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 43 0.002
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 42 0.002
gi|15055539 ribosomal protein S2 [Homo sapiens] 42 0.003
gi|110681708 zinc finger protein 579 [Homo sapiens] 42 0.003
gi|110349719 titin isoform N2-A [Homo sapiens] 41 0.005
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.005
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 2111 bits (5469), Expect = 0.0
Identities = 1019/1019 (100%), Positives = 1019/1019 (100%)
Query: 1 MLWRVLLSKRPPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFP 60
MLWRVLLSKRPPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFP
Sbjct: 1 MLWRVLLSKRPPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFP 60
Query: 61 VLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPT 120
VLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPT
Sbjct: 61 VLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPT 120
Query: 121 RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI 180
RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI
Sbjct: 121 RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI 180
Query: 181 DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH 240
DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH
Sbjct: 181 DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH 240
Query: 241 DQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP 300
DQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP
Sbjct: 241 DQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP 300
Query: 301 KYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLP 360
KYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLP
Sbjct: 301 KYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLP 360
Query: 361 ITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFS 420
ITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFS
Sbjct: 361 ITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFS 420
Query: 421 QLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENW 480
QLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENW
Sbjct: 421 QLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENW 480
Query: 481 IEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMD 540
IEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMD
Sbjct: 481 IEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMD 540
Query: 541 GRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAK 600
GRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAK
Sbjct: 541 GRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAK 600
Query: 601 VINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPP 660
VINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPP
Sbjct: 601 VINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPP 660
Query: 661 GPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQT 720
GPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQT
Sbjct: 661 GPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQT 720
Query: 721 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTP 780
SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTP
Sbjct: 721 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTP 780
Query: 781 TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFR 840
TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFR
Sbjct: 781 TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFR 840
Query: 841 FWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEE 900
FWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEE
Sbjct: 841 FWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEE 900
Query: 901 TVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHK 960
TVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHK
Sbjct: 901 TVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHK 960
Query: 961 RHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK 1019
RHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK
Sbjct: 961 RHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK 1019
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 1973 bits (5112), Expect = 0.0
Identities = 960/986 (97%), Positives = 964/986 (97%), Gaps = 1/986 (0%)
Query: 34 GRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDF 93
GR++ V A P+ P P + S PEHSAPAKVVRAAVPKQRKGSKVGDF
Sbjct: 112 GRRDFVE-APPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDF 170
Query: 94 GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE 153
GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE
Sbjct: 171 GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE 230
Query: 154 EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG 213
EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG
Sbjct: 231 EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG 290
Query: 214 SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR 273
SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR
Sbjct: 291 SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR 350
Query: 274 GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ 333
GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ
Sbjct: 351 GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ 410
Query: 334 IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV 393
IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV
Sbjct: 411 IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV 470
Query: 394 DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT 453
DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT
Sbjct: 471 DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT 530
Query: 454 KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP 513
KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP
Sbjct: 531 KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP 590
Query: 514 SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP 573
SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP
Sbjct: 591 SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP 650
Query: 574 HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK 633
HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK
Sbjct: 651 HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK 710
Query: 634 KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT 693
KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT
Sbjct: 711 KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT 770
Query: 694 VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES 753
VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES
Sbjct: 771 VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES 830
Query: 754 HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY 813
HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY
Sbjct: 831 HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY 890
Query: 814 HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG 873
HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG
Sbjct: 891 HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG 950
Query: 874 LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK 933
LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK
Sbjct: 951 LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK 1010
Query: 934 LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP 993
LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP
Sbjct: 1011 LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP 1070
Query: 994 TPPTGQPVREDAKWTSQHSNTQTLGK 1019
TPPTGQPVREDAKWTSQHSNTQTLGK
Sbjct: 1071 TPPTGQPVREDAKWTSQHSNTQTLGK 1096
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 1038 bits (2683), Expect = 0.0
Identities = 545/938 (58%), Positives = 672/938 (71%), Gaps = 52/938 (5%)
Query: 98 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 156
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 157 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 216
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 217 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 276
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 277 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 335
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 336 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 395
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 396 KVRRREEPEKWPLP--PIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPV-P 452
K+R++ EPEKWP+P P TDFSQL++CPEFVP Q + TESAP SPR +P+ P
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSP 344
Query: 453 TKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQL 512
K E S L+ + +GLS SLPDLDSE WIEVKKR +P+P + ++S S+P+
Sbjct: 345 KKNSETSILQAMSRGLSTSLPDLDSEPWIEVKKRHQPAPVKLRES--------VSVPEG- 395
Query: 513 PSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQT 572
QL S ++ EQEELDFLFDEE+EQ+ GRKNTFT WSD +SDYEIDD+D+NKILIVTQT
Sbjct: 396 SLNQLCSSEEPEQEELDFLFDEEIEQI-GRKNTFTDWSDNDSDYEIDDQDLNKILIVTQT 454
Query: 573 PHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENF 632
P Y+++HPGGDRTG H SRAK+++ELAKVINDGL+YYEQDLW E+ E +++ IKQEVENF
Sbjct: 455 PPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEEDENKHTAIKQEVENF 514
Query: 633 KKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQ--------VP----TDALANKLFGA 680
KK+N+IS+EQF+ LTPE P +PNQEVP P + +Q +P TD LA KLF
Sbjct: 515 KKLNLISKEQFENLTPELPFEPNQEVPVAPSQSRQGGVQGVLHIPKKDLTDELAQKLFDV 574
Query: 681 PEPSTIA--RSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMP 738
E ++ A SLPT VPESP TRTP+TPRTP+L+D ++T RFYPVVKE + +D K P
Sbjct: 575 SEITSAAMVHSLPTAVPESPRIHPTRTPKTPRTPRLQDPNKTPRFYPVVKEPKAIDVKSP 634
Query: 739 RKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSS---PSEGTPTVGSYGCTPQSLPKF 795
RKRKTRHS+NPPLE HVGWVMDSR+ P T+S+S+S PSEG P GSYGCTP S PKF
Sbjct: 635 RKRKTRHSTNPPLECHVGWVMDSRDRGPGTSSVSTSNASPSEGAPLAGSYGCTPHSFPKF 694
Query: 796 QHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY 855
QHPSHELLKENGFTQ VYHKYRRRCL+ERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY
Sbjct: 695 QHPSHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY 754
Query: 856 EEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEK 915
EEF+QLA EDAKE YRYGLECLFR+YSYGLEKKFR +IF+DFQEET KDYE+GQLYGLEK
Sbjct: 755 EEFRQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEK 814
Query: 916 FWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRK 975
FWA+LKYS++K IDPKLQEYL F+RLEDFRVDPP+ +E KRHS + G R
Sbjct: 815 FWAYLKYSQSKTQSIDPKLQEYLCSFKRLEDFRVDPPISDEFGRKRHS--STSGEESNRH 872
Query: 976 RCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSN 1013
R P SS++P T P+ + S S+
Sbjct: 873 RLPPNSSTKPPNAAKPTSTSELQVPINSPRRNISPESS 910
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 514 bits (1323), Expect = e-145
Identities = 280/534 (52%), Positives = 367/534 (68%), Gaps = 33/534 (6%)
Query: 98 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 156
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 157 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 216
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 217 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 276
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 277 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 335
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 336 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 395
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 396 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPV-P 452
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + TESAP SPR +P+ P
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSP 344
Query: 453 TKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQL 512
K E S L+ + +GLS SLPDLDSE WIEVKKR +P+P + ++S S+P+
Sbjct: 345 KKNSETSILQAMSRGLSTSLPDLDSEPWIEVKKRHQPAPVKLRES--------VSVPEG- 395
Query: 513 PSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQT 572
QL S ++ EQEELDFLFDEE+EQ+ GRKNTFT WSD +SDYEIDD+D+NKILIVTQT
Sbjct: 396 SLNQLCSSEEPEQEELDFLFDEEIEQI-GRKNTFTDWSDNDSDYEIDDQDLNKILIVTQT 454
Query: 573 PHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIK 626
P Y+++HPGGDRTG H SRAK+++ELAKVINDGL+YYEQDLW E+ E +++ IK
Sbjct: 455 PPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEEDENKHTAIK 508
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 293 bits (749), Expect = 7e-79
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 22/345 (6%)
Query: 98 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 156
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 157 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 216
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 217 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 276
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 277 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 335
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 336 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 395
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 396 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKET 438
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + T
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
>gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 9e-21
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 287 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 346
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 347 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 402
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 41.6 bits (96), Expect = 0.004
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 29 PGRLPGRKNSVALAAAP---RKEPTGDREKPLPFPVLAPFSNPEHSAPA----------- 74
P L S+ AA P + G +EK P P+L P NP + P+
Sbjct: 67 PSSLVVPTRSMPQAAVPDTMEEAAAGPKEKRQP-PLLLPKGNPWNKKPSQHLSPTTTGRP 125
Query: 75 --------------KVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKP 117
K+++A K++K +K DF D NW TP E+ ++SV Q +K
Sbjct: 126 QPALETLEAEFGSLKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKK 185
Query: 118 QPTRKLPPKKDM 129
RK ++++
Sbjct: 186 PQDRKEKRREEL 197
>gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 9e-21
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 287 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 346
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 347 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 402
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 41.6 bits (96), Expect = 0.004
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 29 PGRLPGRKNSVALAAAP---RKEPTGDREKPLPFPVLAPFSNPEHSAPA----------- 74
P L S+ AA P + G +EK P P+L P NP + P+
Sbjct: 67 PSSLVVPTRSMPQAAVPDTMEEAAAGPKEKRQP-PLLLPKGNPWNKKPSQHLSPTTTGRP 125
Query: 75 --------------KVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKP 117
K+++A K++K +K DF D NW TP E+ ++SV Q +K
Sbjct: 126 QPALETLEAEFGSLKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKK 185
Query: 118 QPTRKLPPKKDM 129
RK ++++
Sbjct: 186 PQDRKEKRREEL 197
>gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 9e-21
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 287 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 346
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 347 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 402
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 41.2 bits (95), Expect = 0.005
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 29/119 (24%)
Query: 39 VALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPA------------------------ 74
VA+ + G +EK P P+L P NP + P+
Sbjct: 80 VAVPDTMEEAAAGPKEKRQP-PLLLPKGNPWNKKPSQHLSPTTTGRPQPALETLEAEFGS 138
Query: 75 -KVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKPQPTRKLPPKKDM 129
K+++A K++K +K DF D NW TP E+ ++SV Q +K RK ++++
Sbjct: 139 LKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKKPQDRKEKRREEL 197
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 73.6 bits (179), Expect = 9e-13
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 305 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 364
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
Query: 365 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 413
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
Query: 414 YSQTDFSQLLNCPEFV 429
+++ NCP+ +
Sbjct: 218 LFKSE-----NCPKVI 228
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 73.6 bits (179), Expect = 9e-13
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 305 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 364
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
Query: 365 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 413
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
Query: 414 YSQTDFSQLLNCPEFV 429
+++ NCP+ +
Sbjct: 218 LFKSE-----NCPKVI 228
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 73.6 bits (179), Expect = 9e-13
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 305 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 364
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 104 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 163
Query: 365 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 413
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 164 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 223
Query: 414 YSQTDFSQLLNCPEFV 429
+++ NCP+ +
Sbjct: 224 LFKSE-----NCPKVI 234
>gi|10835067 autoantigen La [Homo sapiens]
Length = 408
Score = 66.6 bits (161), Expect = 1e-10
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 326 LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPITLIASFHRVQALTTDISLIFAAL 384
L+ I QIEYYF NL RD FL+ ++ D G++P+ ++ F+R+ LTTD ++I AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 385 KDSK--VVEIVDEKVRRREEPEKWPLPPIVDYSQTD 418
SK ++EI ++K + R P K PLP + D + D
Sbjct: 73 SKSKAELMEISEDKTKIRRSPSK-PLPEVTDEYKND 107
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 323 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLI 380
+++L D I +Q++++F NL +D FLR +++ DG++ I+L+ SF++++ LTTD LI
Sbjct: 32 KQVLAD-IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLI 90
Query: 381 FAALKDSKVVEIVDEKVR-RREEP 403
AL+ S VVE+ E R RR++P
Sbjct: 91 ARALRSSAVVELDLEGTRIRRKKP 114
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 323 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLI 380
+++L D I +Q++++F NL +D FLR +++ DG++ I+L+ SF++++ LTTD LI
Sbjct: 32 KQVLAD-IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLI 90
Query: 381 FAALKDSKVVEIVDEKVR-RREEP 403
AL+ S VVE+ E R RR++P
Sbjct: 91 ARALRSSAVVELDLEGTRIRRKKP 114
>gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
Length = 738
Score = 55.1 bits (131), Expect = 3e-07
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 323 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFA 382
QE ++ +K+ +E+ S +NL D +L +MD+D ++PIT +A+ ++ L+TD+ LI
Sbjct: 153 QEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVE 212
Query: 383 ALKDSKVVEIVDEK 396
L+ +V+ VDEK
Sbjct: 213 VLRSLPLVQ-VDEK 225
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 53.5 bits (127), Expect = 1e-06
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 322 DQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDAD--GFLPITLIASFHRVQALTTDISL 379
D+EL+K + QIE+YFS +NLE+D FL + + + G++ + L+ SF +V+ LT D
Sbjct: 89 DEELIKKLVD-QIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 380 IFAALKDSKVVEIVDE--KVRR 399
ALK S V+E+ ++ KVRR
Sbjct: 148 TAHALKYSVVLELNEDHRKVRR 169
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 46.6 bits (109), Expect = 1e-04
Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 57/254 (22%)
Query: 556 YEIDDRDVNKILIVTQTPH------YMRRHPGGDRTGNHTSRAKMSAEL---AKVIN--- 603
YE++ R K+ +TQ P+ YM +H G+H S ++ L AK++N
Sbjct: 349 YEVERR--LKLGSLTQFPNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAF 406
Query: 604 ------DGLFYYEQDLWAEKFEPEY--SQIKQEVENFKKVNMISREQFDTLTPEPPV--- 652
L +E +L E F+P + +E+ + + R + +T+ V
Sbjct: 407 RSWTKKQALAEHEDEL-PEHFKPSQLIKDLAKEIRLSENASKAVRPEVNTVASSDEVCDG 465
Query: 653 DPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTP 712
D +E PP P + P +L K+ P T+ P+ +P+ P + + PR P+T
Sbjct: 466 DREKEEPPSP--IEATPPQSLLEKVSKKKTPKTVKMPKPSKIPKPP--KPPKPPRPPKTL 521
Query: 713 QLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPP------LESHVGWVMDSREHRP 766
+LKD + K+G +K+R S++P LE+H + E
Sbjct: 522 KLKDGGK--------KKG----------KKSRESASPTIPNLDLLEAHTKEALTKMEPPK 563
Query: 767 R---TASISSSPSE 777
+ T S+ S P++
Sbjct: 564 KGKATKSVLSVPNK 577
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 46.2 bits (108), Expect = 2e-04
Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 47/270 (17%)
Query: 56 PLPFPVLAPFSN-PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPG--EIAHKSVQP 112
P P P LA + PE+ AP + + P + G + + WP PG E+A P
Sbjct: 829 PPPPPYLASYPGFPENGAPGPPI-SRFPLEEPGPR------PLPWP-PGSDEVAKIQTPP 880
Query: 113 QSHKP--QPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKG 170
+P + T +L + ++ +G GS + P + + E + G R G ++G
Sbjct: 881 PKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGP----RPGSSRRG 936
Query: 171 N---------------KHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSE 215
K P +++ P P E+ P +PP+P + +G++ G +
Sbjct: 937 IPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETP-KPPKPDPLKITKGKLGGPK 995
Query: 216 SATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRG-----RGRG 270
P +PA P ++ + ++ TS G R + RGRG GRG
Sbjct: 996 ETP--PNGNLSPA--PRLRRDYSYERVGPTSC-----RGRGRGEYFARGRGFRGTYGGRG 1046
Query: 271 RGRGRGGTRTHFDYQFGYRKFDGVEGPRTP 300
RG R++ +++ + G GP P
Sbjct: 1047 RGARSREFRSYREFRGDDGRGGGTGGPNHP 1076
Score = 41.6 bits (96), Expect = 0.004
Identities = 52/219 (23%), Positives = 80/219 (36%), Gaps = 32/219 (14%)
Query: 19 DFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAKVV- 77
D Q A P G+K + +P EP P P A S P + P
Sbjct: 360 DSQSASGEERPPEADGKKGN-----SPNSEP------PTPKTAWAETSRPPETEPGPPAP 408
Query: 78 RAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEG 137
+ +P +G A NW PG+ + P P P + + ++Q E
Sbjct: 409 KPPLPPPHRGP-------AGNWGPPGDYPDRG-GPPCKPPAPEDEDEAWRQRRKQSSSEI 460
Query: 138 SDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTR 197
S + E + + +E EE+ E+ + +K ++D K P ++L + P
Sbjct: 461 SLAVERARRRREE--EERRMQEERRAACAEKLK--------RLDEKFGAPDKRLKAEPAA 510
Query: 198 PPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPE 236
PP PA + A P PP A PE +PE
Sbjct: 511 PPAAPSTPAPPPAVPKELPAP--PAPPPASAPTPETEPE 547
Score = 31.2 bits (69), Expect = 5.2
Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 23/181 (12%)
Query: 646 LTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPE----SPNYR 701
L EP P P PP A+ +L P P + P T PE +P +
Sbjct: 504 LKAEPAAPPAAPSTPAPP-------PAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQ 556
Query: 702 NTRTPRTPRTPQL-KDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD 760
+T TP P L TS E ++ ++P K PP E
Sbjct: 557 STPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSK----EGPEPPEEVPPPTTPP 612
Query: 761 SREHRPRTASISSSPSEGTPTVG-SYGCTPQSL-PKFQHPSHE-LLKENGFTQHVYHKYR 817
+ P+ I P+ P+ G Y +SL P+FQ E LLK+ QH + +++
Sbjct: 613 VPKVEPKGDGI--GPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQ--QQHQWQQHQ 668
Query: 818 R 818
+
Sbjct: 669 Q 669
Score = 31.2 bits (69), Expect = 5.2
Identities = 56/258 (21%), Positives = 84/258 (32%), Gaps = 77/258 (29%)
Query: 78 RAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEG 137
R +P + G+ G P P ++ +P + + PPK D + KG+
Sbjct: 934 RRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPK--PPKPDPLKITKGKL 991
Query: 138 SDSKESP---------KTKSDESGEEKNGDEDCQ--------------RG--GQKKKGNK 172
KE+P + + D S E+ G C+ RG G + +G +
Sbjct: 992 GGPKETPPNGNLSPAPRLRRDYS-YERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGAR 1050
Query: 173 HKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSE----------------- 215
+ + + + R P PP PR A+ +GSE
Sbjct: 1051 SREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGS 1110
Query: 216 --------------------SATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGG 255
+ T VP+APP P P P PA + GG
Sbjct: 1111 ETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPP--SPAPA----------RFTARGG 1158
Query: 256 ARASFRGRGRGRGRGRGR 273
+ RG RGRG GR
Sbjct: 1159 RVFTPRGVPSRRGRGGGR 1176
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 43.9 bits (102), Expect = 8e-04
Identities = 22/37 (59%), Positives = 22/37 (59%)
Query: 243 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 279
D VKS RGRGRGRGRGRGRGRGG R
Sbjct: 82 DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 43.9 bits (102), Expect = 8e-04
Identities = 22/37 (59%), Positives = 22/37 (59%)
Query: 243 DETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTR 279
D VKS RGRGRGRGRGRGRGRGG R
Sbjct: 82 DVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPR 118
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 56 PLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSK-------VGDFGDAINWPTPGEIAHK 108
P P+ A S +A A V +VPK+R+ K VGD DA P +
Sbjct: 486 PESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVE 545
Query: 109 SVQPQSHKPQPTRK---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGG 165
+ P P P + +PP+ + E E DSKE ++ + E+ Q G
Sbjct: 546 NQPPAGSNPGPESEGSGVPPRPE----EADETWDSKE----------DKIHNAENIQPGE 591
Query: 166 QKKKGNKHKWVPLQIDMKPEVPREKL 191
QK + +W PL ++ K RE L
Sbjct: 592 QKYEYKSDQWKPLNLEEKKRYDREFL 617
Score = 33.1 bits (74), Expect = 1.4
Identities = 57/258 (22%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ Q A I PG LPG ++S + +P+ P P PVL P S P
Sbjct: 232 PDDRSQGAIIADRPG-LPGPEHSPS-----ESQPSSPSPTPSPSPVLEPGSEP------N 279
Query: 76 VVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP--------KK 127
+ ++P G + ++ TP I+ ++ +P P+PT P K
Sbjct: 280 LAVLSIP----GDTMTTIQMSVEESTP--ISRETGEPYRLSPEPTPLAEPILEVEVTLSK 333
Query: 128 DMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP------LQID 181
+ E E +P E NG + + + + P +
Sbjct: 334 PVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVP 393
Query: 182 MKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPT-PAWQPEIKP---EP 237
+ P E+L + PP P + E + E +APPT P+ P P P
Sbjct: 394 IAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKE--VTASMAPPTIPSATPATAPSATSP 451
Query: 238 AWHDQDETSSVKSDGAGG 255
A ++ E + +G G
Sbjct: 452 AQEEEMEEEEEEEEGEAG 469
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 14 PHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAP 73
P E + AP P+CP P V +A + E + P L+P S PE A
Sbjct: 372 PEVESSPELAPPPACPSESP-----VPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAK 426
Query: 74 AKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQE 133
A P I TP + P + P +++M+E+E
Sbjct: 427 EVTASMAPP-------------TIPSATP------ATAPSATSPAQ------EEEMEEEE 461
Query: 134 KGEGSDSKESPKTKSDESGEE 154
+ E ++ E+ + +S++ GEE
Sbjct: 462 EEEEGEAGEAGEAESEKGGEE 482
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 56 PLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSK-------VGDFGDAINWPTPGEIAHK 108
P P+ A S +A A V +VPK+R+ K VGD DA P +
Sbjct: 399 PESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVE 458
Query: 109 SVQPQSHKPQPTRK---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGG 165
+ P P P + +PP+ + E E DSKE ++ + E+ Q G
Sbjct: 459 NQPPAGSNPGPESEGSGVPPRPE----EADETWDSKE----------DKIHNAENIQPGE 504
Query: 166 QKKKGNKHKWVPLQIDMKPEVPREKL 191
QK + +W PL ++ K RE L
Sbjct: 505 QKYEYKSDQWKPLNLEEKKRYDREFL 530
Score = 33.1 bits (74), Expect = 1.4
Identities = 57/258 (22%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ Q A I PG LPG ++S + +P+ P P PVL P S P
Sbjct: 145 PDDRSQGAIIADRPG-LPGPEHSPS-----ESQPSSPSPTPSPSPVLEPGSEP------N 192
Query: 76 VVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP--------KK 127
+ ++P G + ++ TP I+ ++ +P P+PT P K
Sbjct: 193 LAVLSIP----GDTMTTIQMSVEESTP--ISRETGEPYRLSPEPTPLAEPILEVEVTLSK 246
Query: 128 DMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP------LQID 181
+ E E +P E NG + + + + P +
Sbjct: 247 PVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVP 306
Query: 182 MKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPT-PAWQPEIKP---EP 237
+ P E+L + PP P + E + E +APPT P+ P P P
Sbjct: 307 IAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKE--VTASMAPPTIPSATPATAPSATSP 364
Query: 238 AWHDQDETSSVKSDGAGG 255
A ++ E + +G G
Sbjct: 365 AQEEEMEEEEEEEEGEAG 382
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 14 PHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAP 73
P E + AP P+CP P V +A + E + P L+P S PE A
Sbjct: 285 PEVESSPELAPPPACPSESP-----VPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAK 339
Query: 74 AKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQE 133
A P I TP + P + P +++M+E+E
Sbjct: 340 EVTASMAPP-------------TIPSATP------ATAPSATSPAQ------EEEMEEEE 374
Query: 134 KGEGSDSKESPKTKSDESGEE 154
+ E ++ E+ + +S++ GEE
Sbjct: 375 EEEEGEAGEAGEAESEKGGEE 395
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 56 PLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSK-------VGDFGDAINWPTPGEIAHK 108
P P+ A S +A A V +VPK+R+ K VGD DA P +
Sbjct: 322 PESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVE 381
Query: 109 SVQPQSHKPQPTRK---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGG 165
+ P P P + +PP+ + E E DSKE ++ + E+ Q G
Sbjct: 382 NQPPAGSNPGPESEGSGVPPRPE----EADETWDSKE----------DKIHNAENIQPGE 427
Query: 166 QKKKGNKHKWVPLQIDMKPEVPREKL 191
QK + +W PL ++ K RE L
Sbjct: 428 QKYEYKSDQWKPLNLEEKKRYDREFL 453
Score = 33.1 bits (74), Expect = 1.4
Identities = 57/258 (22%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ Q A I PG LPG ++S + +P+ P P PVL P S P
Sbjct: 68 PDDRSQGAIIADRPG-LPGPEHSPS-----ESQPSSPSPTPSPSPVLEPGSEP------N 115
Query: 76 VVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP--------KK 127
+ ++P G + ++ TP I+ ++ +P P+PT P K
Sbjct: 116 LAVLSIP----GDTMTTIQMSVEESTP--ISRETGEPYRLSPEPTPLAEPILEVEVTLSK 169
Query: 128 DMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP------LQID 181
+ E E +P E NG + + + + P +
Sbjct: 170 PVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVP 229
Query: 182 MKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPT-PAWQPEIKP---EP 237
+ P E+L + PP P + E + E +APPT P+ P P P
Sbjct: 230 IAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKE--VTASMAPPTIPSATPATAPSATSP 287
Query: 238 AWHDQDETSSVKSDGAGG 255
A ++ E + +G G
Sbjct: 288 AQEEEMEEEEEEEEGEAG 305
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 14 PHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAP 73
P E + AP P+CP P V +A + E + P L+P S PE A
Sbjct: 208 PEVESSPELAPPPACPSESP-----VPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAK 262
Query: 74 AKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQE 133
A P I TP + P + P +++M+E+E
Sbjct: 263 EVTASMAPP-------------TIPSATP------ATAPSATSPAQ------EEEMEEEE 297
Query: 134 KGEGSDSKESPKTKSDESGEE 154
+ E ++ E+ + +S++ GEE
Sbjct: 298 EEEEGEAGEAGEAESEKGGEE 318
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 56 PLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSK-------VGDFGDAINWPTPGEIAHK 108
P P+ A S +A A V +VPK+R+ K VGD DA P +
Sbjct: 486 PESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVE 545
Query: 109 SVQPQSHKPQPTRK---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGG 165
+ P P P + +PP+ + E E DSKE ++ + E+ Q G
Sbjct: 546 NQPPAGSNPGPESEGSGVPPRPE----EADETWDSKE----------DKIHNAENIQPGE 591
Query: 166 QKKKGNKHKWVPLQIDMKPEVPREKL 191
QK + +W PL ++ K RE L
Sbjct: 592 QKYEYKSDQWKPLNLEEKKRYDREFL 617
Score = 33.1 bits (74), Expect = 1.4
Identities = 57/258 (22%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ Q A I PG LPG ++S + +P+ P P PVL P S P
Sbjct: 232 PDDRSQGAIIADRPG-LPGPEHSPS-----ESQPSSPSPTPSPSPVLEPGSEP------N 279
Query: 76 VVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP--------KK 127
+ ++P G + ++ TP I+ ++ +P P+PT P K
Sbjct: 280 LAVLSIP----GDTMTTIQMSVEESTP--ISRETGEPYRLSPEPTPLAEPILEVEVTLSK 333
Query: 128 DMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP------LQID 181
+ E E +P E NG + + + + P +
Sbjct: 334 PVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVP 393
Query: 182 MKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPT-PAWQPEIKP---EP 237
+ P E+L + PP P + E + E +APPT P+ P P P
Sbjct: 394 IAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKE--VTASMAPPTIPSATPATAPSATSP 451
Query: 238 AWHDQDETSSVKSDGAGG 255
A ++ E + +G G
Sbjct: 452 AQEEEMEEEEEEEEGEAG 469
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 14 PHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAP 73
P E + AP P+CP P V +A + E + P L+P S PE A
Sbjct: 372 PEVESSPELAPPPACPSESP-----VPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAK 426
Query: 74 AKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQE 133
A P I TP + P + P +++M+E+E
Sbjct: 427 EVTASMAPP-------------TIPSATP------ATAPSATSPAQ------EEEMEEEE 461
Query: 134 KGEGSDSKESPKTKSDESGEE 154
+ E ++ E+ + +S++ GEE
Sbjct: 462 EEEEGEAGEAGEAESEKGGEE 482
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 56 PLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSK-------VGDFGDAINWPTPGEIAHK 108
P P+ A S +A A V +VPK+R+ K VGD DA P +
Sbjct: 290 PESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNKKEAVGDLLDAFKEANPAVPEVE 349
Query: 109 SVQPQSHKPQPTRK---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGG 165
+ P P P + +PP+ + E E DSKE ++ + E+ Q G
Sbjct: 350 NQPPAGSNPGPESEGSGVPPRPE----EADETWDSKE----------DKIHNAENIQPGE 395
Query: 166 QKKKGNKHKWVPLQIDMKPEVPREKL 191
QK + +W PL ++ K RE L
Sbjct: 396 QKYEYKSDQWKPLNLEEKKRYDREFL 421
Score = 33.1 bits (74), Expect = 1.4
Identities = 57/258 (22%), Positives = 92/258 (35%), Gaps = 38/258 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ Q A I PG LPG ++S + +P+ P P PVL P S P
Sbjct: 36 PDDRSQGAIIADRPG-LPGPEHSPS-----ESQPSSPSPTPSPSPVLEPGSEP------N 83
Query: 76 VVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP--------KK 127
+ ++P G + ++ TP I+ ++ +P P+PT P K
Sbjct: 84 LAVLSIP----GDTMTTIQMSVEESTP--ISRETGEPYRLSPEPTPLAEPILEVEVTLSK 137
Query: 128 DMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP------LQID 181
+ E E +P E NG + + + + P +
Sbjct: 138 PVPESEFSSSPLQAPTPLASHTVEIHEPNGMVPSEDLEPEVESSPELAPPPACPSESPVP 197
Query: 182 MKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPT-PAWQPEIKP---EP 237
+ P E+L + PP P + E + E +APPT P+ P P P
Sbjct: 198 IAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKE--VTASMAPPTIPSATPATAPSATSP 255
Query: 238 AWHDQDETSSVKSDGAGG 255
A ++ E + +G G
Sbjct: 256 AQEEEMEEEEEEEEGEAG 273
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 30/141 (21%)
Query: 14 PHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAP 73
P E + AP P+CP P V +A + E + P L+P S PE A
Sbjct: 176 PEVESSPELAPPPACPSESP-----VPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAK 230
Query: 74 AKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQE 133
A P I TP + P + P +++M+E+E
Sbjct: 231 EVTASMAPP-------------TIPSATP------ATAPSATSPAQ------EEEMEEEE 265
Query: 134 KGEGSDSKESPKTKSDESGEE 154
+ E ++ E+ + +S++ GEE
Sbjct: 266 EEEEGEAGEAGEAESEKGGEE 286
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 42.4 bits (98), Expect = 0.002
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDRE-KPLPFPVLAPFSNPEHSAPA 74
PE++F+ P C PG++N AL E ++E +P P PV P +
Sbjct: 427 PEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQPEPVAQPQPQSQPQLQL 486
Query: 75 KVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMK---- 130
+ V + + S+ D A+ PTP + Q Q H P RK P + +K
Sbjct: 487 QSQSQPVLQSQPPSQPEDLSLAVLQPTP-----QVTQEQGHL-LPERKDFPVESVKLTEV 540
Query: 131 --EQEKGEGSDSKESPKTKSDESGEEKN 156
E +SK KT+S G +N
Sbjct: 541 PVEPVLTVHPESKSKTKTRSRSRGRARN 568
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 42.0 bits (97), Expect = 0.003
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 254 GGARASFRGRGRGRGRGRGRGRG 276
GG + RGRGRGRGRGRGRGRG
Sbjct: 27 GGFGSGIRGRGRGRGRGRGRGRG 49
Score = 37.7 bits (86), Expect = 0.056
Identities = 21/31 (67%), Positives = 21/31 (67%), Gaps = 7/31 (22%)
Query: 254 GGARASF------RGRGRGRGRGRGRG-RGG 277
GG R F RGRGRGRGRGRGRG RGG
Sbjct: 23 GGFRGGFGSGIRGRGRGRGRGRGRGRGARGG 53
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 42.0 bits (97), Expect = 0.003
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 250 SDGAGGARASFRGRGRGRGRGRGRGRGG 277
+ G+ R RGRGRGRGRGRGRGRGG
Sbjct: 9 AQGSPPHRGRGRGRGRGRGRGRGRGRGG 36
Score = 38.9 bits (89), Expect = 0.025
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 261 RGRGRGRGRGRGRGRGGTR 279
RGRGRGRGRGRGRGRG R
Sbjct: 16 RGRGRGRGRGRGRGRGRGR 34
Score = 36.2 bits (82), Expect = 0.16
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 257 RASFRGRGRGRGRGRGRGRGG 277
R RGRGRGRGRGRGRG G
Sbjct: 18 RGRGRGRGRGRGRGRGRGGAG 38
Score = 35.0 bits (79), Expect = 0.36
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 256 ARASFRGRGRGRGRGRGRGRGGTR 279
A+ S RGRGRGRGRGRGRG R
Sbjct: 9 AQGSPPHRGRGRGRGRGRGRGRGR 32
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 41.2 bits (95), Expect = 0.005
Identities = 68/259 (26%), Positives = 100/259 (38%), Gaps = 55/259 (21%)
Query: 10 RPPFPHPELDFQEAP--------IPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLP--- 58
+P P PE+ EAP +P+ P + P V + AP KE +++ P+P
Sbjct: 10573 KPESPPPEVP--EAPKEVVPEKKVPAAPPKKP-EVTPVKVPEAP-KEVVPEKKVPVPPPK 10628
Query: 59 FPVLAPFSNPEH---SAPAKVVRAAVPKQRKGSKVGDFGD----AINWPTPGEIAHKSVQ 111
P + P PE + P K V A+P + + F + A+ P P E+ +
Sbjct: 10629 KPEVPPTKVPEVPKVAVPEKKVPEAIPPKPESPPPEVFEEPEEVALEEP-PAEVVE---E 10684
Query: 112 PQSHKPQPTRKLPPKKDMKEQEKGEGSDSK-ESPKTKSDESGEEKNGDEDCQRGGQKKKG 170
P+ P P +PPKK + E++ K E P K E +E +
Sbjct: 10685 PEPAAP-PQVTVPPKKPVPEKKAPAVVAKKPELPPVKVPEVPKEVVPE------------ 10731
Query: 171 NKHKWVPLQIDMKPEVPREKLASRPTR---------PPEPRHIPANRGEIKGS---ESAT 218
K VPL + KPE P K+ P P +P PA E+ E
Sbjct: 10732 ---KKVPLVVPKKPEAPPAKVPEVPKEVVPEKKVAVPKKPEVPPAKVPEVPKKPVLEEKP 10788
Query: 219 YVPVAPPTPAWQPEIKPEP 237
VPV + PE+ EP
Sbjct: 10789 AVPVPERAESPPPEVYEEP 10807
Score = 37.4 bits (85), Expect = 0.073
Identities = 73/292 (25%), Positives = 107/292 (36%), Gaps = 65/292 (22%)
Query: 4 RVLLSKRPPFP---------HPELDFQEA-PIPSCPGRLPGRKNSVALAAAPRKEPTGDR 53
+V + K+P P P L+ + A P+P P AP +E +
Sbjct: 10761 KVAVPKKPEVPPAKVPEVPKKPVLEEKPAVPVPERAESPPPEVYEEPEEIAPEEEIAPEE 10820
Query: 54 EKPLPF-----PVLAPFSNPEHSAPAKVV-RAAVPKQRKGSKVGDFGDAINWPTPGEIAH 107
EKP+P P + P + PE P K++ VP +K P P ++
Sbjct: 10821 EKPVPVAEEEEPEVPPPAVPEE--PKKIIPEKKVPVIKKPE-----APPPKEPEPEKVIE 10873
Query: 108 K-SVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQ 166
K ++P+ P P PPK+D+KE+ K PK K E + E +
Sbjct: 10874 KPKLKPRPPPPPPA---PPKEDVKEKI----FQLKAIPKKKVPEKPQV---PEKVELTPL 10923
Query: 167 KKKGNKHKWVPLQIDMKPEVPREK------LASRPTRPPEPRHIPANRGEIKGSESATYV 220
K G + K L + KPE P+E+ L RP EP+ P ++K
Sbjct: 10924 KVPGGEKKVRKLLPERKPE-PKEEVVLKSVLRKRP-EEEEPKVEPKKLEKVKKPAVPEPP 10981
Query: 221 PVAP----------------PTPAWQPEIK-------PEPAWHDQDETSSVK 249
P P P P PEIK PEP + E ++K
Sbjct: 10982 PPKPVEEVEVPTVTKRERKIPEPTKVPEIKPAIPLPAPEPKPKPEAEVKTIK 11033
Score = 37.0 bits (84), Expect = 0.095
Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 28/235 (11%)
Query: 11 PPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPR--KEPTGDREKPLPFP--VLAPFS 66
PP PE+ + P P +P +K A P K+P + + P+P P V AP +
Sbjct: 9974 PPAKVPEVP--KKPEEKVPVLIP-KKEKPPPAKVPEVPKKPVPEEKVPVPVPKKVEAPPA 10030
Query: 67 N----PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRK 122
P+ P K V PK+ + P K + P+ KP P K
Sbjct: 10031 KVPEVPKKPVPEKKVPVPAPKKVEAP-----------PAKVPEVPKKLIPEEKKPTPVPK 10079
Query: 123 ---LPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQ 179
PP K K++E + P+ + EE +E+ ++ + + +P +
Sbjct: 10080 KVEAPPPKVPKKREPVPVPVAL--PQEEEVLFEEEIVPEEEVLPEEEEVLPEEEEVLPEE 10137
Query: 180 IDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIK 234
++ PE E PPE ++P + E V P PA PEIK
Sbjct: 10138 EEVLPE-EEEIPPEEEEVPPEEEYVPEEEEFVPEEEVLPEVKPKVPVPAPVPEIK 10191
Score = 36.6 bits (83), Expect = 0.12
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 39/166 (23%)
Query: 5 VLLSKR--PPFPHPELDFQEAPIPSCPGRLPGRKNSVA--LAAAPRKEPTGDREKPLPFP 60
V +SKR PP PEL + AP P +P + A + P+K P + +KP+P P
Sbjct: 9276 VAISKRVEPPPKVPELPEKPAPEEVAPVPIPKKVEPPAPKVPEVPKK-PVPEEKKPVPVP 9334
Query: 61 VLAPFSN-----------PEHSAPAKVVR------AAVPKQRKG----SKVGDFGDAINW 99
P + PE P V + A VP+ +KG K+
Sbjct: 9335 KKEPAAPPKVPEVPKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTEEKITIVTQREES 9394
Query: 100 PTPG--EIAHKSVQPQSHKPQPTR--------KLP--PKKDMKEQE 133
P P EI K V P+ KP P + K+P PKK + E++
Sbjct: 9395 PPPAVPEIPKKKV-PEERKPVPRKEEEVPPPPKVPALPKKPVPEEK 9439
Score = 33.9 bits (76), Expect = 0.80
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 63 APFSNPEHSA----PAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQ 118
AP PE S P K VP++ +KV + P + K P+ +
Sbjct: 10438 APPKGPEISEKIIPPKKPPTKVVPRKEPPAKVPEV------PKKIVVEEKVRVPEEPRVP 10491
Query: 119 PTRK---LPPKKDMKEQEKGEGSDSK-ESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHK 174
PT+ LPPK+ + E++ K E+P K E+ +E + K
Sbjct: 10492 PTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPKEVVPE---------------K 10536
Query: 175 WVPLQIDMKPEVPREKLASRPTR-----------PPEPRHIPANRGEI-KGSESATYVPV 222
VP+ KPEVP K+ P PP+P P E K VP
Sbjct: 10537 KVPVPPPKKPEVPPTKVPEVPKAAVPEKKVPEAIPPKPESPPPEVPEAPKEVVPEKKVPA 10596
Query: 223 APPTPAWQPEIKP 235
APP +PE+ P
Sbjct: 10597 APPK---KPEVTP 10606
Score = 33.5 bits (75), Expect = 1.0
Identities = 65/333 (19%), Positives = 116/333 (34%), Gaps = 63/333 (18%)
Query: 445 PRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKS---EESR 501
P PVP K EEV +P +P+ + V K+ P A K EE R
Sbjct: 9408 PEERKPVPRKEEEVPPPPKVPALPKKPVPEEKVAVPVPVAKKAPPPRAEVSKKTVVEEKR 9467
Query: 502 FSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDR 561
F L +P + +++ + EE ++ + EE E + + + + +EE + E ++
Sbjct: 9468 FVAEEKLSFAVPQRVEVTRHEVSAEE-EWSYSEEEEGV-----SISVYREEEREEE-EEA 9520
Query: 562 DVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPE 621
+V + ++ + Y V+ + L + + AE E
Sbjct: 9521 EVTEYEVMEEPEEY-------------------------VVEEKLHIISKRVEAEPAE-- 9553
Query: 622 YSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAP 681
++ Q + +P + E PP P + + P + K AP
Sbjct: 9554 ----------------VTERQEKKIVLKPKIPAKIEEPP-PAKVPEAPKKIVPEKKVPAP 9596
Query: 682 EPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKD---SSQTSRFYPVVKEGRTLDA--- 735
P + P VPE P P+ ++++ + T R + +E + L A
Sbjct: 9597 VPKK-EKVPPPKVPEEPKKPVPEKKVPPKVIKMEEPLPAKVTERHMQITQEEKVLVAVTK 9655
Query: 736 --KMPRKRKTRHSSNPPLESHVGWVMDSREHRP 766
P+ R E V + RE P
Sbjct: 9656 KEAPPKARVPEEPKRAVPEEKVLKLKPKREEEP 9688
Score = 31.6 bits (70), Expect = 4.0
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 10/139 (7%)
Query: 385 KDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETES---- 440
K+ + +++++ + P P PP D + F + VP + E
Sbjct: 10864 KEPEPEKVIEKPKLKPRPPPPPPAPPKEDVKEKIFQLKAIPKKKVPEKPQVPEKVELTPL 10923
Query: 441 -APGSPRAVTPV-----PTKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARP 494
PG + V + P EEV L K P ++ + +VKK P P P
Sbjct: 10924 KVPGGEKKVRKLLPERKPEPKEEVVLKSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPPP 10983
Query: 495 KKSEESRFSHLTSLPQQLP 513
K EE +T +++P
Sbjct: 10984 KPVEEVEVPTVTKRERKIP 11002
Score = 31.2 bits (69), Expect = 5.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 648 PEPP--VDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRT 705
PE P V P ++VP PP+ +VP K+ P+ + + +P +P P
Sbjct: 10526 PEAPKEVVPEKKVPVPPPKKPEVP----PTKVPEVPKAAVPEKKVPEAIPPKPESPPPEV 10581
Query: 706 PRTPR 710
P P+
Sbjct: 10582 PEAPK 10586
Score = 30.8 bits (68), Expect = 6.8
Identities = 54/202 (26%), Positives = 75/202 (37%), Gaps = 42/202 (20%)
Query: 58 PFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKP 117
P P P + P+ P K V A VPK+ K P P V + KP
Sbjct: 9575 PPPAKVPEA-PKKIVPEKKVPAPVPKKEKV------------PPP------KVPEEPKKP 9615
Query: 118 QPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVP 177
P +K+PPK E E K E + +E KK+ VP
Sbjct: 9616 VPEKKVPPKVIKME----------EPLPAKVTERHMQITQEEKVLVAVTKKEAPPKARVP 9665
Query: 178 LQIDMKPEVPREK-LASRPTRPPEPRHIPANRGE-----IKGSESATYVPVAPPTPAWQP 231
+ K VP EK L +P R EP PA E +K + + P P P +
Sbjct: 9666 --EEPKRAVPEEKVLKLKPKREEEP---PAKVTEFRKRVVKEEKVSIEAPKREPQPIKEV 9720
Query: 232 EI--KPEPAWHDQDETSSVKSD 251
I + E A+ ++E SV+ +
Sbjct: 9721 TIMEEKERAYTLEEEAVSVQRE 9742
Score = 30.8 bits (68), Expect = 6.8
Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 14/183 (7%)
Query: 619 EPEYSQIKQEV--ENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANK 676
EPE ++E+ E K V + E+ + P P +P + +P ++VP
Sbjct: 10806 EPEEIAPEEEIAPEEEKPVPVAEEEEPEVPPPAVPEEPKKIIPE-----KKVP------- 10853
Query: 677 LFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAK 736
+ PE P V E P + P P P+ + + + K+ +
Sbjct: 10854 VIKKPEAPPPKEPEPEKVIEKPKLKPRPPPPPPAPPKEDVKEKIFQLKAIPKKKVPEKPQ 10913
Query: 737 MPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQ 796
+P K + P E V ++ R+ P+ + S P P+ L K +
Sbjct: 10914 VPEKVELTPLKVPGGEKKVRKLLPERKPEPKEEVVLKSVLRKRPEEEEPKVEPKKLEKVK 10973
Query: 797 HPS 799
P+
Sbjct: 10974 KPA 10976
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 41.2 bits (95), Expect = 0.005
Identities = 56/230 (24%), Positives = 84/230 (36%), Gaps = 33/230 (14%)
Query: 16 PELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAK 75
P+ D +AP P P L + +A K+P P P P S P++
Sbjct: 690 PKQDLSKAPEPKKPPPLVKQPTLHGSPSAKAKQPPEADSLSKPAPPKEP------SVPSE 743
Query: 76 VVRAAV----PKQRKGSK-VGDFGDAINWPTPGEIAHKSVQPQSHKP----------QPT 120
+A V PKQ K K D + + T +I VQ Q+ + +P+
Sbjct: 744 QDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPS 803
Query: 121 RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI 180
+ PP EK DSK P+ SD G + GQK+ P+Q
Sbjct: 804 QSFPPTG-----EKVSPFDSKAIPRPASDSKIISHPGPSS-ESKGQKQVD------PVQK 851
Query: 181 DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQ 230
+P+ + K++ +P P P+ P G + P P P Q
Sbjct: 852 KEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQ 901
Score = 34.7 bits (78), Expect = 0.47
Identities = 47/223 (21%), Positives = 72/223 (32%), Gaps = 31/223 (13%)
Query: 22 EAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAKVVRAAV 81
E P P + PG + A P K PT P P P +PAK
Sbjct: 384 EQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLA-----QQPGLQSPAKA----- 433
Query: 82 PKQRKGSKVGDFGDAINWPTPGEIAHKSVQP------QSHKPQPTRKLPPKKDMKEQEKG 135
G + P PG+I + P Q+ +P +LP Q+ G
Sbjct: 434 --------PGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPG 485
Query: 136 EGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRP 195
+ P + S + + Q+ G K + KP + A
Sbjct: 486 PAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPG-----STKPPSQQPGSAKPS 540
Query: 196 TRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPA 238
+ P P A + S++ + P+ PPT + P K P+
Sbjct: 541 AQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVS--PSAKQPPS 581
Score = 34.3 bits (77), Expect = 0.61
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 37/183 (20%)
Query: 651 PVDPNQEVPPGPPRFQQVPT---------DALANKLFGAPEPSTIARSLPTTVPESPNYR 701
P + + P PP+ VP+ D P ++ S TT P+ P+ +
Sbjct: 723 PPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSK 782
Query: 702 NTRTPRTPRTPQLK-DSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD 760
TP LK DS++ S+ +P E + K R +S+ + SH G +
Sbjct: 783 VQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVS---PFDSKAIPRPASDSKIISHPGPSSE 839
Query: 761 SR----------EHRPRTASISSSPSEGT--------------PTVGSYGCTPQSLPKFQ 796
S+ + P+ A SP PT G TPQ PK Q
Sbjct: 840 SKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQ 899
Query: 797 HPS 799
S
Sbjct: 900 EQS 902
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,905,862
Number of Sequences: 37866
Number of extensions: 2984143
Number of successful extensions: 18698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 522
Number of HSP's that attempted gapping in prelim test: 15583
Number of HSP's gapped (non-prelim): 3212
length of query: 1019
length of database: 18,247,518
effective HSP length: 112
effective length of query: 907
effective length of database: 14,006,526
effective search space: 12703919082
effective search space used: 12703919082
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.