ITGB1 11479

Name: ITGB1	Sequence: fasta or formatted (798aa)		NCBI GI: 19743813
Description: integrin beta 1 isoform 1A precursor		Referenced in: Integrins Extracellular Matrix
Other entries for this name: alt prot [789aa] integrin beta 1 isoform 1B precursor alt prot [825aa] integrin beta 1 isoform 1C-1 precursor alt prot [801aa] integrin beta 1 isoform 1D precursor alt prot [819aa] integrin beta 1 isoform 1C-2 precursor alt mRNA [798aa] integrin beta 1 isoform 1A precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.8 30 1 C cysteine 7.3 58 2 D aspartate 5.3 42 2 E glutamate 7.9 63 2 F phenylalanine 3.6 29 1 G glycine 7.8 62 2 H histidine 1.3 10 1 I isoleucine 6.0 48 2 K lysine 7.1 57 3 L leucine 6.3 50 3 M methionine 1.9 15 1 N asparagine 7.3 58 2 P proline 4.4 35 2 Q glutamine 3.6 29 2 R arginine 3.6 29 2 S serine 7.4 59 2 T threonine 5.5 44 2 V valine 6.4 51 2 W tryptophan 0.8 6 1 Y tyrosine 2.9 23 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 integrin beta 1 isoform 1A precursor ITGB1 1.000 integrin beta 1 isoform 1A precursor ITGB1 0.987 integrin beta 1 isoform 1D precursor ITGB1 0.975 integrin beta 1 isoform 1C-1 precursor ITGB1 0.975 integrin beta 1 isoform 1B precursor ITGB1 0.975 integrin beta 1 isoform 1C-2 precursor ITGB2 0.425 integrin, beta 2 precursor ITGB2 0.425 integrin, beta 2 precursor ITGB7 0.409 integrin, beta 7 ITGB3 0.408 integrin beta chain, beta 3 precursor ITGB6 0.388 integrin, beta 6 ITGB5 0.378 integrin, beta 5 ITGB8 0.271 integrin, beta 8 precursor ITGB4 0.255 integrin beta 4 isoform 2 precursor ITGB4 0.255 integrin beta 4 isoform 1 precursor ITGB4 0.255 integrin beta 4 isoform 3 precursor ITGBL1 0.061 integrin, beta-like 1 (with EGF-like repeat domains) ... TNR 0.031 tenascin R TNXB 0.030 tenascin XB isoform 1 precursor ODZ3 0.030 odz, odd Oz/ten-m homolog 3 ODZ4 0.028 odz, odd Oz/ten-m homolog 4 NOTCH1 0.028 notch1 preproprotein ODZ2 0.028 odz, odd Oz/ten-m homolog 2 TNC 0.027 tenascin C precursor TNN 0.027 tenascin N NOTCH2 0.026 notch 2 preproprotein ODZ1 0.025 odz, odd Oz/ten-m homolog 1 isoform 3 ODZ1 0.025 odz, odd Oz/ten-m homolog 1 isoform 2 ODZ1 0.025 odz, odd Oz/ten-m homolog 1 isoform 1 LAMA1 0.021 laminin, alpha 1 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.