Guide to the Human Genome
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Name: C20orf152 Sequence: fasta or formatted (572aa) NCBI GI: 18201890
Description:

hypothetical protein LOC140894

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         29           2
 C cysteine            1.7         10           1
 D aspartate           4.9         28           2
 E glutamate           7.0         40           2
 F phenylalanine       6.1         35           2
 G glycine             4.4         25           1
 H histidine           1.9         11           1
 I isoleucine          7.7         44           3
 K lysine              8.7         50           2
 L leucine            10.7         61           3
 M methionine          3.7         21           1
 N asparagine          2.3         13           1
 P proline             5.2         30           2
 Q glutamine           5.4         31           2
 R arginine            6.6         38           3
 S serine              6.3         36           2
 T threonine           3.1         18           2
 V valine              4.2         24           2
 W tryptophan          1.7         10           1
 Y tyrosine            3.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC140894 
RAPGEF4               0.030   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.030   Rap guanine nucleotide exchange factor (GEF) 4 isof...
PRKG1                 0.030   protein kinase, cGMP-dependent, type I isoform 1 [H...
PRKG1                 0.030   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
RAPGEF3               0.029   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.029   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.029   Rap guanine nucleotide exchange factor 3 isoform a ...
PRKG2                 0.024   protein kinase, cGMP-dependent, type II 
CNBD1                 0.019   cyclic nucleotide binding domain containing 1 
RAPGEF6               0.017   PDZ domain-containing guanine nucleotide exchange fa...
LOC100133567          0.013   PREDICTED: similar to Rap guanine nucleotide exchan...
RAPGEF2               0.013   Rap guanine nucleotide exchange factor 2 
PRKAR1A               0.013   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.013   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.013   cAMP-dependent protein kinase, regulatory subunit alp...
CNGA2                 0.012   cyclic nucleotide gated channel alpha 2 
PRKAR1B               0.011   protein kinase, cAMP-dependent, regulatory, type I, ...
PRKAR2A               0.011   cAMP-dependent protein kinase, regulatory subunit alp...
CNGB1                 0.011   cyclic nucleotide gated channel beta 1 isoform a [H...
CNGA3                 0.007   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.007   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA1                 0.006   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.006   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 1...
CNGB3                 0.006   cyclic nucleotide gated channel beta 3 
HCN4                  0.005   hyperpolarization activated cyclic nucleotide-gated p...
LOC100292648          0.005   PREDICTED: similar to hCG2036828 
SIPA1L2               0.004   signal-induced proliferation-associated 1 like 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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