Guide to the Human Genome
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Name: YTHDF3 Sequence: fasta or formatted (585aa) NCBI GI: 116235460
Description:

YTH domain family, member 3

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         38           2
 C cysteine            0.3          2           1
 D aspartate           4.3         25           3
 E glutamate           3.6         21           4
 F phenylalanine       3.4         20           2
 G glycine             8.7         51           2
 H histidine           2.2         13           2
 I isoleucine          4.4         26           2
 K lysine              6.2         36           1
 L leucine             5.0         29           2
 M methionine          1.7         10           1
 N asparagine          6.3         37           2
 P proline             9.9         58           4
 Q glutamine           8.5         50           4
 R arginine            3.1         18           2
 S serine              9.7         57           3
 T threonine           4.8         28           2
 V valine              6.2         36           2
 W tryptophan          1.7         10           1
 Y tyrosine            3.4         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YTH domain family, member 3 
YTHDF2                0.650   high glucose-regulated protein 8 
YTHDF1                0.644   YTH domain family, member 1 
YTHDC2                0.035   YTH domain containing 2 
YTHDC1                0.035   splicing factor YT521-B isoform 1 
BRD4                  0.034   bromodomain-containing protein 4 isoform long 
YTHDC1                0.034   splicing factor YT521-B isoform 2 
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
NCOA6                 0.029   nuclear receptor coactivator 6 
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.025   splicing factor, arginine/serine-rich 15 isoform 1 [...
SAMD1                 0.025   sterile alpha motif domain containing 1 
PPP1R13L              0.024   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.024   protein phosphatase 1, regulatory subunit 13 like [H...
SEC24D                0.024   Sec24-related protein D 
ARPP-21               0.024   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
WNK2                  0.024   WNK lysine deficient protein kinase 2 
ARID1A                0.023   AT rich interactive domain 1A isoform a 
ARID1A                0.023   AT rich interactive domain 1A isoform b 
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
R3HDM2                0.023   R3H domain containing 2 
ZNF462                0.022   zinc finger protein 462 
PHLDA1                0.022   pleckstrin homology-like domain, family A, member 1 ...
TNRC6A                0.022   trinucleotide repeat containing 6A 
AAK1                  0.021   AP2 associated kinase 1 
R3HDM1                0.020   R3H domain containing 1 
KIAA0907              0.020   hypothetical protein LOC22889 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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