Search of human proteins with 38505156

Search of human proteins with 38505156

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38505156 transcription elongation factor A protein 2 isoform
b [Homo sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38505156 transcription elongation factor A protein 2 isoform ...   549   e-157
gi|4507385 transcription elongation factor A protein 2 isoform a...   549   e-157
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ...   363   e-101
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s...   363   e-101
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ...   340   8e-94
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap...   309   2e-84
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap...   122   3e-28
gi|7662018 PHD finger protein 3 [Homo sapiens]                         62   5e-10
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       50   3e-06
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]       50   3e-06
gi|28558977 mediator complex subunit 26 [Homo sapiens]                 50   3e-06
gi|47271475 SPOC domain containing 1 [Homo sapiens]                    49   6e-06
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s...    48   1e-05
gi|208022641 elongin A [Homo sapiens]                                  44   2e-04
gi|23308505 hypothetical protein LOC127428 [Homo sapiens]              41   0.001
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    39   0.005
gi|41152076 steroid-sensitive protein 1 [Homo sapiens]                 39   0.006
gi|41152074 steroid-sensitive protein 1 [Homo sapiens]                 39   0.006
gi|23097321 zinc finger protein 383 [Homo sapiens]                     37   0.014
gi|154816198 transcription elongation factor B polypeptide 3C-li...    36   0.041
gi|156938279 transcription elongation factor B polypeptide 3C [H...    36   0.041
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]           36   0.041
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]            36   0.041
gi|34303941 zinc finger protein 567 [Homo sapiens]                     35   0.053
gi|221136803 zinc finger protein 776 [Homo sapiens]                    35   0.070
gi|45439357 elongin A2 [Homo sapiens]                                  35   0.091
gi|47271457 zinc finger protein 2 homolog [Homo sapiens]               34   0.12 
gi|32698748 zinc finger protein 248 [Homo sapiens]                     34   0.12 
gi|21389599 zinc finger protein 570 [Homo sapiens]                     33   0.20 
gi|224549033 zinc finger protein 529 isoform b [Homo sapiens]          33   0.27 

>gi|38505156 transcription elongation factor A protein 2 isoform b
           [Homo sapiens]
          Length = 272

 Score =  549 bits (1415), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
           MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA
Sbjct: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60

Query: 61  RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 120
           RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT
Sbjct: 61  RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 120

Query: 121 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 180
           AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN
Sbjct: 121 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 180

Query: 181 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 240
           VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK
Sbjct: 181 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 240

Query: 241 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
           NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Sbjct: 241 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272


>gi|4507385 transcription elongation factor A protein 2 isoform a
           [Homo sapiens]
          Length = 299

 Score =  549 bits (1415), Expect = e-157
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
           MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA
Sbjct: 28  MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 87

Query: 61  RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 120
           RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT
Sbjct: 88  RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLT 147

Query: 121 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 180
           AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN
Sbjct: 148 AALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRN 207

Query: 181 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 240
           VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK
Sbjct: 208 VLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKK 267

Query: 241 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
           NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Sbjct: 268 NCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299


>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
           sapiens]
          Length = 287

 Score =  363 bits (933), Expect = e-101
 Identities = 188/278 (67%), Positives = 222/278 (79%), Gaps = 7/278 (2%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA-SDAK 59
           +DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWKKLLD  S  K
Sbjct: 11  LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEK 70

Query: 60  ARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNK 114
             +  +  P  TS     +R+ S +      R +   A  T  +++FP  P T D+VR K
Sbjct: 71  DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPSTSDSVRLK 129

Query: 115 CREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 174
           CREML AAL+T  D++AIGAD E L +QIEE I++++ NTDMKYKNRVRSRISNLKDAKN
Sbjct: 130 CREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKN 189

Query: 175 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTC 234
           P+LR+NVLCG I P   A MT+EEMASDELKE+RK +TKEAIREHQMA+TGGTQTDLFTC
Sbjct: 190 PNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTC 249

Query: 235 GKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
           GKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 250 GKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287


>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
           sapiens]
          Length = 301

 Score =  363 bits (933), Expect = e-101
 Identities = 188/278 (67%), Positives = 222/278 (79%), Gaps = 7/278 (2%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA-SDAK 59
           +DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWKKLLD  S  K
Sbjct: 25  LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEK 84

Query: 60  ARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNK 114
             +  +  P  TS     +R+ S +      R +   A  T  +++FP  P T D+VR K
Sbjct: 85  DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPSTSDSVRLK 143

Query: 115 CREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 174
           CREML AAL+T  D++AIGAD E L +QIEE I++++ NTDMKYKNRVRSRISNLKDAKN
Sbjct: 144 CREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKN 203

Query: 175 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTC 234
           P+LR+NVLCG I P   A MT+EEMASDELKE+RK +TKEAIREHQMA+TGGTQTDLFTC
Sbjct: 204 PNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTC 263

Query: 235 GKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
           GKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 264 GKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301


>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
           sapiens]
          Length = 280

 Score =  340 bits (872), Expect = 8e-94
 Identities = 176/260 (67%), Positives = 206/260 (79%), Gaps = 7/260 (2%)

Query: 19  STRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS----- 72
           STR+GMSVNA+RKQS+DEEV +LAKSLIKSWKKLLD  S  K  +  +  P  TS     
Sbjct: 22  STRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPE 81

Query: 73  SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAI 132
           +R+ S +      R +   A  T  +++FP  P T D+VR KCREML AAL+T  D++AI
Sbjct: 82  AREESTSSGNVSNRKDETNARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAI 140

Query: 133 GADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIA 192
           GAD E L +QIEE I++++ NTDMKYKNRVRSRISNLKDAKNP+LR+NVLCG I P   A
Sbjct: 141 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 200

Query: 193 VMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSS 252
            MT+EEMASDELKE+RK +TKEAIREHQMA+TGGTQTDLFTCGKC+KKNCTYTQVQTRS+
Sbjct: 201 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSA 260

Query: 253 DEPMTTFVVCNECGNRWKFC 272
           DEPMTTFVVCNECGNRWKFC
Sbjct: 261 DEPMTTFVVCNECGNRWKFC 280


>gi|41350335 transcription elongation factor A (SII), 3 [Homo
           sapiens]
          Length = 348

 Score =  309 bits (791), Expect = 2e-84
 Identities = 163/322 (50%), Positives = 221/322 (68%), Gaps = 50/322 (15%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA----- 55
           +DLL++L +  +++ LLQ+TR+G++VN +RK  SD+EV++LAK LIK+WK+LLD+     
Sbjct: 27  LDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPK 86

Query: 56  -------SDAKARERG---------RGMPLPTSSRD--------------ASEAP----- 80
                    AK +E+G          G+  P   R+              AS +P     
Sbjct: 87  GEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSSPKRPSV 146

Query: 81  ---DPSRKRPELPRAPSTPRITTFP-------PVPVTCDAVRNKCREMLTAALQTDHDHV 130
              + S+ + E P+ PS+P   TF        P  +T D+VR+KC EML+AAL+ D D+ 
Sbjct: 147 ERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALKADDDYK 206

Query: 131 AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQ 190
             G +C++++++IE+ I++++ +TDMKY+NRVRSRISNLKD +NP LRRNVL GAI+   
Sbjct: 207 DYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGL 266

Query: 191 IAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR 250
           IA MT+EEMASDEL+E+R AMT+EAIREHQMA+TGGT TDLF C KC+KKNCTY QVQTR
Sbjct: 267 IAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTR 326

Query: 251 SSDEPMTTFVVCNECGNRWKFC 272
           S+DEPMTTFV+CNECGNRWKFC
Sbjct: 327 SADEPMTTFVLCNECGNRWKFC 348


>gi|154146187 TFIIS central domain-containing protein 1 [Homo
           sapiens]
          Length = 381

 Score =  122 bits (307), Expect = 3e-28
 Identities = 91/319 (28%), Positives = 142/319 (44%), Gaps = 58/319 (18%)

Query: 4   LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARER 63
           L EL+ + +T   LQ T V  +V  + K      +   AK L+  WK +   + +KAR  
Sbjct: 60  LTELETIYVTKEHLQETDVVRAVYRVLKNCPSVALKKKAKCLLSKWKAVYKQTHSKARNS 119

Query: 64  GRGMPLPTSSRDAS-EAPDPSRKR-----------------------PELPRAPSTPRIT 99
            +  P+  +  + S  + DPS+                         PE       P+  
Sbjct: 120 PKLFPVRGNKEENSGPSHDPSQNETLGICSSNSLSSQDVAKLSEMIVPENRAIQLKPKEE 179

Query: 100 TF-----------------PPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQ 142
            F                 P  P+     R KC E+L AAL +           +  + +
Sbjct: 180 HFGDGDPESTGKRSSELLDPTTPM-----RTKCIELLYAALTSSSTDQPKADLWQNFARE 234

Query: 143 IEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASD 202
           IEE +F        KYK  +RS+++NLK+ +N  L++N+L G  +P++ A MT  EMA+ 
Sbjct: 235 IEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANK 294

Query: 203 ELKEIRKAMTKEAIREHQMART-GGTQTDLFTCGKCRKKNCTYT-----------QVQTR 250
           ELK++R + T+  I+EH + +   GTQT+   C +C K NC  T            V+  
Sbjct: 295 ELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNS 354

Query: 251 SSDEPMTTFVVCNECGNRW 269
           + DE M T+V+CNECG +W
Sbjct: 355 NPDEQMMTYVICNECGEQW 373


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 110  AVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNL 169
            +VR+  +++L   L TD +         +++ +IE+ +F    +TD KYKN+ RS + NL
Sbjct: 930  SVRHSLKDILMKRL-TDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNL 988

Query: 170  KDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAI 216
            KD KN  L + VL G +TP  +  M+ EE+AS EL   R+   +  I
Sbjct: 989  KDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTI 1035


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 47  KSWKKLLDASDAKA-RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVP 105
           + W     +S A A R+ G   P P ++  AS+    S       R P  P +    P P
Sbjct: 597 RPWLSATPSSGASAARQAG---PAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAP 653

Query: 106 VTCDA---------------VRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRD 150
               A               +R   +E+L   +    D +    +  +++  IE+ +F  
Sbjct: 654 GRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNL 713

Query: 151 VGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 204
              TD +YK++ RS + NLKD KN  L   VL   I+  ++  +  EE+ S EL
Sbjct: 714 FQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767


>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
          Length = 1189

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 47  KSWKKLLDASDAKA-RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVP 105
           + W     +S A A R+ G   P P ++  AS+    S       R P  P +    P P
Sbjct: 597 RPWLSATPSSGASAARQAG---PAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAP 653

Query: 106 VTCDA---------------VRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRD 150
               A               +R   +E+L   +    D +    +  +++  IE+ +F  
Sbjct: 654 GRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNL 713

Query: 151 VGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 204
              TD +YK++ RS + NLKD KN  L   VL   I+  ++  +  EE+ S EL
Sbjct: 714 FQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767


>gi|28558977 mediator complex subunit 26 [Homo sapiens]
          Length = 600

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 1  MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD-ASDAK 59
          ++++  L+  PIT   L+ TR+G  +N +RK++ +EE+   AK L++SW+KL++ A   +
Sbjct: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHE 91

Query: 60 ARERG 64
          A  RG
Sbjct: 92 AALRG 96


>gi|47271475 SPOC domain containing 1 [Homo sapiens]
          Length = 1216

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 70  PTSSRDASEAPDPSRKRPELPRAPS-TPRITTFPP---VPVTCDAVRNKCREMLTAALQT 125
           P+S    S++     +   LP  P  + ++    P   + V    VR+  +E+L   L+ 
Sbjct: 568 PSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSM-QEVLWTRLRE 626

Query: 126 DHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGA 185
             D V      E ++A IE  ++     T+ +YK + RS + NL+D +N DL   V+ G 
Sbjct: 627 LPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGD 686

Query: 186 ITPQQIAVMTSEEMASDELKEIRKAMTKEAI 216
           +TP  +  M+S ++A  EL   R    K  +
Sbjct: 687 VTPYDLVRMSSMQLAPQELARWRDQEEKRGL 717


>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
           sapiens]
          Length = 108

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 233 TCGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
           +C KC      + Q+QTRS+DEPMTTF  C   +CG+RW+
Sbjct: 68  SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107


>gi|208022641 elongin A [Homo sapiens]
          Length = 798

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 4   LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 53
           L++L  +PIT+ +L  T VG +VN+LRK    E V + A+ L+  WKKL+
Sbjct: 56  LKKLSTLPITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLV 102


>gi|23308505 hypothetical protein LOC127428 [Homo sapiens]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 1   MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
           ++ L+ELK    +  +L+STR+G +VN +RK  SD EV +LA+ +   WK   +    + 
Sbjct: 60  VEALQELKKKIPSREVLKSTRIGHTVNKMRKH-SDSEVASLAREVYTEWKTFTEKHSNRP 118

Query: 61  RERGRGMPLPTSSR 74
               R  P   S R
Sbjct: 119 SIEVRSDPKTESLR 132


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 3   LLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARE 62
           +L  L+ +P+T+  L+       V  L K S DEE+  LA  L+  W  ++       R 
Sbjct: 94  ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVI-------RS 146

Query: 63  RGRGMPLPTSSRDASEAPDPSRKRPELPRAPST 95
           +    P   + +D  +  D  + R  LP  P T
Sbjct: 147 QSSTQP---AEKDKKKRKDEGKSRTTLPERPLT 176


>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 56  SDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPV------TCD 109
           S+ K  +  R    PT           +   P LP+ PSTPR TT PP P       T  
Sbjct: 308 SEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATTVTRSTSR 367

Query: 110 AVRNKCREMLTAALQT 125
           AV    R M T A  T
Sbjct: 368 AVTVAARPMTTTAFPT 383


>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
          Length = 950

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 56  SDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPV------TCD 109
           S+ K  +  R    PT           +   P LP+ PSTPR TT PP P       T  
Sbjct: 308 SEKKKEDPRRAQVPPTRESRVKVLRKLAATAPALPQPPSTPRATTLPPAPATTVTRSTSR 367

Query: 110 AVRNKCREMLTAALQT 125
           AV    R M T A  T
Sbjct: 368 AVTVAARPMTTTAFPT 383


>gi|23097321 zinc finger protein 383 [Homo sapiens]
          Length = 475

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 203 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVV 261
           + KE  KA T+ + +R+HQ    G    +   CGK   +N    Q Q   +DE       
Sbjct: 367 DCKECGKAFTQSSQLRQHQRIHAGEKPFECLECGKAFTQNSQLFQHQRIHTDEKP---YE 423

Query: 262 CNECGNRWKFC 272
           CNECG  +  C
Sbjct: 424 CNECGKAFNKC 434


>gi|154816198 transcription elongation factor B polypeptide 3C-like
           [Homo sapiens]
          Length = 546

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 35/122 (28%)

Query: 4   LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL--------DA 55
           L++L A+P+T  +L  T +  +V  LRK    + V   A+ L   WKKL+        D 
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLVLVDRNTGPDP 87

Query: 56  SD-------------AKARERGRGMP-LPTSSRDASEAPD---------PSRKRPELPRA 92
            D              + RE+  G P   T+ R  S +P+         P ++RP  PR+
Sbjct: 88  QDPEESASRQRFGEALQEREKAWGFPENATAPRSPSHSPEHRRTARRTPPGQQRPH-PRS 146

Query: 93  PS 94
           PS
Sbjct: 147 PS 148


>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
           sapiens]
          Length = 546

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 35/122 (28%)

Query: 4   LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL--------DA 55
           L++L A+P+T  +L  T +  +V  LRK    + V   A+ L   WKKL+        D 
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLVLVDRNTGPDP 87

Query: 56  SD-------------AKARERGRGMP-LPTSSRDASEAPD---------PSRKRPELPRA 92
            D              + RE+  G P   T+ R  S +P+         P ++RP  PR+
Sbjct: 88  QDPEESASRQRFGEALQEREKAWGFPENATAPRSPSHSPEHRRTARRTPPGQQRPH-PRS 146

Query: 93  PS 94
           PS
Sbjct: 147 PS 148


>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
          Length = 659

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 213 KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECG 266
           K A+ +HQ   TG        CGKC  +K+   T ++T + ++P      CNECG
Sbjct: 355 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 405



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 215 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR--SSDEPMTTFVVCNECG 266
           A+  HQ   TG    + + CGKC  +  +Y  +  R  S ++P      CNECG
Sbjct: 553 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 601


>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
          Length = 697

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 213 KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECG 266
           K A+ +HQ   TG        CGKC  +K+   T ++T + ++P      CNECG
Sbjct: 393 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 443



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 215 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR--SSDEPMTTFVVCNECG 266
           A+  HQ   TG    + + CGKC  +  +Y  +  R  S ++P      CNECG
Sbjct: 591 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 639


>gi|34303941 zinc finger protein 567 [Homo sapiens]
          Length = 616

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 201 SDELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTT 258
           S E  +  KA ++++ +  HQ   TG        CGKC R+K       +T + ++P   
Sbjct: 529 SYECPQCGKAFSRKSYLIHHQRTHTGEKPYKCSECGKCFRQKTNLIVHQRTHTGEKP--- 585

Query: 259 FVVCNECGNRWKF 271
             VCNECG  + +
Sbjct: 586 -YVCNECGKSFSY 597


>gi|221136803 zinc finger protein 776 [Homo sapiens]
          Length = 518

 Score = 35.0 bits (79), Expect = 0.070
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 203 ELKEIRKAMT-KEAIREHQMARTGGTQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFV 260
           E KE RK+   K  + EHQ   TG    +   CGKC  +K       Q  S + P     
Sbjct: 405 ECKECRKSFRYKSHLTEHQRVHTGERPYECRECGKCFHQKGSLIQHQQIHSGERPHE--- 461

Query: 261 VCNECG 266
            C ECG
Sbjct: 462 -CGECG 466


>gi|45439357 elongin A2 [Homo sapiens]
          Length = 753

 Score = 34.7 bits (78), Expect = 0.091
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 4   LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARER 63
           L++L A+P+T  +L  T +  +V  LRK    + V   A+ L   WKKL+   D   R  
Sbjct: 31  LQKLSALPMTADILAETGIRKTVKRLRKH---QHVGDFARDLAARWKKLV-LVDRNTRPG 86

Query: 64  GRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPP 103
            +      S +   EA     K    P   + PR  +  P
Sbjct: 87  PQDPEESASRQRFGEALQDQEKAWGFPENATAPRSPSHSP 126


>gi|47271457 zinc finger protein 2 homolog [Homo sapiens]
          Length = 461

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 203 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ-TRSSDEPMTTFV 260
           E  E  KA ++ A + EHQ   TG    +   CGK   KN + T  Q T + ++P     
Sbjct: 383 ECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEKPYQ--- 439

Query: 261 VCNECG 266
            CNECG
Sbjct: 440 -CNECG 444



 Score = 28.5 bits (62), Expect = 6.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 203 ELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVV 261
           E  E  KA ++   +  HQ + TG    +   CGK   K+ T T  Q   + E       
Sbjct: 243 ECNECGKAFSQSMHLIVHQRSHTGEKPYECSQCGKAFSKSSTLTLHQRNHTGEKP---YK 299

Query: 262 CNECG 266
           CN+CG
Sbjct: 300 CNKCG 304


>gi|32698748 zinc finger protein 248 [Homo sapiens]
          Length = 579

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 203 ELKEIRKAM-TKEAIREHQMARTGGTQTDLFTCGK--CRKKNCTYTQVQTRSSDEPMTTF 259
           E K+  K    K  + EHQ   TG    +   CGK  C +   T  Q +T + ++P    
Sbjct: 437 ECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQ-RTHTGEKPF--- 492

Query: 260 VVCNECGNRWKFC 272
            +CNECG    FC
Sbjct: 493 -ICNECGK--SFC 502



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 203 ELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVC 262
           E K   K   K A+ +HQ+   GG   D    G    K    TQ++   + E   TF  C
Sbjct: 326 EYKVSDKTWEKSALLKHQIVHMGGKSYDYNENGSNFSKKSHLTQLRRAHTGE--KTF-EC 382

Query: 263 NECG 266
            ECG
Sbjct: 383 GECG 386



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 213 KEAIREHQMARTGGTQTDLFTCGK--CRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 270
           K  + +HQ   TG    +   CGK  C+K + T  Q +T + ++P      C +CG    
Sbjct: 392 KSNLTQHQRTHTGEKPYECTECGKAFCQKPHLTNHQ-RTHTGEKPYE----CKQCGK--T 444

Query: 271 FC 272
           FC
Sbjct: 445 FC 446


>gi|21389599 zinc finger protein 570 [Homo sapiens]
          Length = 536

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 205 KEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ-TRSSDEPMTTFVVC 262
           +E RKA ++ A + +HQ   TG    +   CGK    + + TQ Q   + ++P      C
Sbjct: 417 QECRKAFSQIAYLAQHQRVHTGEKPYECIECGKAFSNDSSLTQHQRVHTGEKPYE----C 472

Query: 263 NECGNRWKFC 272
             CG  + +C
Sbjct: 473 TVCGKAFSYC 482



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 189 QQIAVMTSEEMASDELKEIRKAMTKEA-IREHQMARTGGTQTDLFTCGKCRKKNCTYTQV 247
           Q + V T E+    E K  RKA ++ A + +HQ   TG    +   CGK      +  Q 
Sbjct: 291 QHLRVHTGEKPY--ECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQH 348

Query: 248 Q-TRSSDEPMTTFVVCNECG 266
           Q   + ++P      CN CG
Sbjct: 349 QRVHTGEKPYE----CNVCG 364


>gi|224549033 zinc finger protein 529 isoform b [Homo sapiens]
          Length = 545

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 215 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQ-TRSSDEPMTTFVVCNECGN 267
           A+ EHQ   TG    +   CGK  + + ++T+ Q   + D+P      C ECGN
Sbjct: 474 ALTEHQRIHTGEKPYECKACGKAFRHSSSFTKHQRIHTDDKPYE----CKECGN 523


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,408,766
Number of Sequences: 37866
Number of extensions: 499204
Number of successful extensions: 4180
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 3905
Number of HSP's gapped (non-prelim): 501
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.