Guide to the Human Genome
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Search of human proteins with 38348402

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38348402 transmembrane protein 110 [Homo sapiens]
         (294 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38348402 transmembrane protein 110 [Homo sapiens]                  592   e-169
gi|168229156 NFKB activating protein [Homo sapiens]                    35   0.10 
gi|110349719 titin isoform N2-A [Homo sapiens]                         33   0.30 
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho...    32   0.87 
gi|47419936 SFRS protein kinase 1 [Homo sapiens]                       31   1.1  
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap...    30   1.9  
gi|94538366 transient receptor potential cation channel, subfami...    30   1.9  
gi|17149828 NMDA receptor regulated 1 [Homo sapiens]                   30   1.9  
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H...    30   2.5  
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...    30   2.5  
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...    30   2.5  
gi|42560244 peptidylprolyl isomerase G [Homo sapiens]                  30   2.5  
gi|148762958 D4, zinc and double PHD fingers, family 3 [Homo sap...    30   2.5  
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    30   3.3  
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    30   3.3  
gi|56090620 NFKB activating protein-like [Homo sapiens]                30   3.3  
gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo s...    29   5.7  
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    29   5.7  
gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]    29   5.7  
gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]    29   5.7  
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo...    28   7.4  
gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo ...    28   7.4  
gi|155030242 WD repeat domain 60 [Homo sapiens]                        28   7.4  
gi|208022661 hypothetical protein LOC57701 [Homo sapiens]              28   7.4  
gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]    28   7.4  
gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]    28   7.4  
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]                   28   9.6  
gi|157266334 tubby like protein 1 [Homo sapiens]                       28   9.6  

>gi|38348402 transmembrane protein 110 [Homo sapiens]
          Length = 294

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/294 (100%), Positives = 294/294 (100%)

Query: 1   MQGPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREP 60
           MQGPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREP
Sbjct: 1   MQGPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREP 60

Query: 61  KHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYV 120
           KHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYV
Sbjct: 61  KHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSLYLINFLLDATVGMLLIYV 120

Query: 121 GVRAVSVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKK 180
           GVRAVSVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKK
Sbjct: 121 GVRAVSVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKK 180

Query: 181 VALLNPIENPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGS 240
           VALLNPIENPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGS
Sbjct: 181 VALLNPIENPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGS 240

Query: 241 KVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLKPVKKKKHRFGLPV 294
           KVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLKPVKKKKHRFGLPV
Sbjct: 241 KVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLKPVKKKKHRFGLPV 294


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 220 KGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTP 279
           K K  ++ +ER   +  +  SK ++++ +   +S+S      D E + SD +   R    
Sbjct: 182 KKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDS------DSETDSSDEDNKRRAKKA 235

Query: 280 LKPVKKKKHR 289
            K  KKKKHR
Sbjct: 236 KKKEKKKKHR 245


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 216  FLMRKGKTKAKLEERGANQDSRNGSKVRYRRAA--SHEESESEILISADDEMEESDVEED 273
            F+ +KG  +AKLE R    D+       YR  A   H E ES + +  D+  ++  +E D
Sbjct: 8502 FIHQKGD-EAKLEIR----DTTKTDSGLYRCVAFNEHGEIESNVNLQVDERKKQEKIEGD 8556

Query: 274  LRRLTPLKPVKKK 286
            LR +    P+ KK
Sbjct: 8557 LRAMLKKTPILKK 8569


>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
           sapiens]
          Length = 864

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESES---EILISADDEMEESDVEEDLR 275
           R+ + KAKLEE   + +     K + ++    EE  S   E LI    E  E+ +EE ++
Sbjct: 600 RRAQKKAKLEEERKHAERERQQKNQKKKRDEEEEEASGLKEELIPEKLERVENPLEEAVK 659

Query: 276 RLTPLK 281
            L PLK
Sbjct: 660 FLIPLK 665


>gi|47419936 SFRS protein kinase 1 [Homo sapiens]
          Length = 655

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 11/54 (20%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEES-----ESEILISADDEMEE 267
           RK +TKAK ++      ++  S+ ++R +A H ES     E EIL S DDE E+
Sbjct: 11  RKKRTKAKKDK------AQRKSETQHRGSAPHSESDLPEQEEEILGSDDDEQED 58


>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
           sapiens]
          Length = 2211

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 217 LMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEED 273
           L++K + KAKL+ +   +  R GS          E S SE   S ++EMEE + EE+
Sbjct: 926 LLKKERLKAKLQRK---KKKRKGSDEE-DEGEEEESSSSEESSSEEEEMEEEEEEEE 978


>gi|94538366 transient receptor potential cation channel, subfamily M,
            member 1 [Homo sapiens]
          Length = 1603

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/87 (22%), Positives = 40/87 (45%)

Query: 119  YVGVRAVSVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQW 178
            Y+G   V   V+   W       +G     G +V      ++ M++   ++ +VL+    
Sbjct: 923  YMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGV 982

Query: 179  KKVALLNPIENPDLKLAIVMLIVPFFV 205
             + A+L+P E P  KLA  +  +P+++
Sbjct: 983  ARQAILHPEEKPSWKLARNIFYMPYWM 1009



 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 208 LMFWVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEE 267
           LM W V   LM++ K    L +RG    ++     +  +A +HE SES+++     +++ 
Sbjct: 615 LMVWAV---LMKRQKMAVFLWQRGEESMAKALVACKLYKAMAHESSESDLVDDISQDLDN 671

Query: 268 S 268
           +
Sbjct: 672 N 672


>gi|17149828 NMDA receptor regulated 1 [Homo sapiens]
          Length = 866

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEES---ESEILISADDEMEESDVEEDLR 275
           R+ + KA++EE   N +     + + ++    +E      E LI       E+ +EE ++
Sbjct: 600 RRAQKKAQIEEEKKNAEKEKQQRNQKKKKDDDDEEIGGPKEELIPEKLAKVETPLEEAIK 659

Query: 276 RLTPLKPVKKKK 287
            LTPLK + K K
Sbjct: 660 FLTPLKNLVKNK 671


>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
           sapiens]
          Length = 1094

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEME-ESDVEEDLRRL 277
           R  K  +K + +  ++D    ++      +S++ES S    S+D E E E + E + RR+
Sbjct: 738 RTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDESSSIEDSSSDSESESEPESESESRRV 797

Query: 278 TPLKPVKKKKHR 289
           T  K  K K+ R
Sbjct: 798 TKEKEKKTKQDR 809


>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
           sapiens]
          Length = 1632

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 224 KAKLEERGANQDSRNGSKVRYRRAASHEESESE---ILISADDEMEESDVEEDLRRLTPL 280
           +A  +E G  +D +         AA     E E   +     DE +E + EE  R+ TP 
Sbjct: 287 QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPK 346

Query: 281 KPVKKKKHR 289
           +P +KK  R
Sbjct: 347 EPTEKKMAR 355


>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
           sapiens]
          Length = 1616

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 224 KAKLEERGANQDSRNGSKVRYRRAASHEESESE---ILISADDEMEESDVEEDLRRLTPL 280
           +A  +E G  +D +         AA     E E   +     DE +E + EE  R+ TP 
Sbjct: 271 QADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEEKRRKTTPK 330

Query: 281 KPVKKKKHR 289
           +P +KK  R
Sbjct: 331 EPTEKKMAR 339


>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
          Length = 754

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 222 KTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLK 281
           K+K K EE+  ++ S + S      ++S  +S S+   S+D    ES  EE  ++     
Sbjct: 180 KSKVKKEEKKRHKSSSSSSS-----SSSDSDSSSDSQSSSDSSDSESATEEKSKK----- 229

Query: 282 PVKKKKHR 289
             +KKKHR
Sbjct: 230 --RKKKHR 235


>gi|148762958 D4, zinc and double PHD fingers, family 3 [Homo
           sapiens]
          Length = 357

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 23/114 (20%)

Query: 178 WKKVALLNPIENPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSR 237
           W+K   L+P E+P L+L  +   V   +        D F       +A L          
Sbjct: 79  WRKKRRLHPPEDPKLRLLEIKPEVELPLKK------DGFTSESTTLEALL---------- 122

Query: 238 NGSKVRYRRAASHEESESEI--LISADDEMEESDVEEDLRRLTPLKPVKKKKHR 289
            G  V  +  A  EES  EI  ++  D+ +EE + EEDL      + + K+K+R
Sbjct: 123 RGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLE-----EDIPKRKNR 171


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 224  KAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEED 273
            KA+LEE   NQ S    K R RR    E+S SE   ++++E EE + EE+
Sbjct: 1371 KAELEE---NQRSYKQKKKR-RRIKVQEDSSSENKSNSEEEEEEKEEEEE 1416


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 224  KAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEED 273
            KA+LEE   NQ S    K R RR    E+S SE   ++++E EE + EE+
Sbjct: 1409 KAELEE---NQRSYKQKKKR-RRIKVQEDSSSENKSNSEEEEEEKEEEEE 1454


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 224 KAKLEERGANQDSR-NGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLTPLKP 282
           + K   R  N+  R N S  R  R  S  +S SE           SD ++D +R+   K 
Sbjct: 176 RKKKTSRSRNKKKRKNKSSKRKHRKYSDSDSNSE-------SDTNSDSDDDKKRVKAKKK 228

Query: 283 VKKKKHR 289
            KKKKH+
Sbjct: 229 KKKKKHK 235


>gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo
           sapiens]
          Length = 680

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 220 KGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADD----EMEESDVEEDL 274
           +G+ + +   RG N  SR GS+ R R   S  +  S  + + +     E++ESDVEED+
Sbjct: 570 RGRGRGRRGGRGQNSASRGGSQ-RGRAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDI 627


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 123

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLRRLT 278
           ++ K K K  E+   ++     + R R+    EE   E     ++E EE + EE+ +   
Sbjct: 40  KEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREE-----EEEEEEEEKEEEEKEEG 94

Query: 279 PLKPVKKKKHR 289
             +  KKK+ R
Sbjct: 95  RRRKKKKKRRR 105


>gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]
          Length = 247

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 250 HEESESEILISADDEMEESDVEEDLRRLTPLKPVKK 285
           +E+SE   +   DD+ E+ D+E++   L+P KP ++
Sbjct: 198 NEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRR 233


>gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]
          Length = 413

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 250 HEESESEILISADDEMEESDVEEDLRRLTPLKPVKK 285
           +E+SE   +   DD+ E+ D+E++   L+P KP ++
Sbjct: 364 NEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRR 399


>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
            sapiens]
          Length = 1483

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 237  RNGSKVRYRRAASHEESESEILISADDEMEESDVEEDLR----RLTPLKPVKKK 286
            RN     Y   ++ E+SE +     ++E EE + EED      RL P K ++ K
Sbjct: 1238 RNSRGRNYTEESASEDSEDDESDEEEEEEEEEEEEEDYEVAGLRLRPRKTIRGK 1291


>gi|239744397 PREDICTED: hypothetical protein LOC100130348 [Homo
           sapiens]
          Length = 153

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 119 YVGVRAVSVLVEWQQWESLR-FGEYGDP 145
           YV   A+++L EWQ+WE  R  GE  +P
Sbjct: 82  YVCFSALTILSEWQEWEGARGSGELWNP 109


>gi|155030242 WD repeat domain 60 [Homo sapiens]
          Length = 1066

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 219 RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEE--SDVEEDLRR 276
           RKG++ +K+     ++DS  G + R RR   + E + +   S D+ ++      E + R 
Sbjct: 159 RKGRSVSKVRSEEKDEDSERGDEDRERR---YRERKLQYGDSKDNPLKYWLYKEEGERRH 215

Query: 277 LTPLKPVKKKKHR 289
             P +P +  KHR
Sbjct: 216 RKPREPDRDNKHR 228


>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
          Length = 1334

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 9    SRGLPGGPPSTVASGAGRCES--GALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHE 63
            +R  PGGP     +G G+ +     +      F+Q LL  V    L  K +REPK E
Sbjct: 993  ARPRPGGPAPGPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPE 1049


>gi|194018478 TBC1 domain family, member 2B isoform a [Homo sapiens]
          Length = 963

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 245 RRAASHEESESEILISADDEMEESDVEEDLRRLTP 279
           RR   +   E E+L     ++EES V+E+ ++LTP
Sbjct: 244 RRTVFYTNEEWELLDPTPKDLEESIVQEEKKKLTP 278


>gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]
          Length = 914

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 245 RRAASHEESESEILISADDEMEESDVEEDLRRLTP 279
           RR   +   E E+L     ++EES V+E+ ++LTP
Sbjct: 244 RRTVFYTNEEWELLDPTPKDLEESIVQEEKKKLTP 278


>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
          Length = 330

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 3   GPAGNASRGLPGGPPSTVASGAGRCESGALMHSFGI 38
           G AG    G PGGP    A G G C  G L  S+ +
Sbjct: 69  GGAGAYGTGGPGGPGGP-AGGGGACSMGPLTGSYNV 103


>gi|157266334 tubby like protein 1 [Homo sapiens]
          Length = 542

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 246 RAASHEESESEILISADDEMEESDVEEDLRRLTPLKPVKKK 286
           RA   E+ E E     +DE EE++ +++   L P KP+++K
Sbjct: 110 RAPDAEDEEEEEEEDEEDEEEEAEEKKEKILLPPKKPLREK 150


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,267,016
Number of Sequences: 37866
Number of extensions: 488029
Number of successful extensions: 2126
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2092
Number of HSP's gapped (non-prelim): 49
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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