Guide to the Human Genome
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Name: ITGB1 Sequence: fasta or formatted (798aa) NCBI GI: 19743813
Description:

integrin beta 1 isoform 1A precursor

Referenced in:

Integrins
Extracellular Matrix

Other entries for this name:
alt prot [789aa] integrin beta 1 isoform 1B precursor
alt prot [825aa] integrin beta 1 isoform 1C-1 precursor
alt prot [801aa] integrin beta 1 isoform 1D precursor
alt prot [819aa] integrin beta 1 isoform 1C-2 precursor
alt mRNA [798aa] integrin beta 1 isoform 1A precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         30           1
 C cysteine            7.3         58           2
 D aspartate           5.3         42           2
 E glutamate           7.9         63           2
 F phenylalanine       3.6         29           1
 G glycine             7.8         62           2
 H histidine           1.3         10           1
 I isoleucine          6.0         48           2
 K lysine              7.1         57           3
 L leucine             6.3         50           3
 M methionine          1.9         15           1
 N asparagine          7.3         58           2
 P proline             4.4         35           2
 Q glutamine           3.6         29           2
 R arginine            3.6         29           2
 S serine              7.4         59           2
 T threonine           5.5         44           2
 V valine              6.4         51           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin beta 1 isoform 1A precursor 
ITGB1                 1.000   integrin beta 1 isoform 1A precursor 
ITGB1                 0.987   integrin beta 1 isoform 1D precursor 
ITGB1                 0.975   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.975   integrin beta 1 isoform 1B precursor 
ITGB1                 0.975   integrin beta 1 isoform 1C-2 precursor 
ITGB2                 0.425   integrin, beta 2 precursor 
ITGB2                 0.425   integrin, beta 2 precursor 
ITGB7                 0.409   integrin, beta 7 
ITGB3                 0.408   integrin beta chain, beta 3 precursor 
ITGB6                 0.388   integrin, beta 6 
ITGB5                 0.378   integrin, beta 5 
ITGB8                 0.271   integrin, beta 8 precursor 
ITGB4                 0.255   integrin beta 4 isoform 2 precursor 
ITGB4                 0.255   integrin beta 4 isoform 1 precursor 
ITGB4                 0.255   integrin beta 4 isoform 3 precursor 
ITGBL1                0.061   integrin, beta-like 1 (with EGF-like repeat domains) ...
TNR                   0.031   tenascin R 
TNXB                  0.030   tenascin XB isoform 1 precursor 
ODZ3                  0.030   odz, odd Oz/ten-m homolog 3 
ODZ4                  0.028   odz, odd Oz/ten-m homolog 4 
NOTCH1                0.028   notch1 preproprotein 
ODZ2                  0.028   odz, odd Oz/ten-m homolog 2 
TNC                   0.027   tenascin C precursor 
TNN                   0.027   tenascin N 
NOTCH2                0.026   notch 2 preproprotein 
ODZ1                  0.025   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.025   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ1                  0.025   odz, odd Oz/ten-m homolog 1 isoform 1 
LAMA1                 0.021   laminin, alpha 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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