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Search of human proteins with 38455416
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens] 483 e-137
gi|40255245 G protein-coupled receptor 51 [Homo sapiens] 36 0.025
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 33 0.16
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 32 0.47
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 32 0.47
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 32 0.62
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 32 0.62
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 32 0.62
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 32 0.62
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 32 0.62
gi|52345387 meteorin, glial cell differentiation regulator-like ... 32 0.62
gi|92859638 synaptotagmin V [Homo sapiens] 31 0.81
gi|145386517 phostensin [Homo sapiens] 31 1.1
gi|199559805 phostensin [Homo sapiens] 31 1.1
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 31 1.1
gi|12597625 activating transcription factor 5 [Homo sapiens] 30 1.4
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 30 1.4
gi|58218970 protease, serine, 36 [Homo sapiens] 30 1.4
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 30 1.4
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 30 1.4
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 30 1.8
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 30 1.8
gi|188497703 semaphorin 3F [Homo sapiens] 30 1.8
gi|151101449 solute carrier family 4, sodium bicarbonate cotrans... 30 1.8
gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens] 30 1.8
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 30 1.8
gi|167621456 kinase suppressor of ras 2 [Homo sapiens] 30 1.8
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 30 2.3
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 30 2.3
gi|21361699 sphingosine kinase 2 [Homo sapiens] 30 2.3
>gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens]
Length = 235
Score = 483 bits (1242), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV 60
MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV
Sbjct: 1 MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTV 60
Query: 61 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL 120
ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL
Sbjct: 61 ASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCL 120
Query: 121 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT 180
RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT
Sbjct: 121 RFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPT 180
Query: 181 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH 235
APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH
Sbjct: 181 APQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH 235
>gi|40255245 G protein-coupled receptor 51 [Homo sapiens]
Length = 941
Score = 36.2 bits (82), Expect = 0.025
Identities = 26/59 (44%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 170 SPRPLEATAPTAPQPP----LLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPV 224
SPR P P PP LLLLLLLP+ L L AW W R PRP PP+
Sbjct: 3 SPRSSGQPGPPPPPPPPPARLLLLLLLPLLLPLAPGAW--GW---ARGAPRPPPSSPPL 56
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 33.5 bits (75), Expect = 0.16
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 166 PPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGE-QVPPV 224
P W L + A A PP+LLLLL P LL A H RR P+P +P
Sbjct: 3 PAAW----LRSAAARALLPPMLLLLLQPPPLLARALPPDAHHLHAERRGPQPWHAALPSS 58
Query: 225 PSP 227
P+P
Sbjct: 59 PAP 61
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 32.0 bits (71), Expect = 0.47
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 160 PDSSTLPPPWSPRPLEATA----PTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTP 215
P +S PP P P+ T P P+PP+ ++ LP G ++ +H R P
Sbjct: 507 PITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRI-NVVP 565
Query: 216 RPGEQVPPVPSPQ 228
P PP+ +P+
Sbjct: 566 MP-PSAPPIMAPR 577
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 32.0 bits (71), Expect = 0.47
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 160 PDSSTLPPPWSPRPLEATA----PTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTP 215
P +S PP P P+ T P P+PP+ ++ LP G ++ +H R P
Sbjct: 572 PITSVPRPPTMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRI-NVVP 630
Query: 216 RPGEQVPPVPSPQ 228
P PP+ +P+
Sbjct: 631 MP-PSAPPIMAPR 642
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 31.6 bits (70), Expect = 0.62
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSP 227
P SP P E P P L P G A WC R RR P+P PP P+P
Sbjct: 62 PRSPAPREGPPPVLASPAGHL----PGGR---TARWCSG--RARRPPPQPSRPAPPPPAP 112
Query: 228 QDLL 231
L
Sbjct: 113 PSAL 116
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 0.62
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSP 227
P SP P E P P L P G A WC R RR P+P PP P+P
Sbjct: 45 PRSPAPREGPPPVLASPAGHL----PGGR---TARWCSG--RARRPPPQPSRPAPPPPAP 95
Query: 228 QDLL 231
L
Sbjct: 96 PSAL 99
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 0.62
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSP 227
P SP P E P P L P G A WC R RR P+P PP P+P
Sbjct: 53 PRSPAPREGPPPVLASPAGHL----PGGR---TARWCSG--RARRPPPQPSRPAPPPPAP 103
Query: 228 QDLL 231
L
Sbjct: 104 PSAL 107
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 0.62
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSP 227
P SP P E P P L P G A WC R RR P+P PP P+P
Sbjct: 45 PRSPAPREGPPPVLASPAGHL----PGGR---TARWCSG--RARRPPPQPSRPAPPPPAP 95
Query: 228 QDLL 231
L
Sbjct: 96 PSAL 99
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 0.62
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSP 227
P SP P E P P L P G A WC R RR P+P PP P+P
Sbjct: 53 PRSPAPREGPPPVLASPAGHL----PGGR---TARWCSG--RARRPPPQPSRPAPPPPAP 103
Query: 228 QDLL 231
L
Sbjct: 104 PSAL 107
>gi|52345387 meteorin, glial cell differentiation regulator-like
[Homo sapiens]
Length = 311
Score = 31.6 bits (70), Expect = 0.62
Identities = 19/30 (63%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 168 PWSPRPLEATAPTAPQPPLLLLLLLPVGLL 197
PW PRP AP P PPL LLLLL GLL
Sbjct: 15 PW-PRP---PAPGPPPPPLPLLLLLLAGLL 40
>gi|92859638 synaptotagmin V [Homo sapiens]
Length = 386
Score = 31.2 bits (69), Expect = 0.81
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 160 PDSSTLPPPWSPRPLEATAPT-APQPP-LLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRP 217
P+ T PP P +++ + P PP L ++L GLL+ + +CL+ + RRRT +
Sbjct: 3 PEPPTPGPPSPDTPPDSSRISHGPVPPWALATIVLVSGLLIFSCCFCLYRKSCRRRTGKK 62
Query: 218 GE 219
+
Sbjct: 63 SQ 64
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 147 RQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPTAPQPP 185
RQ +ELQ P + PPP APTAPQPP
Sbjct: 414 RQQEEEAVELQPPPPAPLSPPP--------PAPTAPQPP 444
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 147 RQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPTAPQPP 185
RQ +ELQ P + PPP APTAPQPP
Sbjct: 414 RQQEEEAVELQPPPPAPLSPPP--------PAPTAPQPP 444
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 30.8 bits (68), Expect = 1.1
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 171 PRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDL 230
P EA+ P P PL P L L++ + T R P P Q PP P P DL
Sbjct: 501 PEQEEASTPMDPSRPL------PGSQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDL 554
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 30.4 bits (67), Expect = 1.4
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 161 DSSTLPPPWSPRPL-EATAPTAPQPPLLLLLL-LP----VGLLLLAAAWCLH--WQRTRR 212
D+ LPPP SP PL P AP PL L LP + L L A +C + Q
Sbjct: 118 DAPPLPPP-SPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLDLLAIYCRNEAGQEEVG 176
Query: 213 RTPRPGEQVPPVPSP 227
P P Q PP PSP
Sbjct: 177 MPPLPPPQQPPPPSP 191
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 30.4 bits (67), Expect = 1.4
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 166 PPPWSPRPLEATAP---TAPQPP---LLLLLLLPVGLL-----LLAAAWCLHWQRTRRRT 214
PPP P PL A P +A PP LL + L + + LL + L + + +
Sbjct: 9 PPPPPPPPLAAPPPPGASAKGPPARKLLFMCTLSLSVTYLCYSLLGGSGSLQFPLALQES 68
Query: 215 PRPGEQVPPVPSPQDLL 231
P + PP P P LL
Sbjct: 69 PGAAAEPPPSPPPPSLL 85
>gi|58218970 protease, serine, 36 [Homo sapiens]
Length = 855
Score = 30.4 bits (67), Expect = 1.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 162 SSTLPPPWSPRP----LEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTP 215
S LP RP LE ++ P P L + L P G+ A+ W L W+ + R P
Sbjct: 667 SIRLPQHLGLRPPLALLELSSRVEPSPSALPICLHPAGIPPGASCWVLGWKEPQDRVP 724
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 95 QGLLERVNTEIHFVTKCAFQPPPSCLRFVQTNISRLL---QETSEQLVALKPWITRQNFS 151
Q LER E+H S L +SRLL QE S+Q ++ F+
Sbjct: 328 QAGLERRLREMHEAQLGRAGAAASRLAEQAAQLSRLLAEAQERSQQGGLRLLQDIKETFN 387
Query: 152 RCLELQCQPDSSTLPPPWSPRPLE 175
RC E+Q QP P WSP P +
Sbjct: 388 RCEEVQLQP-----PEVWSPDPCQ 406
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 95 QGLLERVNTEIHFVTKCAFQPPPSCLRFVQTNISRLL---QETSEQLVALKPWITRQNFS 151
Q LER E+H S L +SRLL QE S+Q ++ F+
Sbjct: 328 QAGLERRLREMHEAQLGRAGAAASRLAEQAAQLSRLLAEAQERSQQGGLRLLQDIKETFN 387
Query: 152 RCLELQCQPDSSTLPPPWSPRPLE 175
RC E+Q QP P WSP P +
Sbjct: 388 RCEEVQLQP-----PEVWSPDPCQ 406
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 6 PAWSPTTYLLLLLLLSSGLSGTQ----DCSFQHSPISSDFAVKIRELSDYLLQDYP 57
P S T ++ L GL+G + D F+HSP+S D K+ E SD++ + P
Sbjct: 75 PHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGP 130
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 160 PDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLL-----AAAWCLHWQRTRRRT 214
PD PPP +P P+ P P LL PVG+ L W + +R RR
Sbjct: 175 PDPGRRPPPAAPAPVVHVGPVLP------LLHDPVGVPLAPLGHGGVDWAENKERPRRLR 228
Query: 215 PRPGEQVPPVP 225
R PP P
Sbjct: 229 LRSQRFRPPSP 239
>gi|188497703 semaphorin 3F [Homo sapiens]
Length = 785
Score = 30.0 bits (66), Expect = 1.8
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 163 STLPPPWS---PRPLEATAPTAPQPPLLLLLLLP-VGLLLLAAAWCLHWQRTRRRTPRPG 218
+ L PP S P P A PT P L LL P VGL+ +C + R +PR
Sbjct: 704 AALFPPLSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLI---HQYCQGYWRHVPPSPREA 760
Query: 219 EQVPPVPSPQD 229
P P PQD
Sbjct: 761 PGAPRSPEPQD 771
>gi|151101449 solute carrier family 4, sodium bicarbonate
cotransporter, member 9 [Homo sapiens]
Length = 959
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 155 ELQCQPDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRR 212
EL PD T P P P E+ P+ PLL + L LL L W+ T R
Sbjct: 24 ELDSNPDPGTGPSPDGPSDTESKELGVPKDPLLFIQLNE----LLGWPQALEWRETGR 77
>gi|17511435 roundabout homolog 4, magic roundabout [Homo sapiens]
Length = 1007
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 153 CLELQCQPDSSTLPP----PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQ 208
CL L+ + +T P PW+ LE T +P ++ + + LLLL A C+H +
Sbjct: 436 CLLLEQAMERATQEPSEHGPWT---LEQLRATLKRPEVIATCGVALWLLLLGTAVCIHRR 492
Query: 209 RTRRRTPRPG 218
R R PG
Sbjct: 493 RRARVHLGPG 502
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 159 QPDSSTLPP-PWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRP 217
+P +T PP P P P+ + P AP PP + L P + W R P P
Sbjct: 564 RPPITTSPPVPQEPAPVPSP-PRAPTPPSTPVPL-PEKRRSILREPTFRWTSLTRELPPP 621
Query: 218 GEQVPPVPSP 227
PP P+P
Sbjct: 622 PPAPPPPPAP 631
>gi|167621456 kinase suppressor of ras 2 [Homo sapiens]
Length = 921
Score = 30.0 bits (66), Expect = 1.8
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 82 WMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCLRFV-QTNISRLLQETS----- 135
WM + TV G M L+ N ++ KC + PP L + + + +RL++ S
Sbjct: 391 WMSQTCTVCGKGMLFGLKCKNCKLKCHNKCTKEAPPCHLLIIHRGDPARLVRTESVPCDI 450
Query: 136 EQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSP----RPLEATA--PTAPQPPL 186
+ P + + S+ L + + +P P+ P P T+ P++P PPL
Sbjct: 451 NNPLRKPPRYSDLHISQTLPKTNKINKDHIPVPYQPDSSSNPSSTTSSTPSSPAPPL 507
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 159 QPDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLL 197
+P ++ LP P +P +P PP LLLLLL + LL
Sbjct: 34 EPRAAPLPLLAMAPPPACRSPMSPPPPPLLLLLLSLALL 72
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 158 CQPDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRP 217
C D + P P L A AP+A PP L+ G L+A+A + RTP P
Sbjct: 352 CDTDDFVMVPAQFPGDLVAEAPSAKPPPDSLMC---SGSSLVASAGL----ESHGRTPSP 404
Query: 218 GEQVPPVPSP 227
PSP
Sbjct: 405 SPPCSSSPSP 414
>gi|21361699 sphingosine kinase 2 [Homo sapiens]
Length = 654
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 175 EATAPTAPQPPLLLLLLLPVGLLLLAAAWC 204
E T P+PP LLLL+ P G LA WC
Sbjct: 171 EITPDLLPRPPRLLLLVNPFGGRGLAWQWC 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,122,831
Number of Sequences: 37866
Number of extensions: 573602
Number of successful extensions: 4201
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 243
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.