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Search of human proteins with 38201675
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38201675 syndecan 4 precursor [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38201675 syndecan 4 precursor [Homo sapiens] 390 e-109
gi|40548378 syndecan 2 precursor [Homo sapiens] 108 3e-24
gi|187960059 syndecan 3 [Homo sapiens] 71 5e-13
gi|55749480 syndecan 1 precursor [Homo sapiens] 66 2e-11
gi|29568086 syndecan 1 precursor [Homo sapiens] 66 2e-11
gi|5174613 nucleosome assembly protein 1-like 4 [Homo sapiens] 34 0.071
gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens] 33 0.21
gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens] 33 0.21
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens] 33 0.21
gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo sa... 32 0.27
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 32 0.46
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 32 0.46
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 32 0.46
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens] 32 0.46
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens] 32 0.46
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 32 0.46
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens] 32 0.46
gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens] 32 0.46
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens] 32 0.46
gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo ... 30 1.0
gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo ... 30 1.0
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 30 1.3
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 30 1.3
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 30 1.3
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 1.3
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 1.3
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 1.3
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 1.3
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 30 1.3
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 30 1.3
>gi|38201675 syndecan 4 precursor [Homo sapiens]
Length = 198
Score = 390 bits (1002), Expect = e-109
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFEL 60
MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFEL
Sbjct: 1 MAPARLFALLLFFVGGVAESIRETEVIDPQDLLEGRYFSGALPDDEDVVGPGQESDDFEL 60
Query: 61 SGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVE 120
SGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVE
Sbjct: 61 SGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENEVIPKRISPVE 120
Query: 121 ESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSY 180
ESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSY
Sbjct: 121 ESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSY 180
Query: 181 DLGKKPIYKKAPTNEFYA 198
DLGKKPIYKKAPTNEFYA
Sbjct: 181 DLGKKPIYKKAPTNEFYA 198
>gi|40548378 syndecan 2 precursor [Homo sapiens]
Length = 201
Score = 108 bits (270), Expect = 3e-24
Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 19/170 (11%)
Query: 39 SGALPDDED----VVGPGQESD--DFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPER 92
SG P D+D G G + D EL+ S L + + P+V + + N IP +
Sbjct: 41 SGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQ 100
Query: 93 AGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIV 152
S + E L ++E +++ P EE +V + S +F+RTEVLAA+I
Sbjct: 101 TKSPEETDKEKVHLSDSE---RKMDPAEEDTNVYTEKHSDS------LFKRTEVLAAVIA 151
Query: 153 GGIVGILFAVFLILLLMYRMKKKDEGSYDLG-KKP---IYKKAPTNEFYA 198
GG++G LFA+FLILLL+YRM+KKDEGSYDLG +KP Y+KAPT EFYA
Sbjct: 152 GGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA 201
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 71.2 bits (173), Expect = 5e-13
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 38 FSGALPDDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGS 97
F + D+ +V G S DFEL E+ P+ + +V + G+ +
Sbjct: 297 FLTTIRDEPEVPVSGGPSGDFELP--------EEETTQPDTANEVVAV-------GGAAA 341
Query: 98 QVPTEPKKLEENEVIPKRISPVEESEDVS-NKVSMSSTVQGSNIFERTEVLAALIVGGIV 156
+ + P L PK P D + + S ++ + +I ER EVL A+IVGG+V
Sbjct: 342 KASSPPGTL------PKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVV 395
Query: 157 GILFAVFLILLLMYRMKKKDEGSYDL-----GKKPIYKKAPTNEFYA 198
G LFA FL+ LL+YRMKKKDEGSY L K EFYA
Sbjct: 396 GALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 442
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 65.9 bits (159), Expect = 2e-11
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 87 NHIPERAGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEV 146
+ +P GSG Q T E V+ VE + V +T + +R EV
Sbjct: 198 SQLPAAEGSGEQDFTFETSGENTAVVA-----VEPDRRNQSPVDQGATGASQGLLDRKEV 252
Query: 147 LAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKK------PIYKKAPTNEFYA 198
L +I GG+VG++FAV L+ ++YRMKKKDEGSY L + K EFYA
Sbjct: 253 LGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 310
Score = 31.6 bits (70), Expect = 0.46
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 43 PDDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPE--------VVHPLVPLDNHIPERAG 94
P+D+D G G +SD+F SG+G L D+ S P P P + A
Sbjct: 31 PEDQD--GSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAA 88
Query: 95 SGSQVPTEPKKLEENEVIPKRISP 118
S S +P E V+ + P
Sbjct: 89 STSTLPAGEGPKEGEAVVLPEVEP 112
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 65.9 bits (159), Expect = 2e-11
Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 87 NHIPERAGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEV 146
+ +P GSG Q T E V+ VE + V +T + +R EV
Sbjct: 198 SQLPAAEGSGEQDFTFETSGENTAVVA-----VEPDRRNQSPVDQGATGASQGLLDRKEV 252
Query: 147 LAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKK------PIYKKAPTNEFYA 198
L +I GG+VG++FAV L+ ++YRMKKKDEGSY L + K EFYA
Sbjct: 253 LGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA 310
Score = 31.6 bits (70), Expect = 0.46
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 43 PDDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPE--------VVHPLVPLDNHIPERAG 94
P+D+D G G +SD+F SG+G L D+ S P P P + A
Sbjct: 31 PEDQD--GSGDDSDNFSGSGAGALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAA 88
Query: 95 SGSQVPTEPKKLEENEVIPKRISP 118
S S +P E V+ + P
Sbjct: 89 STSTLPAGEGPKEGEAVVLPEVEP 112
>gi|5174613 nucleosome assembly protein 1-like 4 [Homo sapiens]
Length = 375
Score = 34.3 bits (77), Expect = 0.071
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 37 YFSGALPDDEDVVGPGQESDDFELSGSGDLDDLEDSMIGPEV 78
YF+G +D+D G+E ++ EL G + +D +D+ I P+V
Sbjct: 334 YFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDAEINPKV 375
>gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
Length = 459
Score = 32.7 bits (73), Expect = 0.21
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
S + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 374 SEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNY 424
>gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]
Length = 432
Score = 32.7 bits (73), Expect = 0.21
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
S + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 347 SEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNY 397
>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
Length = 1061
Score = 32.7 bits (73), Expect = 0.21
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
S + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 976 SEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNY 1026
>gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo
sapiens]
Length = 775
Score = 32.3 bits (72), Expect = 0.27
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 90 PERAGSGSQVPTEPKKLEENEVIPKRISPVE---------ESEDVSNKVSMSSTVQGSNI 140
P R + + T P K+ + PK P++ ++E + + +T N+
Sbjct: 465 PPRNSNDLKNTTAPPKIAKGRA-PKFTQPLQPRSSNEFPAQTEQTTASPDIRNTTVTPNV 523
Query: 141 FERTEVLAALIVGGIVGILFAVFLILLLMYRM---KKKDEGSYDL 182
+ LAA++V +V +L + LIL+ + KKK EG+YDL
Sbjct: 524 -TKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDL 567
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 31.6 bits (70), Expect = 0.46
Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 93 AGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIV 152
+G SQ T + NE + + ++ S + ++ + G +E ++ ++++
Sbjct: 824 SGQPSQSTTTLVHVFVNESV-SNATAIDSQIARSLHIPLTQDIAGDPSYEISKQRLSIVI 882
Query: 153 GGIVGILFAVFLILLLMYR--MKKKDEGSYDLGKK 185
G + GI+ + +IL+++ + K++ Y+ GKK
Sbjct: 883 GVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKK 917
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 31.6 bits (70), Expect = 0.46
Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 93 AGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIV 152
+G SQ T + NE + + ++ S + ++ + G +E ++ ++++
Sbjct: 777 SGQPSQSTTTLVHVFVNESV-SNATAIDSQIARSLHIPLTQDIAGDPSYEISKQRLSIVI 835
Query: 153 GGIVGILFAVFLILLLMYR--MKKKDEGSYDLGKK 185
G + GI+ + +IL+++ + K++ Y+ GKK
Sbjct: 836 GVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKK 870
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 31.6 bits (70), Expect = 0.46
Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 93 AGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIV 152
+G SQ T + NE + + ++ S + ++ + G +E ++ ++++
Sbjct: 824 SGQPSQSTTTLVHVFVNESV-SNATAIDSQIARSLHIPLTQDIAGDPSYEISKQRLSIVI 882
Query: 153 GGIVGILFAVFLILLLMYR--MKKKDEGSYDLGKK 185
G + GI+ + +IL+++ + K++ Y+ GKK
Sbjct: 883 GVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKK 917
>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
Length = 1547
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 1461 AEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNY 1511
>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
Length = 442
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 356 AEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNY 406
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 138 SNIFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 1391 AEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNY 1441
>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
Length = 1712
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 140 IFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 1628 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDQSRNY 1676
>gi|21166382 neurexin 2 isoform beta precursor [Homo sapiens]
Length = 666
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 140 IFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 582 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDQSRNY 630
>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
Length = 1642
Score = 31.6 bits (70), Expect = 0.46
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 140 IFERTEVLAALIVGGIVGILFAVFLILLLMYRMKKKDEGSYDLGKKPIY 188
+ + ++VG + + ++L MY+ + +DEGSY + + Y
Sbjct: 1558 VIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDQSRNY 1606
>gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo
sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 90 PERAGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSS 133
P R G G+ ++E N +PK + E+E ++ +V++SS
Sbjct: 6 PRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSS 49
>gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo
sapiens]
Length = 482
Score = 30.4 bits (67), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 90 PERAGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSS 133
P R G G+ ++E N +PK + E+E ++ +V++SS
Sbjct: 6 PRRGGDGAAQAARKTRVEANSPLPKNSGSLNEAEALNPEVTLSS 49
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 30.0 bits (66), Expect = 1.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 75 GPEVVHPLVPLDNHIPERAGSGSQ-VPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSS 133
G V PL+P H PE S ++ +P P + EE E P + + V +V M
Sbjct: 1139 GAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEE------DPAMKPQSVLTRVKMFE 1192
Query: 134 TVQGSNIFERTEV 146
+ +++ + +V
Sbjct: 1193 NKRSASLETKKDV 1205
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 30.0 bits (66), Expect = 1.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 75 GPEVVHPLVPLDNHIPERAGSGSQ-VPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSS 133
G V PL+P H PE S ++ +P P + EE E P + + V +V M
Sbjct: 1219 GAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEE------DPAMKPQSVLTRVKMFE 1272
Query: 134 TVQGSNIFERTEV 146
+ +++ + +V
Sbjct: 1273 NKRSASLETKKDV 1285
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 151 IVGGIVGILFAVFLILLLMYRM--------------KKKDEGSYDLGKKPIYKKAPT 193
IV G+V + + L LLL++++ K+K +D G+ PIYK A T
Sbjct: 732 IVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVT 788
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 51 PGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENE 110
PGQ+ +GS D D ++++ P +PL + +GSG + + K+ EN
Sbjct: 165 PGQKKSK---NGSDDQDKKVETLMVPSKRQEALPLHQETKQESGSGKKKASSKKQKTENV 221
Query: 111 VIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGI 158
+ E + + + S + ++ EV+ L + GI
Sbjct: 222 FVD------EPLIHATTYIPLMDNADSSPVVDKREVIDLLKPDQVEGI 263
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 51 PGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENE 110
PGQ+ +GS D D ++++ P +PL + +GSG + + K+ EN
Sbjct: 165 PGQKKSK---NGSDDQDKKVETLMVPSKRQEALPLHQETKQESGSGKKKASSKKQKTENV 221
Query: 111 VIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGI 158
+ E + + + S + ++ EV+ L + GI
Sbjct: 222 FVD------EPLIHATTYIPLMDNADSSPVVDKREVIDLLKPDQVEGI 263
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 51 PGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENE 110
PGQ+ +GS D D ++++ P +PL + +GSG + + K+ EN
Sbjct: 165 PGQKKSK---NGSDDQDKKVETLMVPSKRQEALPLHQETKQESGSGKKKASSKKQKTENV 221
Query: 111 VIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGI 158
+ E + + + S + ++ EV+ L + GI
Sbjct: 222 FVD------EPLIHATTYIPLMDNADSSPVVDKREVIDLLKPDQVEGI 263
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 51 PGQESDDFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPERAGSGSQVPTEPKKLEENE 110
PGQ+ +GS D D ++++ P +PL + +GSG + + K+ EN
Sbjct: 165 PGQKKSK---NGSDDQDKKVETLMVPSKRQEALPLHQETKQESGSGKKKASSKKQKTENV 221
Query: 111 VIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIVGGIVGI 158
+ E + + + S + ++ EV+ L + GI
Sbjct: 222 FVD------EPLIHATTYIPLMDNADSSPVVDKREVIDLLKPDQVEGI 263
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 151 IVGGIVGILFAVFLILLLMYRM--------------KKKDEGSYDLGKKPIYKKAPT 193
IV G+V + + L LLL++++ K+K +D G+ PIYK A T
Sbjct: 732 IVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENPIYKSAVT 788
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 30.0 bits (66), Expect = 1.3
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 22 RETEVIDPQD-----LLEGRYFSGALPDD-EDVVGPGQESDDFELSGSGDLDDLEDSMIG 75
RE + + P++ LLEG A P+D ED PG+E + G G + S
Sbjct: 120 REEDDVPPEEKRLRLLLEG---GSAQPEDGEDAPRPGREETGTQTGGDGKGAEFSTSFEQ 176
Query: 76 PEVVHPL 82
P HPL
Sbjct: 177 PRFSHPL 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,705,654
Number of Sequences: 37866
Number of extensions: 373561
Number of successful extensions: 1120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 68
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.