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Search of human proteins with 39653325
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39653325 PHD finger protein 20-like 1 isoform 3 [Homo
sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39653325 PHD finger protein 20-like 1 isoform 3 [Homo sapiens] 587 e-168
gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens] 572 e-163
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 572 e-163
gi|18034775 PHD finger protein 20 [Homo sapiens] 207 6e-54
gi|117938328 l(3)mbt-like isoform I [Homo sapiens] 40 0.002
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 40 0.002
gi|158138528 l(3)mbt-like 4 [Homo sapiens] 40 0.002
gi|5174669 sex comb on midleg-like 2 [Homo sapiens] 39 0.005
gi|55770872 l(3)mbt-like 3 isoform b [Homo sapiens] 39 0.007
gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens] 39 0.007
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 37 0.015
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 37 0.015
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 37 0.015
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 36 0.034
gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens] 36 0.044
gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens] 36 0.044
gi|20149698 l(3)mbt-like 2 [Homo sapiens] 35 0.075
gi|158508476 mbt domain containing 1 [Homo sapiens] 35 0.098
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens] 34 0.13
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens] 34 0.13
gi|32483374 nucleolar protein 5A [Homo sapiens] 34 0.17
gi|98986459 jumonji domain containing 2A [Homo sapiens] 33 0.22
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens] 33 0.22
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens] 33 0.22
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens] 33 0.22
gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens] 33 0.37
gi|6678764 metal response element binding transcription factor 2... 32 0.49
gi|4557509 cylicin 2 [Homo sapiens] 32 0.64
gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens] 31 1.1
gi|45504380 jumonji domain containing 2B [Homo sapiens] 31 1.4
>gi|39653325 PHD finger protein 20-like 1 isoform 3 [Homo sapiens]
Length = 285
Score = 587 bits (1514), Expect = e-168
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER 180
YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER 180
Query: 181 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN 240
KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN
Sbjct: 181 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN 240
Query: 241 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV 285
QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
Sbjct: 241 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV 285
>gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]
Length = 573
Score = 572 bits (1473), Expect = e-163
Identities = 284/310 (91%), Positives = 284/310 (91%), Gaps = 26/310 (8%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQ--------------------------DWIALVKAAAA 154
YDGVIRCLKRMHIKAMPEDAKGQ DWIALVKAAAA
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
Query: 155 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 214
AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
Sbjct: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
Query: 215 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 274
GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
Sbjct: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
Query: 275 YNETAPMLEQ 284
YNETAPMLEQ
Sbjct: 301 YNETAPMLEQ 310
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 572 bits (1473), Expect = e-163
Identities = 284/310 (91%), Positives = 284/310 (91%), Gaps = 26/310 (8%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
Sbjct: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
Sbjct: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQ--------------------------DWIALVKAAAA 154
YDGVIRCLKRMHIKAMPEDAKGQ DWIALVKAAAA
Sbjct: 121 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA 180
Query: 155 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 214
AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
Sbjct: 181 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF 240
Query: 215 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 274
GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
Sbjct: 241 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED 300
Query: 275 YNETAPMLEQ 284
YNETAPMLEQ
Sbjct: 301 YNETAPMLEQ 310
>gi|18034775 PHD finger protein 20 [Homo sapiens]
Length = 1012
Score = 207 bits (528), Expect = 6e-54
Identities = 107/241 (44%), Positives = 153/241 (63%), Gaps = 14/241 (5%)
Query: 1 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
M+K PPNR GI+FE+GA+LEA D L+ WYP+ IE IDYEEGK+L+HF+RW+HRYDEW W
Sbjct: 1 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW 60
Query: 61 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 120
DS LRPLE+ LRKEGL +E+ +F+ E+VLA W+DCR+YPAK+ A+NK+GT+TV+F
Sbjct: 61 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF 120
Query: 121 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER 180
YDGV++ +K +H+KA +D + A +T K +S+ ++K K++R
Sbjct: 121 YDGVVQTVKHIHVKAFSKD----------QNIVGNARPKETDHKSLSSSPDKREKFKEQR 170
Query: 181 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR 237
K V KK++ + T P KE SE + +++PK E+ N R
Sbjct: 171 K-ATVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR 229
Query: 238 K 238
+
Sbjct: 230 E 230
Score = 29.6 bits (65), Expect = 3.2
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 99 DCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAK 158
DC + K + ++ + ++++ G+ + L+ PE++ G+ + +A+
Sbjct: 458 DCLKFFRKAKLLH----YHMKYFHGMEKSLE-------PEESPGKRHVQTRGPSASDKPS 506
Query: 159 NKTGSKPRTSANSNKDKDKDERK------WFKVPSKKEETSTCIATPDVEKKEDLPTSSE 212
+T ++ R SA+S KDK++ K + +V KK++ P+ E++ +S+
Sbjct: 507 QETLTRKRVSASSPTTKDKEKNKEKKFKEFVRVKPKKKKKKKKKTKPECPCSEEISDTSQ 566
>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
Length = 772
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 9 PGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
P + F++G +LEA+D + D + + LVHF+ W YD W S + P+
Sbjct: 341 PPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPV 400
Query: 69 ERPALRKEGLKDEEDFFD 86
+ + L +D+ D
Sbjct: 401 GWCQKQGKPLTPPQDYPD 418
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 8 RPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRP 67
RP +F + +LEA+D D E+ ++ +HF+ WSH YD WI D + P
Sbjct: 444 RPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHP 503
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 9 PGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
P + F++G +LEA+D + D + + LVHF+ W YD W S + P+
Sbjct: 341 PPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPV 400
Query: 69 ERPALRKEGLKDEEDFFD 86
+ + L +D+ D
Sbjct: 401 GWCQKQGKPLTPPQDYPD 418
Score = 39.7 bits (91), Expect = 0.003
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 8 RPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRP 67
RP +F + +LEA+D D E+ ++ +HF+ WSH YD WI D + P
Sbjct: 444 RPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHP 503
>gi|158138528 l(3)mbt-like 4 [Homo sapiens]
Length = 623
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 4 KPPNRP-GITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDS 62
+ PN P F++G +LEA+D D E ++LVHF+ W YD W +S
Sbjct: 182 RSPNGPMSKEFQVGMKLEAVDRKNPSLVCVATIADIVEDRLLVHFDNWDDSYDYWCDVNS 241
Query: 63 NRLRPL------ERPALRKEGLKDEEDF 84
++P+ R + +G + E+F
Sbjct: 242 PYVQPVGWCQENGRTLIAPQGYPNPENF 269
Score = 38.1 bits (87), Expect = 0.009
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 36 IDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
+D ++ ++ VHF+ W H+YD W+ DS + P+
Sbjct: 319 VDVDDQRVKVHFDGWDHKYDYWVEADSPDIHPI 351
>gi|5174669 sex comb on midleg-like 2 [Homo sapiens]
Length = 700
Score = 38.9 bits (89), Expect = 0.005
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 3 KKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDS 62
K+PP P F++G +LEA+D + D + ++ + F+ WS +D W +DS
Sbjct: 162 KEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDS 221
Query: 63 NRLRP 67
+ P
Sbjct: 222 RDIFP 226
>gi|55770872 l(3)mbt-like 3 isoform b [Homo sapiens]
Length = 755
Score = 38.5 bits (88), Expect = 0.007
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 13 FEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
F +G +LEA+D + D + + LVHF+ W YD W S + P+
Sbjct: 346 FRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPV 401
Score = 35.0 bits (79), Expect = 0.075
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 4 KPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSN 63
KPP+ F+ +LE +D + D ++ ++ VHF+ W++ YD WI DS
Sbjct: 445 KPPHG----FQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSP 500
Query: 64 RLRPL 68
+ P+
Sbjct: 501 DIHPV 505
>gi|55770870 l(3)mbt-like 3 isoform a [Homo sapiens]
Length = 780
Score = 38.5 bits (88), Expect = 0.007
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 13 FEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
F +G +LEA+D + D + + LVHF+ W YD W S + P+
Sbjct: 371 FRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPV 426
Score = 35.0 bits (79), Expect = 0.075
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 4 KPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSN 63
KPP+ F+ +LE +D + D ++ ++ VHF+ W++ YD WI DS
Sbjct: 470 KPPHG----FQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSP 525
Query: 64 RLRPL 68
+ P+
Sbjct: 526 DIHPV 530
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 37.4 bits (85), Expect = 0.015
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 26 QKWYPSRIEKIDYEEGKML--VHFERWSHRYDEWIYWDSNRLRPLERPALRKEGLKDEED 83
QK Y + I+ + ++G++L VH+ W+ RYDEW+ D + PL++ +K+ K ++
Sbjct: 589 QKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLDKGGPKKKQKKKAKN 647
Query: 84 FFDFKAGEE 92
D + E+
Sbjct: 648 KEDSEKDEK 656
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 37.4 bits (85), Expect = 0.015
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 26 QKWYPSRIEKIDYEEGKML--VHFERWSHRYDEWIYWDSNRLRPLERPALRKEGLKDEED 83
QK Y + I+ + ++G++L VH+ W+ RYDEW+ D + PL++ +K+ K ++
Sbjct: 589 QKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLDKGGPKKKQKKKAKN 647
Query: 84 FFDFKAGEE 92
D + E+
Sbjct: 648 KEDSEKDEK 656
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 37.4 bits (85), Expect = 0.015
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 26 QKWYPSRIEKIDYEEGKML--VHFERWSHRYDEWIYWDSNRLRPLERPALRKEGLKDEED 83
QK Y + I+ + ++G++L VH+ W+ RYDEW+ D + PL++ +K+ K ++
Sbjct: 589 QKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLDKGGPKKKQKKKAKN 647
Query: 84 FFDFKAGEE 92
D + E+
Sbjct: 648 KEDSEKDEK 656
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 36.2 bits (82), Expect = 0.034
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 26 QKWYPSRIEKIDYEEGKML--VHFERWSHRYDEWIYWDSNRLRPLER 70
QK Y + I+ D E G++L VH+ W+ RYDEWI D +RP ++
Sbjct: 585 QKMYEASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKAD-KIVRPADK 630
Score = 29.3 bits (64), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 157 AKNKTGSKPRTSANSNKDKDKDERKWFKVPSKK 189
AKNK S+NS+ D+D++E K P+KK
Sbjct: 846 AKNKESLCMENSSNSSSDEDEEETKAKMTPTKK 878
>gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens]
Length = 660
Score = 35.8 bits (81), Expect = 0.044
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 3 KKPPNRPGITFEIGARLEALDYLQKWY--PSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
K+PP+ F++G +LEA+D + P+ I ++ E +LV F+ W +D W +
Sbjct: 157 KEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSE--VLVTFDGWRGAFDYWCRF 214
Query: 61 DSNRLRPLERPALRKEGLK 79
DS + P+ +L + L+
Sbjct: 215 DSRDIFPVGWCSLTGDNLQ 233
>gi|6912642 sex comb on midleg 1 isoform 2 [Homo sapiens]
Length = 591
Score = 35.8 bits (81), Expect = 0.044
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 3 KKPPNRPGITFEIGARLEALDYLQKWY--PSRIEKIDYEEGKMLVHFERWSHRYDEWIYW 60
K+PP+ F++G +LEA+D + P+ I ++ E +LV F+ W +D W +
Sbjct: 110 KEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSE--VLVTFDGWRGAFDYWCRF 167
Query: 61 DSNRLRPLERPALRKEGLK 79
DS + P+ +L + L+
Sbjct: 168 DSRDIFPVGWCSLTGDNLQ 186
>gi|20149698 l(3)mbt-like 2 [Homo sapiens]
Length = 705
Score = 35.0 bits (79), Expect = 0.075
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 2 SKKPPNR------PGITFEIGARLEALDYLQKWY--PSRIEKIDYEEGKMLVHFERWSHR 53
SK P+R P F++G +LEA+D ++ + ++++ + + +HF+ W
Sbjct: 519 SKAAPSRLFNMDCPNHGFKVGMKLEAVDLMEPRLICVATVKRVVHR--LLSIHFDGWDSE 576
Query: 54 YDEWIYWDSNRLRPL 68
YD+W+ +S + P+
Sbjct: 577 YDQWVDCESPDIYPV 591
>gi|158508476 mbt domain containing 1 [Homo sapiens]
Length = 628
Score = 34.7 bits (78), Expect = 0.098
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 9 PGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 68
P F +G +LEA+D ++ + +HF+ W YD+W+ +S L P+
Sbjct: 488 PNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPV 547
>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
Length = 1290
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 6 PNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRL 65
PNRP + + G ++ ++ W+ SR+E++D LV + EWIY S RL
Sbjct: 341 PNRPMVLLKSGQLIKT-EWEGTWWKSRVEEVDGS----LVRILFLDDKRCEWIYRGSTRL 395
Query: 66 RPL 68
P+
Sbjct: 396 EPM 398
>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
Length = 1291
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 6 PNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRL 65
PNRP + + G ++ ++ W+ SR+E++D LV + EWIY S RL
Sbjct: 341 PNRPMVLLKSGQLIKT-EWEGTWWKSRVEEVDGS----LVRILFLDDKRCEWIYRGSTRL 395
Query: 66 RPL 68
P+
Sbjct: 396 EPM 398
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.17
Identities = 35/163 (21%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 124 VIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWF 183
+ R L++ K + ++ K + A A A+++N + + S K K K ++K
Sbjct: 435 ITRKLEKQEKKRLKKEKKR------LAALALASSENSSSTPEECEEMSEKPKKKKKQKPQ 488
Query: 184 KVPSKK--EETSTCIATPDVEK---KEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRK 238
+VP + E+ S + P +K KE+L +S ++PK P+ N +
Sbjct: 489 EVPQENGMEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSIPKRKKSTPKEETVNDPE 548
Query: 239 NNQGNSFQAKRARLNKITGLLA--SKAVGVDGAEKKEDYNETA 279
S K+ + +K + + +AVG ++KK+ +++ +
Sbjct: 549 EAGHRSGSKKKRKFSKEEPVSSGPEEAVGKSSSKKKKKFHKAS 591
>gi|98986459 jumonji domain containing 2A [Homo sapiens]
Length = 1064
Score = 33.5 bits (75), Expect = 0.22
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 90 GEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 139
GE V RWTD + Y AK A + + V+F DG +KR + + E+
Sbjct: 960 GEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEE 1009
>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 33.5 bits (75), Expect = 0.22
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 58 IYWDSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTF- 116
+YW+ N+ E AL G+ F D+ EEVL P + EA +EGT+
Sbjct: 565 LYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLL----SNIKPIQTEAWEEEGTYD 620
Query: 117 -TVQFYDG 123
T++F G
Sbjct: 621 QTLEFRRG 628
>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
Length = 744
Score = 33.5 bits (75), Expect = 0.22
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 58 IYWDSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTF- 116
+YW+ N+ E AL G+ F D+ EEVL P + EA +EGT+
Sbjct: 658 LYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLL----SNIKPIQTEAWEEEGTYD 713
Query: 117 -TVQFYDG 123
T++F G
Sbjct: 714 QTLEFRRG 721
>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 33.5 bits (75), Expect = 0.22
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 58 IYWDSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTF- 116
+YW+ N+ E AL G+ F D+ EEVL P + EA +EGT+
Sbjct: 565 LYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLL----SNIKPIQTEAWEEEGTYD 620
Query: 117 -TVQFYDG 123
T++F G
Sbjct: 621 QTLEFRRG 628
>gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens]
Length = 1047
Score = 32.7 bits (73), Expect = 0.37
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 90 GEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQDWIALV 149
GE V +W D + Y AK N + V+F DG +KR I + E+ + V
Sbjct: 940 GEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEELPKR-----V 994
Query: 150 KAAAAAAAKNKTGSKPRTSANSNKDKDKDERKW--FKVPSKKEE 191
KA +A + G+ S +S + + F + SKK +
Sbjct: 995 KARFVSAGRCHLGTCQVNSLSSPHVSQAQQETYLGFWINSKKSQ 1038
>gi|6678764 metal response element binding transcription factor 2
[Homo sapiens]
Length = 593
Score = 32.3 bits (72), Expect = 0.49
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 75 KEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAIN--KEGTFTV 118
++G K ++ F+ G++VLARW+D +Y I+ IN K+ F +
Sbjct: 34 QDGHKAKKPACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFII 79
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 32.0 bits (71), Expect = 0.64
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 134 KAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFK-VPSKKEET 192
K + KG+D ++A A K++ G K + +KD KD ++ K KK+ +
Sbjct: 219 KGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDAKKDAKEIKKGKKDKKKPS 278
Query: 193 STCIATPDVEKKE 205
ST + D KKE
Sbjct: 279 STDSDSKDDVKKE 291
Score = 28.1 bits (61), Expect = 9.2
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 68 LERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRC 127
+E A++ + KDE+ D G+E D + + K + D V
Sbjct: 232 IELQAVKADEKKDEDGKKDANKGDESKDAKKDAKEIKKGKKDKKKPSSTDSDSKDDV--- 288
Query: 128 LKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDERKWFKVPS 187
K+ K +DAK K A K SK N+ KD KD +K K
Sbjct: 289 -KKESKKDATKDAK--------KVAKKDTEKESADSKKDAKKNAKKDAKKDAKKNAKKDE 339
Query: 188 KKE 190
KK+
Sbjct: 340 KKD 342
>gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens]
Length = 1056
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 90 GEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 139
GE V +W D + Y AK N + V+F DG +KR I + E+
Sbjct: 940 GEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEE 989
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 90 GEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED---------- 139
GE V RWTD Y AK + + V+F DG +KR I + E+
Sbjct: 980 GELVELRWTDGNLYKAKFISSVTSHIYQVEFEDGSQLTVKRGDIFTLEEELPKRVRSRLS 1039
Query: 140 -AKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKD 176
+ G A AAK P + +S + +D
Sbjct: 1040 LSTGAPQEPAFSGEEAKAAKRPRVGTPLATEDSGRSQD 1077
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,680,993
Number of Sequences: 37866
Number of extensions: 535737
Number of successful extensions: 1465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1371
Number of HSP's gapped (non-prelim): 108
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.