Guide to the Human Genome
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Name: FBXW9 Sequence: fasta or formatted (458aa) NCBI GI: 124248558
Description:

F-box and WD-40 domain protein 9

Referenced in:

Cullins and SCF Complexes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         37           2
 C cysteine            2.6         12           1
 D aspartate           7.4         34           3
 E glutamate           4.4         20           2
 F phenylalanine       1.7          8           1
 G glycine             5.9         27           2
 H histidine           3.3         15           1
 I isoleucine          2.8         13           2
 K lysine              2.4         11           2
 L leucine            13.1         60           3
 M methionine          0.7          3           1
 N asparagine          2.6         12           1
 P proline             5.2         24           2
 Q glutamine           4.1         19           2
 R arginine            7.6         35           2
 S serine              9.8         45           2
 T threonine           4.8         22           2
 V valine              8.3         38           3
 W tryptophan          2.6         12           1
 Y tyrosine            2.4         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box and WD-40 domain protein 9 
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.056   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR69                 0.050   WD repeat domain 69 
FBXW11                0.048   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.048   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.048   F-box and WD repeat domain containing 11 isoform B [...
BTRC                  0.046   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.046   beta-transducin repeat containing protein isoform 1 ...
ATG16L1               0.043   APG16 autophagy 16-like isoform 1 
ATG16L1               0.043   APG16 autophagy 16-like isoform 2 
WDR12                 0.041   WD repeat domain 12 protein 
ATG16L2               0.041   ATG16 autophagy related 16-like 2 
KATNB1                0.039   katanin p80 subunit B 1 
NSMAF                 0.035   neutral sphingomyelinase (N-SMase) activation associ...
NSMAF                 0.035   neutral sphingomyelinase (N-SMase) activation assoc...
WDR5B                 0.034   WD repeat domain 5B 
WDR5                  0.034   WD repeat domain 5 
WDR5                  0.034   WD repeat domain 5 
WSB2                  0.033   WD SOCS-box protein 2 
TRAF7                 0.033   TNF receptor-associated factor 7 
WDR38                 0.033   WD repeat domain 38 
WDR51A                0.033   WD repeat domain 51A isoform 3 
WDR51A                0.033   WD repeat domain 51A isoform 2 
WDR51A                0.033   WD repeat domain 51A isoform 1 
UTP15                 0.032   UTP15, U3 small nucleolar ribonucleoprotein, homolog...
WSB1                  0.032   WD repeat and SOCS box-containing 1 isoform 1 
WSB1                  0.032   WD repeat and SOCS box-containing 1 isoform 2 
NLE1                  0.030   Notchless gene homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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