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Search of human proteins with 38093645
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38093645 myelin protein zero-like 3 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38093645 myelin protein zero-like 3 [Homo sapiens] 474 e-134
gi|4505243 myelin protein zero [Homo sapiens] 104 6e-23
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 94 1e-19
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 94 1e-19
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 90 2e-18
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 89 2e-18
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 65 7e-11
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 62 6e-10
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 62 6e-10
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 57 1e-08
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 55 4e-08
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 55 7e-08
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 50 1e-06
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 50 1e-06
gi|21361429 V-set and immunoglobulin domain containing 2 [Homo s... 49 4e-06
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens] 47 1e-05
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 44 9e-05
gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens] 42 3e-04
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 40 0.002
gi|11386199 poliovirus receptor-related 3 [Homo sapiens] 40 0.002
gi|4506805 sodium channel, voltage-gated, type I, beta isoform a... 37 0.019
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 36 0.025
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 36 0.025
gi|39930610 sodium channel, voltage-gated, type I, beta isoform ... 36 0.033
gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens] 36 0.033
gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens] 36 0.033
gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens] 36 0.033
gi|52317156 carcinoembryonic antigen-related cell adhesion molec... 36 0.033
gi|27477039 inducible T-cell co-stimulator ligand [Homo sapiens] 35 0.043
gi|148612793 carcinoembryonic antigen-related cell adhesion mole... 35 0.073
>gi|38093645 myelin protein zero-like 3 [Homo sapiens]
Length = 235
Score = 474 bits (1220), Expect = e-134
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MQQRGAAGSRGCALFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDV 60
MQQRGAAGSRGCALFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDV
Sbjct: 1 MQQRGAAGSRGCALFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDV 60
Query: 61 TDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTI 120
TDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTI
Sbjct: 61 TDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTI 120
Query: 121 KDNGTFSCAVKNPPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVR 180
KDNGTFSCAVKNPPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVR
Sbjct: 121 KDNGTFSCAVKNPPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVR 180
Query: 181 MGRKAAGLKKRSRSGYKKSSIEVSDDTDQEEEEACMARLCVRCAECLDSDYEETY 235
MGRKAAGLKKRSRSGYKKSSIEVSDDTDQEEEEACMARLCVRCAECLDSDYEETY
Sbjct: 181 MGRKAAGLKKRSRSGYKKSSIEVSDDTDQEEEEACMARLCVRCAECLDSDYEETY 235
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 104 bits (260), Expect = 6e-23
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 6 AAGSRGCALFPLLGVLFFQGVYI--VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDK 63
A G+ + P+L VL F + + ++ + D V G VG ++ L C+F S+ V+D
Sbjct: 12 APGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHCSFWSSEWVSDD 71
Query: 64 LTIDWTYRPPSSSHTVSIFHYQSFQ-YPTTAGTFRDRISWVGNVYKGDASISISNPTIKD 122
++ W Y+P +SIFHY Q Y GTF++RI WVG+ D SI I N D
Sbjct: 72 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSD 131
Query: 123 NGTFSCAVKNPPDVHHNIPMTELTVTER---GFGTMLSS-------VALLSILVF 167
NGTF+C VKNPPD+ L V E+ +G +L + V LL +L+F
Sbjct: 132 NGTFTCDVKNPPDIVGKTSQVTLYVFEKVPTRYGVVLGAVIGGVLGVVLLLLLLF 186
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 93.6 bits (231), Expect = 1e-19
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 4/201 (1%)
Query: 13 ALFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRP 72
A+ LLG+ ++ + ++EI + G +LKCTF S + V D LT+ W +RP
Sbjct: 9 AVLLLLGIQL-TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRP 67
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
+F+Y + +G F+DR+SW GN + DASI + DNGT++C VKN
Sbjct: 68 LDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQVKN 127
Query: 133 PPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVRMGRKAAGLKKRS 192
PPDV I L+V S + L++ + A+++ +++V + + K+ +
Sbjct: 128 PPDVDGVIGEIRLSVVHT---VRFSEIHFLALAIGSACALMIIIVIVVVLFQHYRKKRWA 184
Query: 193 RSGYKKSSIEVSDDTDQEEEE 213
+K I+ ++ +E+
Sbjct: 185 ERAHKVVEIKSKEEERLNQEK 205
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 93.6 bits (231), Expect = 1e-19
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 4/201 (1%)
Query: 13 ALFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRP 72
A+ LLG+ ++ + ++EI + G +LKCTF S + V D LT+ W +RP
Sbjct: 9 AVLLLLGIQL-TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRP 67
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
+F+Y + +G F+DR+SW GN + DASI + DNGT++C VKN
Sbjct: 68 LDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQVKN 127
Query: 133 PPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVRMGRKAAGLKKRS 192
PPDV I L+V S + L++ + A+++ +++V + + K+ +
Sbjct: 128 PPDVDGVIGEIRLSVVHT---VRFSEIHFLALAIGSACALMIIIVIVVVLFQHYRKKRWA 184
Query: 193 RSGYKKSSIEVSDDTDQEEEE 213
+K I+ ++ +E+
Sbjct: 185 ERAHKVVEIKSKEEERLNQEK 205
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 89.7 bits (221), Expect = 2e-18
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 29 VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQ 88
V +LE+ + G + KL C FKSTS ++ W+++P + TVS FHY Q
Sbjct: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQ 94
Query: 89 -YPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPDVHHNIPMTELTV 147
Y F+DRISW G++ K DASI+I N NGT+ C VKNPPD+ L V
Sbjct: 95 VYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYV 154
Query: 148 TERGFGTMLSSVALLSILVFVPSAVVVAL-LLVRMGRKAAGLKKRSRSGYKKSSIEVS 204
E+ V + ++V + +AVV+ L LL+ M +K S+ Y S S
Sbjct: 155 VEK----ENLPVFPVWVVVGIVTAVVLGLTLLISMILAVLYRRKNSKRDYTGCSTSES 208
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 89.4 bits (220), Expect = 2e-18
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Query: 29 VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQ 88
V +LE+ + G + KL C FKSTS ++ W+++P + TVS FHY Q
Sbjct: 35 VSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQ 94
Query: 89 -YPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPDVHHNIPMTELTV 147
Y F+DRISW G++ K DASI+I N NGT+ C VKNPPD+ L V
Sbjct: 95 VYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYV 154
Query: 148 TERGFGTMLSSVALLSILVFVPSAVVVAL-LLVRMGRKAAGLKKRSRSGY 196
E+ V + ++V + +AVV+ L LL+ M +K S+ Y
Sbjct: 155 VEK----ENLPVFPVWVVVGIVTAVVLGLTLLISMILAVLYRRKNSKRDY 200
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 64.7 bits (156), Expect = 7e-11
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 18/203 (8%)
Query: 15 FPLLGV-LFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDK-LTIDWTYRP 72
F L G+ LFF V S+E+ A + G +L CTF S V K +++WTY+
Sbjct: 12 FSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQE 71
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
++ ++ F+DR+ + GN K D S+ + N +D G ++C + N
Sbjct: 72 CNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMN 131
Query: 133 PPDVHHNIPMTELTVTERGFGTMLSSVALL---SILVFVPSAVVVALLLVRMGRKAAGLK 189
PPD H L V S+VA++ S+ F+ + V++ L++V+ R+
Sbjct: 132 PPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFL-AVVILVLMVVKCVRR----- 185
Query: 190 KRSRSGYKKSSIEVSDDTDQEEE 212
KK +DD EEE
Sbjct: 186 -------KKEQKLSTDDLKTEEE 201
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 61.6 bits (148), Expect = 6e-10
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 14 LFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRP 72
LFPL ++ V + F + + + G +KL+C + +V ++W YRP
Sbjct: 7 LFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP 66
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
+ I+ Y++ + F+ R+ W G+ D SI++ N T+ D+G ++C V
Sbjct: 67 EGGKDFL-IYEYRN-GHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSR 124
Query: 133 PPDVHHNIPMTELT------VTERG---FGTMLSSVALLSILVFVPSAVVVALL-LVRMG 182
+ + P + T VTE F +++S + + +LVF+ +++ ++ R
Sbjct: 125 EFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKV 184
Query: 183 RKAAGLKKRSRSGYKKSSIEVSDDTDQEEEE 213
KA + + S Y E +++ EE
Sbjct: 185 SKAEEAAQENASDYLAIPSENKENSAVPVEE 215
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 61.6 bits (148), Expect = 6e-10
Identities = 48/211 (22%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 14 LFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRP 72
LFPL ++ V + F + + + G +KL+C + +V ++W YRP
Sbjct: 7 LFPLASLVLIYWVSVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFYRP 66
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
+ I+ Y++ + F+ R+ W G+ D SI++ N T+ D+G ++C V
Sbjct: 67 EGGKDFL-IYEYRN-GHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSR 124
Query: 133 PPDVHHNIPMTELT------VTERG---FGTMLSSVALLSILVFVPSAVVVALL-LVRMG 182
+ + P + T VTE F +++S + + +LVF+ +++ ++ R
Sbjct: 125 EFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLLIEMIYCYRKV 184
Query: 183 RKAAGLKKRSRSGYKKSSIEVSDDTDQEEEE 213
KA + + S Y E +++ EE
Sbjct: 185 SKAEEAAQENASDYLAIPSENKENSAVPVEE 215
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 57.4 bits (137), Expect = 1e-08
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 37 DAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTF 96
D V VG + L C + +T ++L+I W++ +SI+ Q Q G F
Sbjct: 28 DGFVNVTVGSNVTLICIYTTTVASREQLSIQWSFFHKKEMEPISIYFSQGGQ-AVAIGQF 86
Query: 97 RDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPD 135
+DRI+ G+ G+ASI+IS+ D+G + C V NPPD
Sbjct: 87 KDRIT--GSNDPGNASITISHMQPADSGIYICDVNNPPD 123
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 55.5 bits (132), Expect = 4e-08
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 16 PLLGVLFFQGVYIVFSLEI-RADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPS 74
PL +L + SLE+ + ++ G+ L CTF +TS L + W P S
Sbjct: 7 PLAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTF-TTSAALINLNVIWMVTPLS 65
Query: 75 SSHTVS-IFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNP 133
+++ + YQ Q A F R+ + G + + SI I+N + D GT+ C V N
Sbjct: 66 NANQPEQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNL 125
Query: 134 PDV-HHNIPMTELTV 147
PD+ NI +T LTV
Sbjct: 126 PDIGGRNIGVTGLTV 140
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 54.7 bits (130), Expect = 7e-08
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 23 FQGVYIVFSLEI-RADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVS- 80
F + SLE+ + ++ G+ L CTF +TS L + W P S+++
Sbjct: 13 FSRTGVAASLEVSESPGSIQVARGQPAVLPCTF-TTSAALINLNVIWMVTPLSNANQPEQ 71
Query: 81 IFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPDV-HHN 139
+ YQ Q A F R+ + G + + SI I+N + D GT+ C V N PD+ N
Sbjct: 72 VILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPDIGGRN 131
Query: 140 IPMTELTV 147
I +T LTV
Sbjct: 132 IGVTGLTV 139
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 50.4 bits (119), Expect = 1e-06
Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 43 YVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQ----SFQYPTTAGTFRD 98
+VG I++ C F+ST +V ++W + + + +Y S +Y + G F++
Sbjct: 136 HVGGLIQMGCVFQST-EVKHVTKVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQSWGHFQN 194
Query: 99 RISWVGNVYKGDASISISNPTIKDNGTFSCAV-------KNPPDVHHNIPMTELTVTERG 151
R++ VG++++ D SI + D G ++C++ K +H + VT
Sbjct: 195 RVNLVGDIFRNDGSIMLQGVRESDGGNYTCSIHLGNLVFKKTIVLHVSPEEPRTLVTPAA 254
Query: 152 FGTMLSSVALLSILVFVPSAVVVAL-LLVRMGRKAAGLKKRSRS-----GYKKSSIEVSD 205
++ L I+V + A ++ L +L+ + +K G K S KK++ E+ +
Sbjct: 255 LRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKTNPEIKE 314
Score = 45.8 bits (107), Expect = 3e-05
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 43 YVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISW 102
+VG+ + C F+ST D IDWT P + + +Y S G F++R+
Sbjct: 23 HVGDSALMGCVFQSTEDKCI-FKIDWTLSPGEHAKDEYVLYYYS-NLSVPIGRFQNRVHL 80
Query: 103 VGNVYKGDASISISNPTIKDNGTFSCAVK 131
+G++ D S+ + + D GT+ C ++
Sbjct: 81 MGDILCNDGSLLLQDVQEADQGTYICEIR 109
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 50.4 bits (119), Expect = 1e-06
Identities = 40/180 (22%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 43 YVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQ----SFQYPTTAGTFRD 98
+VG I++ C F+ST +V ++W + + + +Y S +Y + G F++
Sbjct: 146 HVGGLIQMGCVFQST-EVKHVTKVEWIFSGRRAKEEIVFRYYHKLRMSVEYSQSWGHFQN 204
Query: 99 RISWVGNVYKGDASISISNPTIKDNGTFSCAV-------KNPPDVHHNIPMTELTVTERG 151
R++ VG++++ D SI + D G ++C++ K +H + VT
Sbjct: 205 RVNLVGDIFRNDGSIMLQGVRESDGGNYTCSIHLGNLVFKKTIVLHVSPEEPRTLVTPAA 264
Query: 152 FGTMLSSVALLSILVFVPSAVVVAL-LLVRMGRKAAGLKKRSRS-----GYKKSSIEVSD 205
++ L I+V + A ++ L +L+ + +K G K S KK++ E+ +
Sbjct: 265 LRPLVLGGNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKTNPEIKE 324
Score = 45.8 bits (107), Expect = 3e-05
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 43 YVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISW 102
+VG+ + C F+ST D IDWT P + + +Y S G F++R+
Sbjct: 33 HVGDSALMGCVFQSTEDKCI-FKIDWTLSPGEHAKDEYVLYYYS-NLSVPIGRFQNRVHL 90
Query: 103 VGNVYKGDASISISNPTIKDNGTFSCAVK 131
+G++ D S+ + + D GT+ C ++
Sbjct: 91 MGDILCNDGSLLLQDVQEADQGTYICEIR 119
>gi|21361429 V-set and immunoglobulin domain containing 2 [Homo
sapiens]
Length = 327
Score = 48.9 bits (115), Expect = 4e-06
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 17 LLGVLFFQGVYIVFSLEIRADAH-VRGYVGEKIKLKCTFKSTSDVTDKLTIDWTY----R 71
LLG L G+ ++E++ + +G+ +L CT+ ++ V D ++W++ +
Sbjct: 13 LLGFLCLSGL----AVEVKVPTEPLSTPLGKTAELTCTYSTS--VGDSFALEWSFVQPGK 66
Query: 72 PPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYK-GDASISISNPTIKDNGTFSCAV 130
P S SH + ++ YPT G+ R+S + N G A++ +++ D GT+ C V
Sbjct: 67 PISESHPI-LYFTNGHLYPT--GSKSKRVSLLQNPPTVGVATLKLTDVHPSDTGTYLCQV 123
Query: 131 KNPPDVHHN-IPMTELTV 147
NPPD + N + + LTV
Sbjct: 124 NNPPDFYTNGLGLINLTV 141
>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
Length = 319
Score = 47.4 bits (111), Expect = 1e-05
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 14 LFPLLGVLFFQGVYI-VFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRP 72
++P+L L V + S+E D +R G+ + L CT+ +++ + L I W
Sbjct: 5 MWPVLWTLCAVRVTVDAISVETPQDV-LRASQGKSVTLPCTYHTSTSSREGL-IQWDKLL 62
Query: 73 PSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKN 132
+ + V I+ + + Y +++R+S N + DASI+I T+ DNGT+ C+V
Sbjct: 63 LTHTERVVIWPFSNKNY-IHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVSL 121
Query: 133 PPDVHHN 139
D+ N
Sbjct: 122 MSDLEGN 128
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 44.3 bits (103), Expect = 9e-05
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 45 GEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHT--VSIFHYQSFQYPTTAGTFRDRISW 102
GE L C F + + L I+W P + V I + Y + R+ +
Sbjct: 34 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 93
Query: 103 VGNVYK-GDASISISNPTIKDNGTFSCAVKNPPDV 136
N K GDASI+++N + D GT+ C VK P V
Sbjct: 94 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGV 128
>gi|13376115 adipocyte-specific adhesion molecule [Homo sapiens]
Length = 373
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 46 EKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGN 105
EK+ L C + D L I+W + V I + Y + R+++ N
Sbjct: 29 EKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVITYSSRHVYNNLTEEQKGRVAFASN 88
Query: 106 VYKGDASISISNPTIKDNGTFSCAVKN 132
GDAS+ I D G ++C VKN
Sbjct: 89 FLAGDASLQIEPLKPSDEGRYTCKVKN 115
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 12/200 (6%)
Query: 17 LLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSS 76
LLG LF V + + + + G +I L CTF S D L WTY S +
Sbjct: 19 LLG-LFLLPVTLSLEVSVGKATDIYAVNGTEILLPCTFSSCFGFED-LHFRWTYNS-SDA 75
Query: 77 HTVSIFHYQSFQYPTTAGTFRD--RISWVGNVYK--GDASISISNPTIKDNGTFSCAVKN 132
+ I + T +D RI+ VG+ + + SI + + D G ++C VKN
Sbjct: 76 FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKN 135
Query: 133 PPD--VHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLVRMGRKAAGLKK 190
P + + H+ + L V +R + + L IL V + + +L++ + + + K
Sbjct: 136 PKENNLQHHATIF-LQVVDR--LEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILK 192
Query: 191 RSRSGYKKSSIEVSDDTDQE 210
++R K+ + S + + E
Sbjct: 193 KTREKKKECLVSSSGNDNTE 212
>gi|11386199 poliovirus receptor-related 3 [Homo sapiens]
Length = 549
Score = 39.7 bits (91), Expect = 0.002
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 14 LFPLLGVLFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPP 73
LFPLL F + + I + HV G+ + LKC + +T I W
Sbjct: 43 LFPLL---LFSRLCGALAGPIIVEPHVTAVWGKNVSLKCLIEVNETITQ---ISWEKIHG 96
Query: 74 SSSHTVSIFHYQ-SFQYPTTAGTFRDRISWVGNVYKGDASISISNPTIKDNGTFSC 128
SS TV++ H Q F + G ++ R+ + N DA+I++ N D+G + C
Sbjct: 97 KSSQTVAVHHPQYGF---SVQGEYQGRVLF-KNYSLNDATITLHNIGFSDSGKYIC 148
>gi|4506805 sodium channel, voltage-gated, type I, beta isoform a
[Homo sapiens]
Length = 218
Score = 36.6 bits (83), Expect = 0.019
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 34 IRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTT 92
+ D+ G K+ C + K S+ + +WT+R + V I Y++
Sbjct: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
Query: 93 AG-TFRDRISWVGNVYKG-----DASISISNPTIKDNGTFSCAVKNP---PDVHHN---I 140
F R+ W G+ +G D SI I+N T +G + C V + HN +
Sbjct: 82 EDERFEGRVVWNGS--RGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVV 139
Query: 141 PMTELTVTERGFGTMLSSVALLSILVFVPSAVVVALLLV 179
+ V ++ M S V+ + + V + VV+ + LV
Sbjct: 140 KKIHIEVVDKANRDMASIVSEIMMYVLI---VVLTIWLV 175
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 36.2 bits (82), Expect = 0.025
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 48 IKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIF---HYQSFQYPTTAGT--FRDRISW 102
I+L C+ KS + + W PS + I H +F+Y T A R R+ +
Sbjct: 717 IQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHNSAFEYGTYAEEEGLRARLQF 776
Query: 103 VGNVYKGDASISISNPTIKDNGTFSCAVK 131
+V G S+++ + D+G++ C V+
Sbjct: 777 ERHVSGGLFSLTVQRAEVSDSGSYYCHVE 805
Score = 35.0 bits (79), Expect = 0.056
Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 47 KIKLKCTFKSTSDVTDKLTIDW-TYRP--PSSSHTVSIFHYQSFQYPTTAG--TFRDRIS 101
+++L+C + + +T +L ++W ++P P + +F Y A + R+
Sbjct: 853 QVQLECVVLNRTSITSQLMVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLH 912
Query: 102 WVGNVYKGDASISISNPTIKDNGTFSCAVKN--PPDVHHNIPMTELTVTERGFGTMLSSV 159
+ + G + I N ++D+GT+SC V+ P E T + T++
Sbjct: 913 -LESPSPGVYRLFIQNVAVQDSGTYSCHVEEWLPSPSGMWYKRAEDTAGQTAL-TVMRPD 970
Query: 160 ALLSILVFVPSAVVVALLLVRMGRK------------AAGLKKRSRSGYKKSSIEVSDDT 207
A L + VP+A V ++ A R+++G K+SS + +
Sbjct: 971 ASLQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGKRSSPGLEEQE 1030
Query: 208 DQEEEE 213
++ EEE
Sbjct: 1031 EEREEE 1036
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 36.2 bits (82), Expect = 0.025
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 48 IKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVSIF---HYQSFQYPTTAGT--FRDRISW 102
I+L C+ KS + + W PS + I H +F+Y T A R R+ +
Sbjct: 697 IQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHNSAFEYGTYAEEEGLRARLQF 756
Query: 103 VGNVYKGDASISISNPTIKDNGTFSCAVK 131
+V G S+++ + D+G++ C V+
Sbjct: 757 ERHVSGGLFSLTVQRAEVSDSGSYYCHVE 785
Score = 35.0 bits (79), Expect = 0.056
Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 47 KIKLKCTFKSTSDVTDKLTIDW-TYRP--PSSSHTVSIFHYQSFQYPTTAG--TFRDRIS 101
+++L+C + + +T +L ++W ++P P + +F Y A + R+
Sbjct: 833 QVQLECVVLNRTSITSQLMVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLH 892
Query: 102 WVGNVYKGDASISISNPTIKDNGTFSCAVKN--PPDVHHNIPMTELTVTERGFGTMLSSV 159
+ + G + I N ++D+GT+SC V+ P E T + T++
Sbjct: 893 -LESPSPGVYRLFIQNVAVQDSGTYSCHVEEWLPSPSGMWYKRAEDTAGQTAL-TVMRPD 950
Query: 160 ALLSILVFVPSAVVVALLLVRMGRK------------AAGLKKRSRSGYKKSSIEVSDDT 207
A L + VP+A V ++ A R+++G K+SS + +
Sbjct: 951 ASLQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGKRSSPGLEEQE 1010
Query: 208 DQEEEE 213
++ EEE
Sbjct: 1011 EEREEE 1016
>gi|39930610 sodium channel, voltage-gated, type I, beta isoform b
[Homo sapiens]
Length = 268
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 34 IRADAHVRGYVGEKIKLKC-TFKSTSDVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTT 92
+ D+ G K+ C + K S+ + +WT+R + V I Y++
Sbjct: 22 VEVDSETEAVYGMTFKILCISCKRRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLE 81
Query: 93 AG-TFRDRISWVGNVYKG-----DASISISNPTIKDNGTFSCAV 130
F R+ W G+ +G D SI I+N T +G + C V
Sbjct: 82 EDERFEGRVVWNGS--RGTKDLQDLSIFITNVTYNHSGDYECHV 123
>gi|42560233 poliovirus receptor-related 1 isoform 3 [Homo sapiens]
Length = 352
Score = 35.8 bits (81), Expect = 0.033
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 1 MQQRGAAGSRGCALFPLLGV--LFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTS 58
M + G AG+ G LG+ F GV+ S ++ + + G++G + L C+F +
Sbjct: 1 MARMGLAGAAGRWWGLALGLTAFFLPGVH---SQVVQVNDSMYGFIGTDVVLHCSFANPL 57
Query: 59 DVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNP 118
+ W S V+I Y + +R+R+ ++ + D +I +S
Sbjct: 58 PSVKITQVTWQKSTNGSKQNVAI--YNPSMGVSVLAPYRERVEFLRPSFT-DGTIRLSRL 114
Query: 119 TIKDNGTFSC 128
++D G + C
Sbjct: 115 ELEDEGVYIC 124
>gi|42560231 poliovirus receptor-related 1 isoform 2 [Homo sapiens]
Length = 458
Score = 35.8 bits (81), Expect = 0.033
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 1 MQQRGAAGSRGCALFPLLGV--LFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTS 58
M + G AG+ G LG+ F GV+ S ++ + + G++G + L C+F +
Sbjct: 1 MARMGLAGAAGRWWGLALGLTAFFLPGVH---SQVVQVNDSMYGFIGTDVVLHCSFANPL 57
Query: 59 DVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNP 118
+ W S V+I Y + +R+R+ ++ + D +I +S
Sbjct: 58 PSVKITQVTWQKSTNGSKQNVAI--YNPSMGVSVLAPYRERVEFLRPSFT-DGTIRLSRL 114
Query: 119 TIKDNGTFSC 128
++D G + C
Sbjct: 115 ELEDEGVYIC 124
>gi|42560237 poliovirus receptor-related 1 isoform 1 [Homo sapiens]
Length = 517
Score = 35.8 bits (81), Expect = 0.033
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 1 MQQRGAAGSRGCALFPLLGV--LFFQGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTS 58
M + G AG+ G LG+ F GV+ S ++ + + G++G + L C+F +
Sbjct: 1 MARMGLAGAAGRWWGLALGLTAFFLPGVH---SQVVQVNDSMYGFIGTDVVLHCSFANPL 57
Query: 59 DVTDKLTIDWTYRPPSSSHTVSIFHYQSFQYPTTAGTFRDRISWVGNVYKGDASISISNP 118
+ W S V+I Y + +R+R+ ++ + D +I +S
Sbjct: 58 PSVKITQVTWQKSTNGSKQNVAI--YNPSMGVSVLAPYRERVEFLRPSFT-DGTIRLSRL 114
Query: 119 TIKDNGTFSC 128
++D G + C
Sbjct: 115 ELEDEGVYIC 124
>gi|52317156 carcinoembryonic antigen-related cell adhesion molecule
isoform 2 [Homo sapiens]
Length = 292
Score = 35.8 bits (81), Expect = 0.033
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 35 RADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVS-IFHYQSFQYPTTA 93
+A H+R Y E + S++ VT+K ++ T ++ + IF+ Q Q
Sbjct: 133 QASHHLRVY--ESVAQPSIQASSTTVTEKGSVVLTCHTNNTGTSFQWIFNNQRLQV---- 186
Query: 94 GTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPDVHHNIPMTELTVTERGFG 153
T R ++SW +V ++I +D G + C V NP + + P+ +LTV
Sbjct: 187 -TKRMKLSWFNHV------LTIDPIRQEDAGEYQCEVSNPVSSNRSDPL-KLTVKYDNTL 238
Query: 154 TMLSSVALLSILVFVPSAVVVALLLVRMGR 183
+L V + S+LV +A+V LLL + GR
Sbjct: 239 GILIGVLVGSLLV---AALVCFLLLRKTGR 265
>gi|27477039 inducible T-cell co-stimulator ligand [Homo sapiens]
Length = 302
Score = 35.4 bits (80), Expect = 0.043
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 26 VYIVFSLEIRADAH---VRGYVGEKIKLKCTFKSTS--DVTDKLTIDWTYRPPSSSHTVS 80
++++FS +RAD VR VG ++L C S D+ D + Y S S TV
Sbjct: 9 LFLLFS-SLRADTQEKEVRAMVGSDVELSCACPEGSRFDLNDV----YVYWQTSESKTVV 63
Query: 81 IFHY-QSFQYPTTAGTFRDR-ISWVGNVYKGDASISISNPTIKDNGTFSCAV 130
+H Q+ +R+R + + +GD S+ + N T +D F C V
Sbjct: 64 TYHIPQNSSLENVDSRYRNRALMSPAGMLRGDFSLRLFNVTPQDEQKFHCLV 115
>gi|148612793 carcinoembryonic antigen-related cell adhesion
molecule isoform 1 [Homo sapiens]
Length = 293
Score = 34.7 bits (78), Expect = 0.073
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 35 RADAHVRGYVGEKIKLKCTFKSTSDVTDKLTIDWTYRPPSSSHTVS-IFHYQSFQYPTTA 93
+A H+R Y E + S++ VT+K ++ T ++ + IF+ Q Q
Sbjct: 133 QASHHLRVY--ESVAQPSIQASSTTVTEKGSVVLTCHTNNTGTSFQWIFNNQRLQV---- 186
Query: 94 GTFRDRISWVGNVYKGDASISISNPTIKDNGTFSCAVKNPPDVHHNIPMTELTVTERGFG 153
T R ++SW +V ++I +D G + C V NP + + P+ ++
Sbjct: 187 -TKRMKLSWFNHV------LTIDPIRQEDAGEYQCEVSNPVSSNRSDPLKLTVKSDDNTL 239
Query: 154 TMLSSVALLSILVFVPSAVVVALLLVRMGR 183
+L V + S+LV +A+V LLL + GR
Sbjct: 240 GILIGVLVGSLLV---AALVCFLLLRKTGR 266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,907,421
Number of Sequences: 37866
Number of extensions: 371919
Number of successful extensions: 1424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 119
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.