Guide to the Human Genome
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Name: PRKAR1B Sequence: fasta or formatted (381aa) NCBI GI: 38257139
Description:

protein kinase, cAMP-dependent, regulatory, type I, beta

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         23           2
 C cysteine            1.6          6           1
 D aspartate           5.8         22           2
 E glutamate          10.0         38           2
 F phenylalanine       3.4         13           1
 G glycine             6.3         24           2
 H histidine           1.6          6           1
 I isoleucine          5.5         21           2
 K lysine              6.3         24           1
 L leucine             8.4         32           3
 M methionine          1.6          6           1
 N asparagine          3.4         13           1
 P proline             5.2         20           2
 Q glutamine           3.4         13           2
 R arginine            7.3         28           4
 S serine              6.8         26           1
 T threonine           4.2         16           1
 V valine              8.9         34           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase, cAMP-dependent, regulatory, type I, ... 
PRKAR1A               0.821   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.821   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.821   cAMP-dependent protein kinase, regulatory subunit alp...
PRKAR2B               0.304   cAMP-dependent protein kinase, regulatory subunit be...
PRKAR2A               0.282   cAMP-dependent protein kinase, regulatory subunit alp...
PRKG1                 0.198   protein kinase, cGMP-dependent, type I isoform 1 [H...
PRKG1                 0.191   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
PRKG2                 0.167   protein kinase, cGMP-dependent, type II 
RAPGEF3               0.046   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.046   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.046   Rap guanine nucleotide exchange factor 3 isoform a ...
RAPGEF4               0.046   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.046   Rap guanine nucleotide exchange factor (GEF) 4 isof...
PNPLA7                0.041   patatin-like phospholipase domain containing 7 isof...
PNPLA7                0.041   patatin-like phospholipase domain containing 7 isof...
HCN2                  0.039   hyperpolarization activated cyclic nucleotide-gated...
PNPLA6                0.033   patatin-like phospholipase domain containing 6 [Hom...
CNBD1                 0.022   cyclic nucleotide binding domain containing 1 
CNGB3                 0.022   cyclic nucleotide gated channel beta 3 
HCN3                  0.020   hyperpolarization activated cyclic nucleotide-gated ...
CNGA3                 0.020   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.020   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
HCN4                  0.020   hyperpolarization activated cyclic nucleotide-gated p...
HCN1                  0.020   hyperpolarization activated cyclic nucleotide-gated...
CNGA4                 0.020   cyclic nucleotide gated channel alpha 4 
RAPGEF6               0.019   PDZ domain-containing guanine nucleotide exchange fa...
CNGB1                 0.019   cyclic nucleotide gated channel beta 1 isoform a [H...
C20orf152             0.018   hypothetical protein LOC140894 
CNGA1                 0.016   cyclic nucleotide gated channel alpha 1 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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