Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SEMA3F Sequence: fasta or formatted (785aa) NCBI GI: 188497703
Description:

semaphorin 3F

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         66           2
 C cysteine            2.7         21           2
 D aspartate           6.0         47           2
 E glutamate           4.7         37           2
 F phenylalanine       3.9         31           3
 G glycine             6.5         51           2
 H histidine           2.7         21           2
 I isoleucine          3.1         24           2
 K lysine              3.4         27           2
 L leucine             8.4         66           3
 M methionine          2.0         16           1
 N asparagine          3.3         26           2
 P proline             8.0         63           4
 Q glutamine           5.1         40           2
 R arginine            8.4         66           3
 S serine              5.6         44           2
 T threonine           5.6         44           2
 V valine              6.6         52           2
 W tryptophan          1.4         11           1
 Y tyrosine            4.1         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 3F 
SEMA3C                0.495   semaphorin 3C 
SEMA3A                0.442   semaphorin 3A precursor 
SEMA3D                0.418   semaphorin 3D 
SEMA3B                0.405   semaphorin 3B isoform 1 precursor 
SEMA3B                0.402   semaphorin 3B isoform 2 precursor 
SEMA3E                0.397   semaphorin 3E 
SEMA3G                0.372   semaphorin sem2 
SEMA4C                0.179   semaphorin 4C 
SEMA4D                0.178   semaphorin 4D isoform 1 
SEMA4G                0.170   semaphorin 4G 
SEMA4D                0.170   semaphorin 4D isoform 2 
SEMA6D                0.167   semaphorin 6D isoform 2 precursor 
SEMA4B                0.167   semaphorin 4B precursor 
SEMA4B                0.167   semaphorin 4B precursor 
SEMA6D                0.167   semaphorin 6D isoform 5 precursor 
SEMA6D                0.167   semaphorin 6D isoform 4 precursor 
SEMA6D                0.167   semaphorin 6D isoform 3 precursor 
SEMA4A                0.165   semaphorin B 
SEMA6D                0.163   semaphorin 6D isoform 1 precursor 
SEMA6A                0.152   sema domain, transmembrane domain (TM), and cytoplas...
SEMA5B                0.147   semaphorin 5B isoform 1 
SEMA6D                0.142   semaphorin 6D isoform 6 precursor 
SEMA4F                0.141   semaphorin W 
SEMA6C                0.134   semaphorin Y 
SEMA5A                0.132   semaphorin 5A 
SEMA6B                0.132   semaphorin 6B precursor 
SEMA7A                0.107   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.107   semaphorin 7A isoform 2 preproprotein 
SEMA7A                0.105   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press