Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 34303937
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34303937 RNA binding motif protein, Y-linked, family 1,
member F [Homo sapiens]
(496 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 1053 0.0
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 1053 0.0
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 1043 0.0
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 1042 0.0
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 1039 0.0
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 1038 0.0
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 350 2e-96
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 338 9e-93
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 338 9e-93
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 251 1e-66
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 179 7e-45
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 164 2e-40
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 164 2e-40
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 102 8e-22
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 87 5e-17
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 70 4e-12
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 65 1e-10
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 65 1e-10
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 65 1e-10
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 65 1e-10
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 65 1e-10
gi|57864582 hornerin [Homo sapiens] 64 2e-10
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 62 1e-09
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 62 2e-09
gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens] 62 2e-09
gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens] 62 2e-09
gi|9558733 transformer-2 alpha [Homo sapiens] 61 2e-09
gi|148612890 serine-arginine repressor protein [Homo sapiens] 61 3e-09
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 60 3e-09
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 60 3e-09
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 1053 bits (2723), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 1053 bits (2723), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 1043 bits (2696), Expect = 0.0
Identities = 492/496 (99%), Positives = 492/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 1042 bits (2695), Expect = 0.0
Identities = 492/496 (99%), Positives = 492/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 1039 bits (2687), Expect = 0.0
Identities = 491/496 (98%), Positives = 491/496 (98%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 1038 bits (2684), Expect = 0.0
Identities = 490/496 (98%), Positives = 491/496 (98%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGT+HGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 350 bits (897), Expect = 2e-96
Identities = 201/373 (53%), Positives = 244/373 (65%), Gaps = 21/373 (5%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+SG RR PP R+R P LR RG SGGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
Query: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRD----YGHSRRDESYS 290
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD YG+SR
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298
Query: 291 RGYRNHRSSRETREYAPPSRGH-GYRDYGHSRRHESYSRG-------YRNHPSSRETRDY 342
++ S +Y+ G+ G RD S R + YS G R P S E R Y
Sbjct: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGY 357
Query: 343 APPHRDYAYRDYG 355
PP Y+ G
Sbjct: 358 PPPRDSYSSSSRG 370
Score = 178 bits (451), Expect = 1e-44
Identities = 126/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
Query: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PVSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
Query: 462 RVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
R P PR++Y SSS A G G SRS++G SRY
Sbjct: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 338 bits (866), Expect = 9e-93
Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R PP R+R P + RG SGGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
Query: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
Query: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
Query: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
Query: 414 GGS 416
GGS
Sbjct: 377 GGS 379
Score = 165 bits (418), Expect = 8e-41
Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
Query: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
Query: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
P R++Y SSS A G G SRS++G SRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 338 bits (866), Expect = 9e-93
Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R PP R+R P + RG SGGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
Query: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
Query: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
Query: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
Query: 414 GGS 416
GGS
Sbjct: 377 GGS 379
Score = 165 bits (418), Expect = 8e-41
Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
Query: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
Query: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
P R++Y SSS A G G SRS++G SRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 251 bits (641), Expect = 1e-66
Identities = 173/373 (46%), Positives = 211/373 (56%), Gaps = 35/373 (9%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK AA+DMNG SL GKAIKV QA KP+F+S R PP SR R LR RG GG
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
Query: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178
R PS G DDGGYT D + SR +P+KRGP R GPPPK++APS ARS+ M
Sbjct: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
Query: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237
+ + R+ Y PPRR + R+ + R +GY++ DG + +E R +AP
Sbjct: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
Query: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284
Y +RD GHS+ RD+ RGY R+ R+ RDY SRG + YG R
Sbjct: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
Query: 285 -RDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342
SY G R E R Y+P + G Y S R + YSRG H R R
Sbjct: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
Query: 343 A-------PPHRD 348
+ PP RD
Sbjct: 351 SLSMERGCPPQRD 363
Score = 105 bits (261), Expect = 1e-22
Identities = 90/258 (34%), Positives = 115/258 (44%), Gaps = 28/258 (10%)
Query: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288
PSRG D G++ + D SR + R PP + A R G R +
Sbjct: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
Query: 289 YSRGYRNHRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346
+ R+ S RE PP R G RD G+S R SR YR E R +AP
Sbjct: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
Query: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
+Y +RDYGHSS D+ RGYS DGYG RD+ +HLS S+R+ + YG GA P
Sbjct: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
Query: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456
RG SYGG + AYS RD Y S+ D + R V R D+
Sbjct: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
Query: 457 PPSLGRVLPDPREAYGSS 474
S+ R P R++Y S
Sbjct: 351 SLSMERGCPPQRDSYSRS 368
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 179 bits (453), Expect = 7e-45
Identities = 166/479 (34%), Positives = 211/479 (44%), Gaps = 61/479 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
M+EAD P KLFIGGLN +T+EK LKA FGK+G I +V L+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK AA+DMNG L GKAI V Q KP+F+S R PP S S S S R GG+
Sbjct: 61 DAKAAARDMNGKYLDGKAIMVAQTIKPAFKS-SRWVPPTPG---SGSRSRFSHRTRGGGS 116
Query: 120 RGWLPSHEGHLDDG-GYTPDLKMSYSRGLIPVKRGPSSRS-GGPPPKKSAPSAVARS-NS 176
P +G DDG GY + R +P KRGP R PP K++ PS++A S
Sbjct: 117 SPQRPPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGC 176
Query: 177 WMGSQGPMSQRRENY-GVPPR------------RATISSWRNDRMSTRHDGYATNDGNH- 222
M + P ++ Y G+ PR R++++ M + DG
Sbjct: 177 GMRGKAPTVSGQDGYSGLQPRRWAGPPHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSG 236
Query: 223 -------PSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGH 275
P C++ D+ P R Y SR Y H S + R +
Sbjct: 237 PRVREPLPPCRDPGDFVPALRDY--------------SRRYYGHSSVPDYRPLRGDGNQN 282
Query: 276 AYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPS 335
YR H D YR S A P G YG R+E Y + S
Sbjct: 283 GYRGRDHEYTDHPSKGSYREPLKSYGGPCGAAPVWGTP-PSYGGGCRYEEYQGNSPDACS 341
Query: 336 SRETRDYAPPHRDYAY-RDY---GHSSWDEHSSRGYSYHDGYGEA------LGRDHSEHL 385
+ + P AY RD+ +S SS GYS D YGE GR H
Sbjct: 342 EGRSSEALPVVLPDAYSRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCYEEYRGRSPDAHS 401
Query: 386 SGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRD----RYGRSWESYSSCGD 440
G + + YG SH G Y G + A S R GRS ++YS D
Sbjct: 402 GGRN--SSSNSYGQSHHY-GGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHD 457
Score = 57.0 bits (136), Expect = 4e-08
Identities = 121/467 (25%), Positives = 164/467 (35%), Gaps = 77/467 (16%)
Query: 60 DAKNAAKDMNGTS-LHGKAIKVEQAKKPSFQSG-GRRRPPASSRNRSPSGSLRSARGSSG 117
DA + D +G S +G + E+ + + G R P A S S +S R G
Sbjct: 648 DAYSGGHDSSGQSNCYGGGGRYEEYRGRLLDANSGGRSPDAYSGGHDSSS--QSNRYGGG 705
Query: 118 GTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSW 177
G H + GG +PD +YSRG S GG A S+ +++
Sbjct: 706 GRYEEYRGHSLDANSGGRSPD---TYSRG--HDSSSQSDHYGGGGRSLDANSSGRLPDAY 760
Query: 178 MGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN--DGNHPSCQETRDYAPPS 235
G S R YG R +R + G + N G H S P
Sbjct: 761 SGGHDS-SSRSHRYGGGGR---YEEYRGRSLDANSGGRSPNAYSGGHNSSSRND---PCR 813
Query: 236 RGYAYRDN-GHS---NRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSR 291
G Y +N GHS N HS Y R S + Y R H Y GH
Sbjct: 814 GGGRYEENRGHSLDANSGGHSPNAYSGGRDS-SSNSY---DRSHRYGGGGH--------- 860
Query: 292 GYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAY 351
Y +R R + SRG + E+YSRG + +S D+ R Y
Sbjct: 861 -YEEYRG----RSHDTHSRGRSPDAHSGDHYTEAYSRGRDSFSNSYGRSDHY--GRGGCY 913
Query: 352 RDY------------GHSSWDEHSSRGYSYHDG--YGEALGRDHSEHLSGSSYRDALQRY 397
+Y G +S + R + Y G Y E G H G +++ Y
Sbjct: 914 EEYQGRSPNAYGGGRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGRD--SSIKSY 971
Query: 398 GTSHGAPPARGPRMSYGGSTCHAYSNTRDR----YGRSWESYSSCGDFHYCDREHVCRKD 453
G S G Y GS AYS DR YGRS D + R+ V R D
Sbjct: 972 GLS-DRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRS--------DRYSRGRDRVGRPD 1022
Query: 454 QRNPPSLGRVLPDPREAYGSSSYVASIVDGG---ESRSEKGDS-SRY 496
+ P + P ++Y S + GG R E+G+ SRY
Sbjct: 1023 RGLPLPMETGSPPLHDSYSRSG--CRVPRGGGRQGGRFERGEGRSRY 1067
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 164 bits (415), Expect = 2e-40
Identities = 91/133 (68%), Positives = 101/133 (75%), Gaps = 3/133 (2%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
M EAD GK FIGGLN ETN+K L+AVFGK+G I EV L+KD T+KSRGFAFITFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+S GRR PP R+R P LR RG SGGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
Query: 120 RGWLPSHEGHLDD 132
R PS GH+DD
Sbjct: 120 RE-PPSRGGHMDD 131
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 164 bits (415), Expect = 2e-40
Identities = 91/133 (68%), Positives = 101/133 (75%), Gaps = 3/133 (2%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
M EAD GK FIGGLN ETN+K L+AVFGK+G I EV L+KD T+KSRGFAFITFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+S GRR PP R+R P LR RG SGGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
Query: 120 RGWLPSHEGHLDD 132
R PS GH+DD
Sbjct: 120 RE-PPSRGGHMDD 131
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 102 bits (254), Expect = 8e-22
Identities = 78/217 (35%), Positives = 107/217 (49%), Gaps = 48/217 (22%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGW 122
+A MNG S+ G+ I+V+QA K SS NRS R RG S G RG+
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK-------------SSDNRS-----RGYRGGSAGGRGF 103
Query: 123 LPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQG 182
G RG GG +RS + GS+
Sbjct: 104 FRGGRG-----------------------RGRGFSRGGGDRGYGGNRFESRSGGYGGSRD 140
Query: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATND 219
S R ++ G R++ S+R+ +D YAT++
Sbjct: 141 YYSSRSQSGGYSD-RSSGGSYRDS-----YDSYATHN 171
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 86.7 bits (213), Expect = 5e-17
Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 67 DMNGTSLHGKAIKVEQAKKPS-------FQSGGRRRPPASSRNRSPSGSLR---SARGSS 116
MNG SL G+ I+V+ A K + F + GR R + GS R S G
Sbjct: 66 AMNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGY 125
Query: 117 GGTRGWLPSHEGHLDDGGY 135
G G + G + GGY
Sbjct: 126 GYGYGRSRDYNGR-NQGGY 143
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 70.1 bits (170), Expect = 4e-12
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKDM 68
L + GL+ T E+ L+ VF K+GPI++V ++ D+ S+ SRGFAF+ FEN DAK A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 69 NGTSLHGKAIKVEQA--KKPSFQSGG---RRRPPASSRNR------------SPSGSLRS 111
NG L G+ I+V+ + K+P + G R SSR R RS
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
Query: 112 ARGSSGGTRGW 122
RG GG GW
Sbjct: 240 YRGGGGGGGGW 250
Score = 35.8 bits (81), Expect = 0.092
Identities = 70/285 (24%), Positives = 102/285 (35%), Gaps = 35/285 (12%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLI 148
Q+ G R ++SR+ S GS +SAR + +R S E + S SR
Sbjct: 7 QNYGERESRSASRSGSAHGSGKSARHTPARSR----SKEDSRRSRSKSRSRSESRSRSRR 62
Query: 149 PVKRGPS-SRSGGPPPKKSAPSAVARS--NSWMGSQGPMSQRRENYGV---PPRRATISS 202
+R + SRS ++S + +R S PMS RR + G P +
Sbjct: 63 SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122
Query: 203 WRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR-----GYAYRDNGHSNRDEHSSRGYR 257
+ +T D P + Y SR + Y +N ++
Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182
Query: 258 NHRSSRETRDYAPPSRGHAYRD--------YGHSRRDESYSRGYRNHRSSRE--TREYAP 307
R D++ R H YG SRR + Y RGY R+ +R Y
Sbjct: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRG 242
Query: 308 PSRGHG------YRDYGHSRRHES--YSRGYRNHPSSRETRDYAP 344
G G RD + RR S YSRG + S +R Y+P
Sbjct: 243 GGGGGGGWRAAQDRDQIYRRRSPSPYYSRG--GYRSRSRSRSYSP 285
Score = 30.0 bits (66), Expect = 5.1
Identities = 40/121 (33%), Positives = 50/121 (41%), Gaps = 31/121 (25%)
Query: 242 DNGHSNRDEHSSRGYRN----HRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHR 297
D+G N E SR H S + R P+R + D SRR S SR R+
Sbjct: 3 DSGEQNYGERESRSASRSGSAHGSGKSARH--TPARSRSKED---SRRSRSKSRS-RSES 56
Query: 298 SSRETREYAPPSRGHGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGH 356
SR R SRRH + SR R+H SR +R Y+ RDY R + H
Sbjct: 57 RSRSRRS---------------SRRHYTRSRSRSRSHRRSR-SRSYS---RDYR-RRHSH 96
Query: 357 S 357
S
Sbjct: 97 S 97
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 65.5 bits (158), Expect = 1e-10
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L + L T+ L+ VF K+G + +V + +DR T +SRGFAF+ F + DA++A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 69 NGTSLHGKAIKVEQAK--KPSFQSGGRRRPPA--------SSRNRSPSGSLRSARGSSGG 118
+G L G+ ++V+ A+ +P RR PP R+RSP RS S
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR 135
Query: 119 TRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS 176
+R S S SR + +S+S KS S+V+RS S
Sbjct: 136 SRSRSRSR------------YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 65.1 bits (157), Expect = 1e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
++I + +++ LK +FGK GP V ++ D + KS+GF F++FE DA+ A +MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 70 GTSLHGKAIKVEQAKK 85
G L+GK I V +A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L++G L+ + E ML F GPI + + +D T +S G+A++ F+ PADA+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 NGTSLHGKAIKVEQAKK-PSFQSGG 92
N + GK +++ +++ PS + G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 39.7 bits (91), Expect = 0.006
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
G +FI L++ + K L F G I ++ D S+G+ F+ FE A+ A +
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
Query: 68 MNGTSLHGKAIKVEQAK 84
MNG L+ + + V + K
Sbjct: 158 MNGMLLNDRKVFVGRFK 174
Score = 38.9 bits (89), Expect = 0.011
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
L++ L+ +++ L+ F G I+ ++ + +S+GF F+ F +P +A A +MN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 70 GTSLHGKAIKVEQAKK 85
G + K + V A++
Sbjct: 355 GRIVATKPLYVALAQR 370
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 65.1 bits (157), Expect = 1e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
++I + +++ LK +FGK GP V ++ D + KS+GF F++FE DA+ A +MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 70 GTSLHGKAIKVEQAKK 85
G L+GK I V +A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L++G L+ + E ML F GPI + + +D TS S +A++ F++ DA++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 69 NGTSLHGKAIKVEQAKK-PSFQSGG 92
N + GK +++ +++ PS + G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 43.5 bits (101), Expect = 4e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
G +F+ L++ N K L G I ++ D S+G+ F+ FE A+ A K
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKK 157
Query: 68 MNGTSLHGKAIKVEQAK 84
MNG L+G+ + V Q K
Sbjct: 158 MNGMLLNGRKVFVGQFK 174
Score = 40.4 bits (93), Expect = 0.004
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
L++ L+ +++ L+ F G I+ ++ + +S+GF F+ F +P +A A +MN
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 70 GTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGW----LPS 125
G + K + V A++ R+ ++ S+R+ G+ +P
Sbjct: 355 GRIVATKPLYVALAQRKE-----ERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQ 409
Query: 126 HEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAV 171
+ H Y P +++ R P R +++ P P ++ PSA+
Sbjct: 410 TQNH---AAYYPPSQIARLR---PSPRW-TAQGARPHPFQNKPSAI 448
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 65.1 bits (157), Expect = 1e-10
Identities = 87/352 (24%), Positives = 128/352 (36%), Gaps = 30/352 (8%)
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATIS-SWRNDRMS 209
+ PS R+ P ++S S++ R + + S R+N+ P R+ S S RN
Sbjct: 1558 RHNPSWRNHRSPSERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSERSWRSPSQRNHCSP 1617
Query: 210 TRHDGYATND-GNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDY 268
++ ++ G H Q + RG + R + + H S R+HRSS E R
Sbjct: 1618 PERSCHSLSERGLHSPSQRSH------RGPSQRRHHSPSERSHRSPSERSHRSSSERRHR 1671
Query: 269 APPSRGH---AYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGH---GYRDYGHSRR 322
+P R H + R + S R+HR E R ++P R H R +
Sbjct: 1672 SPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSE 1731
Query: 323 HESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHS 382
+S R+H S E R ++P R H S E S S + R HS
Sbjct: 1732 RSHHSPSERSHHSPSERRHHSPSER-------SHCSPSERSHCSPSERRHRSPSERRHHS 1784
Query: 383 EHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFH 442
S S+ +R SH +P R R S + H+ R S+ S H
Sbjct: 1785 P--SEKSHHSPSER---SHHSPSER-RRHSPLERSRHSLLERSHRSPSERRSHRSFERSH 1838
Query: 443 --YCDREH-VCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDGGESRSEKG 491
+R H K +P R P R + SS RS G
Sbjct: 1839 RRISERSHSPSEKSHLSPLERSRCSPSERRGHSSSGKTCHSPSERSHRSPSG 1890
Score = 57.0 bits (136), Expect = 4e-08
Identities = 86/329 (26%), Positives = 121/329 (36%), Gaps = 46/329 (13%)
Query: 158 SGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRAT-----ISSWRNDRMSTRH 212
S G P + + +RS SQ +N P R + R RH
Sbjct: 1470 SVGQPLRTVQKDSSSRSKKNFYRNETSSQESKNLSTPGTRVQARGRILPGSPVKRTWHRH 1529
Query: 213 --DGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAP 270
D + NHPS R RG + R + + H S R+ RSS E R ++P
Sbjct: 1530 LKDKLTHKEHNHPSFYRERT----PRGPSERTRHNPSWRNHRSPSERSQRSSLERRHHSP 1585
Query: 271 PSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRG-HGYRDYG-HS-------- 320
R H SR++ S S R+ RS + +PP R H + G HS
Sbjct: 1586 SQRSHC----SPSRKNHS-SPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRG 1640
Query: 321 ---RRHESYSR------GYRNHPSSRETRDYAPPHRDY-AYRDYGHSSWDEHSSRGYSYH 370
RRH S S R+H SS E R +P R + + H S E R S
Sbjct: 1641 PSQRRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQR 1700
Query: 371 DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGR 430
G + R HS S S+R +R SH +P R H + R +
Sbjct: 1701 SHRGPSERRHHSP--SKRSHRSPARR---SHRSPSERSHHSP--SERSHHSPSERRHHSP 1753
Query: 431 SWESYSSCGDFHYC---DREHVCRKDQRN 456
S S+ S + +C +R H ++R+
Sbjct: 1754 SERSHCSPSERSHCSPSERRHRSPSERRH 1782
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 65.1 bits (157), Expect = 1e-10
Identities = 91/330 (27%), Positives = 131/330 (39%), Gaps = 70/330 (21%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKS-RGFAFITFENPADAKNAAKDM 68
L + L T+ L+ VF K+G + +V + ++ +K+ RGFAF+ F + DA++A M
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEG 128
+G L G+ ++V+ A+ GRR P SR P G +RG G R
Sbjct: 76 DGAELDGRELRVQVARY------GRRDLP-RSRQGEPRG---RSRGGGYGRR-------- 117
Query: 129 HLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRR 188
SY R +R SRS GP +S + R + + S+ P S+
Sbjct: 118 -----------SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRY--SRSPYSRS- 163
Query: 189 ENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNR 248
P R+ S R R Y G+H S S GY+ N +R
Sbjct: 164 -----PYSRSRYSRSPYSRSRYRESRYG---GSHYS----------SSGYS---NSRYSR 202
Query: 249 DEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPP 308
HSSR + SS +R + A R + S SR RSS TR +PP
Sbjct: 203 -YHSSRSHSKSGSSTSSRSASTSKSSSARRS-----KSSSVSRSRSRSRSSSMTR--SPP 254
Query: 309 SRGHGYRDYGHSRRHESYSRGYRNHPSSRE 338
R+ +S SR R S E
Sbjct: 255 RVS--------KRKSKSRSRSKRPPKSPEE 276
Score = 35.8 bits (81), Expect = 0.092
Identities = 56/204 (27%), Positives = 75/204 (36%), Gaps = 19/204 (9%)
Query: 236 RGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSR---G 292
RG+A+ H RD + + + + R+ + RD SR+ E R G
Sbjct: 55 RGFAFV-RFHDRRDAQDAEAAMDG-AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGG 112
Query: 293 YRNHRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDYAPPHRD-YA 350
RS R P R H R G S R S SR YR SR +P R Y+
Sbjct: 113 GYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSR-YRGSRYSRSPYSRSPYSRSRYS 171
Query: 351 YRDYGHSSWDE-------HSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Y S + E +SS GYS R HS+ S +S R A TS +
Sbjct: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSA----STSKSS 227
Query: 404 PPARGPRMSYGGSTCHAYSNTRDR 427
R S S + S++ R
Sbjct: 228 SARRSKSSSVSRSRSRSRSSSMTR 251
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 64.3 bits (155), Expect = 2e-10
Identities = 87/363 (23%), Positives = 126/363 (34%), Gaps = 66/363 (18%)
Query: 100 SRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSG 159
S++ S SG S++G G T G S H G + SY + +SR
Sbjct: 362 SKHGSGSGH-SSSQGQHGSTSGQASSSGQH----GSSSRQSSSYGQ------HESASRHS 410
Query: 160 GPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATND 219
+ S+ S + + GS S +G R++ S GY++
Sbjct: 411 SGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSG-----PYVSGSGYSSGF 465
Query: 220 GNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAY-- 277
G+H S E S GY +G + H G R+ +SSR R + +Y
Sbjct: 466 GHHESSSEH------SSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQ 519
Query: 278 ------RDYGHSR------RDESYSRGYRNHRSSRETREYAPPSRGHGYRD--------- 316
+ GHSR + S SRG R+ SR++ Y P G G
Sbjct: 520 HGSGSRQSLGHSRHGSGSGQSPSPSRG-RHESGSRQSSSYGPHGYGSGRSSSRGPYESGS 578
Query: 317 -----YGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHD 371
GH S GY H SS ++ H + SS +H
Sbjct: 579 GHSSGLGHQESRSGQSSGYGQHGSS---SGHSSTHGQHGSTSGQSSSCGQH--------- 626
Query: 372 GYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRS 431
G H +H SGSS + G+ G P+RG +G H+ S + G
Sbjct: 627 GATSGQSSSHGQHGSGSSQSSRYGQQGSGSGQSPSRG---RHGSDFGHSSSYGQHGSGSG 683
Query: 432 WES 434
W S
Sbjct: 684 WSS 686
Score = 63.5 bits (153), Expect = 4e-10
Identities = 95/402 (23%), Positives = 141/402 (35%), Gaps = 72/402 (17%)
Query: 92 GRRRPPASSRNRSPSGSLRSAR-GSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ G G GW S + G++ L SR
Sbjct: 1942 GSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2001
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 2002 GYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 2050
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHS-----SRGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 2051 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPGLGESSGFGHH 2110
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNHRSSRETREYA---------- 306
SS ++ Y+ G + YG H R SRG R+ SS + Y
Sbjct: 2111 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSRYGQHGSGSRQSS 2170
Query: 307 -----------PPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH--------- 346
PSRG GHS H + G SSR + H
Sbjct: 2171 GHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGSG-SGRSSSRGPYESRSGHSSVFGQHES 2229
Query: 347 ---RDYAYRDYGHS-----SWDEHSSRG--YSYHDGYGEALGR--DHSEHLSGSSYRDAL 394
AY +G S +H S S D G + G+ H +H SGSS +
Sbjct: 2230 GSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSY 2289
Query: 395 QRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYS 436
+ G+ G P+RG +G + H+ S + G W S S
Sbjct: 2290 GQQGSGSGQSPSRG---RHGSGSGHSSSYGQHGSGSGWSSSS 2328
Score = 63.2 bits (152), Expect = 5e-10
Identities = 96/406 (23%), Positives = 142/406 (34%), Gaps = 80/406 (19%)
Query: 92 GRRRPPASSRNRSPSGSLRSARGSSGGT-RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ S G+ GW S + ++ L SR
Sbjct: 1472 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHSSGLGHRESRSGQSS 1531
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 1532 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 1580
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHSS-----RGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 1581 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHH 1640
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNHRSSRETREYAP--------- 307
SS ++ Y+ G + YG H R SRG R+ SSR + Y
Sbjct: 1641 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSRSSSRYGQHGSGSRQSS 1700
Query: 308 ------------PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYG 355
PSRG GHS H + G SSR + H +
Sbjct: 1701 GHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSG-SGRSSSRGPYESRSGHSSVFGQ--- 1756
Query: 356 HSSWDEHSSRGYSYH-----------------------DGYGEALGRD--HSEHLSGSSY 390
H S HSS YS H D G + G+ H +H SGSS
Sbjct: 1757 HESGSGHSS-AYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQ 1815
Query: 391 RDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYS 436
+ + G+ G P+RG +G + H+ S + G W S S
Sbjct: 1816 SSSYGQQGSGSGQSPSRG---RHGSGSGHSSSYGQHGSGSGWSSSS 1858
Score = 60.5 bits (145), Expect = 3e-09
Identities = 92/394 (23%), Positives = 125/394 (31%), Gaps = 56/394 (14%)
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRS-ARGSSGGTRGWLPSHE 127
+G S G+ + G +S R SGS S +RG G G SH
Sbjct: 2140 SGQSSRGERHGSSSGSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSHG 2199
Query: 128 GHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
H G S SRG + G SS G SA ++ S G Q
Sbjct: 2200 QHGSGSG------RSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQH 2253
Query: 188 RENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSN 247
G S S G ++ + Q + PSRG +GHS
Sbjct: 2254 GSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSGSGHS- 2312
Query: 248 RDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAP 307
SS G S + S +GH S GY H S
Sbjct: 2313 ----SSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGS------- 2361
Query: 308 PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGY 367
GHS +E + G R+ SSR R + +Y +G S S G+
Sbjct: 2362 ----------GHSSSYEQH--GSRSGQSSRGERHGSSSGSSSSYGQHGSGS---RQSLGH 2406
Query: 368 SYH-DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGG----------- 415
H G G++ H SGS + YG+ G +RGP S G
Sbjct: 2407 GQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESR 2466
Query: 416 ----------STCHAYSNTRDRYGRSWESYSSCG 439
+ +S+T ++G + SSCG
Sbjct: 2467 SGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCG 2500
Score = 57.8 bits (138), Expect = 2e-08
Identities = 90/373 (24%), Positives = 123/373 (32%), Gaps = 59/373 (15%)
Query: 90 SGGRRRPPASSRNRSPSGSLRS-ARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLI 148
SG R+ +S R SGS +S +RG G G SH H G S SRG
Sbjct: 1694 SGSRQ---SSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSG------RSSSRGPY 1744
Query: 149 PVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRM 208
+ G SS G SA ++ S G Q G S
Sbjct: 1745 ESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSS 1804
Query: 209 STRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDY 268
S G ++ + Q + PSRG +GHS SS G S +
Sbjct: 1805 SHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSGSGHS-----SSYGQHGSGSGWSSSSG 1859
Query: 269 APPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSR 328
S +GH S GY H S GHS +E +
Sbjct: 1860 RHGSGSGQSSGFGHHESSSWQSSGYTQHGSGS-----------------GHSSSYEQH-- 1900
Query: 329 GYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH-DGYGEALGRDHSEHLSG 387
G R+ SSR + + +Y +G S S G+ H G G++ H SG
Sbjct: 1901 GSRSGQSSRGEQHGSSSGSSSSYGQHGSGS---RQSLGHGQHGSGSGQSPSPSRGRHGSG 1957
Query: 388 SSYRDALQRYGTSHGAPPARGPRMSYGG---------------------STCHAYSNTRD 426
S + YG+ G +RGP S G + +S+T
Sbjct: 1958 SGQSSSYGPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHG 2017
Query: 427 RYGRSWESYSSCG 439
++G + SSCG
Sbjct: 2018 QHGSASGQSSSCG 2030
Score = 57.0 bits (136), Expect = 4e-08
Identities = 88/365 (24%), Positives = 116/365 (31%), Gaps = 36/365 (9%)
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRS-ARGSSGGTRGWLPSHE 127
+G S G+ + G +S R SGS S +RG G G SH
Sbjct: 1200 SGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSHG 1259
Query: 128 GHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
H G S SRG + G SS G SA ++ S G Q
Sbjct: 1260 QHGSGSG------RSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQH 1313
Query: 188 RENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSN 247
G S S H G ++ + PSRG +GHS
Sbjct: 1314 GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAGSGQSPSRGRHGSGSGHS- 1372
Query: 248 RDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAP 307
SS G S + S +GH S G H S
Sbjct: 1373 ----SSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGS------- 1421
Query: 308 PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGY 367
GHS +E + G R+ SSR R + +Y +G S S G+
Sbjct: 1422 ----------GHSSSYEQH--GSRSGQSSRGERHGSSSGSSSSYGQHGSGS---RQSLGH 1466
Query: 368 SYH-DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRD 426
H G G++ H SGS + YG+ G +RGP S G S +
Sbjct: 1467 GQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYES-GSSHSSGLGHRES 1525
Query: 427 RYGRS 431
R G+S
Sbjct: 1526 RSGQS 1530
Score = 54.7 bits (130), Expect = 2e-07
Identities = 96/382 (25%), Positives = 131/382 (34%), Gaps = 60/382 (15%)
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRRRPPAS--SRNRSPSGSLRSARGSSGGTRGWLPSH 126
+G + HG S++ G R +S R+ S SGS S G+R L H
Sbjct: 2352 SGYTQHGSG----SGHSSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSL-GH 2406
Query: 127 EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPM-- 184
H G +P S SRG R G + S+ S + W S+GP
Sbjct: 2407 GQHGSGSGQSP----SPSRG----------RHGSGSGQSSSYSPYGSGSGWSSSRGPYES 2452
Query: 185 -SQRRENYGVPPRRATISSWRNDR-----MSTRHDGYATNDGNHPSCQETRDYAPPSRGY 238
S G R+ SS S+ H + + G SC + + S +
Sbjct: 2453 GSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSH 2512
Query: 239 AYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSR-GYRNHR 297
+G S S GY S + S GH R G SR+ SY R G + R
Sbjct: 2513 GQHGSGSSQ-----SSGYGRQGSG------SGQSPGHGQRGSG-SRQSPSYGRHGSGSGR 2560
Query: 298 SSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPS-SRETRDYAPPHRDYAYRDYGH 356
SS + + G+ GH S Y H S S + Y H
Sbjct: 2561 SSSSGQHGSGLGESSGF---GHHESSSGQSSSYSQHGSGSGHSSGYGQ-----------H 2606
Query: 357 SSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMS-YGG 415
S SSRG + G + + +H SGS R G+ G P+RG S G
Sbjct: 2607 GSRSGQSSRGERHGSSSGSS--SHYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGH 2664
Query: 416 STCHAYSNTRDRYGRSWESYSS 437
S+ H + S Y S
Sbjct: 2665 SSSHGQHGSGSGRSSSRGPYES 2686
Score = 54.3 bits (129), Expect = 3e-07
Identities = 69/356 (19%), Positives = 119/356 (33%), Gaps = 57/356 (16%)
Query: 102 NRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGP 161
N+ S + S+G + + G L G + ++S+ R G + G
Sbjct: 120 NKRQESSFSHSSWSAGENDSYSRNVRGSLKPGTESISRRLSFQRDF----SGQHNSYSGQ 175
Query: 162 PPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGN 221
++ + +S G G S + NYG S+ +D + + G
Sbjct: 176 SSSYGEQNSDSHQSSGRGQCGSGSGQSPNYG--------QHGSGSGQSSSNDTHGSGSGQ 227
Query: 222 HPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYG 281
+ + + S GY+ +G + + G R+ +SSR R + +Y +G
Sbjct: 228 SSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRSSSGSSSSYGQHG 287
Query: 282 HSRRDE--------------------------------------SYSRGYRNHRSSRET- 302
R SYSRG+ S + +
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSG 347
Query: 303 --REYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYG-HSSW 359
+ + + GY +G H S S+G S + + YG H S
Sbjct: 348 FGQHESGSGQSSGYSKHGSGSGHSS-SQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESA 406
Query: 360 DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGG 415
HSS + G G++ G H + SGS + ++GT G + GP +S G
Sbjct: 407 SRHSSGRGQHSSGSGQSPG--HGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSG 460
Score = 52.4 bits (124), Expect = 1e-06
Identities = 91/418 (21%), Positives = 141/418 (33%), Gaps = 45/418 (10%)
Query: 98 ASSRNRSPSGSLRSAR-GSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSS 156
+SS + SGS +S+R G G G PS H D G++ S GP
Sbjct: 633 SSSHGQHGSGSSQSSRYGQQGSGSGQSPSRGRHGSDFGHSSSYGQHGSGSGWSSSNGPHG 692
Query: 157 RSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYA 216
G S +S+ + G S Y R+ SS S+ G +
Sbjct: 693 SVSGQSSGFGHKSGSGQSSGY-SQHGSGSSHSSGYRKHGSRSGQSSRSEQHGSS--SGLS 749
Query: 217 TNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHA 276
++ G H S S G+ + +G HS R+ SS + + G +
Sbjct: 750 SSYGQHGSGSHQ------SSGHGRQGSGSG----HSPSRVRHGSSSGHSSSHGQHGSGTS 799
Query: 277 YRDY-GHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPS 335
GH + G+ H S G GY +G + H S S+G S
Sbjct: 800 CSSSCGHYESGSGQASGFGQHESGS----------GQGYSQHGSASGHFS-SQGRHGSTS 848
Query: 336 SRETRDYAPPHRDYAYRDYG-HSSWDEHSSRGYSYHDGYGEALGR-----------DHSE 383
+ + YG H S H+S + G G++ G +
Sbjct: 849 GQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGR 908
Query: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHY 443
H SGS + R+G+ G G + S G S+ + + + S+E + S
Sbjct: 909 HGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSS 968
Query: 444 CDREHVCRKDQRNPPSLGRVLPDPREA-----YGSSSYVASIVDGGESRSEKGDSSRY 496
+H + S G+ R++ +GS S + G S G SS Y
Sbjct: 969 RSEQH--GSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSY 1024
Score = 51.2 bits (121), Expect = 2e-06
Identities = 99/371 (26%), Positives = 126/371 (33%), Gaps = 56/371 (15%)
Query: 98 ASSRNRSPSGSLRS-ARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSS 156
AS R R SGS +S G G G PS+ H G + S G S
Sbjct: 877 ASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKS 936
Query: 157 RSGGPPPKKSAPSAVARSNSWM--GSQGPMSQRRENYGVPPRRATISSW----RNDRMST 210
SG S S+S+ GS+ S R E +G + SS+ R S
Sbjct: 937 SSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQHG--SSSGSSSSYGQHGSGSRQSL 994
Query: 211 RHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAP 270
H + + G PS PSRG +G S+ S YR+ +R
Sbjct: 995 GHGQHGSGSGQSPS---------PSRGRHGSGSGQSS----SYGPYRSGSGWSSSRGPYE 1041
Query: 271 PSRGHAYRDYGHSRRDESYSRGYRNHRSSR----------ETREYAPPSRGHGYRDYGHS 320
GH+ GH S GY H SS T + HG G S
Sbjct: 1042 SGSGHS-SGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASS-GQS 1099
Query: 321 RRH------ESYSRGYRNHPSSRETRDYAPPH--RDYAYRD---YG-HSSWDEHSSRGYS 368
H S S GY S +P H R R YG H S SS
Sbjct: 1100 SSHGQHGSGSSQSSGYGRQGSGS---GQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQ 1156
Query: 369 YHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRY 428
+ G GE+ G H E SG S + ++G+ G G S G S+ +R+
Sbjct: 1157 HGSGLGESSGFGHHESSSGQS--SSYSQHGSGSGHSSGYGQHGSRSGQ-----SSRGERH 1209
Query: 429 GRSWESYSSCG 439
G S S S G
Sbjct: 1210 GSSSGSSSHYG 1220
Score = 51.2 bits (121), Expect = 2e-06
Identities = 95/421 (22%), Positives = 138/421 (32%), Gaps = 83/421 (19%)
Query: 92 GRRRPPASSRNRSPSGSLRSARGSSGGT-RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ S G+ GW S + G++ L SR
Sbjct: 2412 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2471
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 2472 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 2520
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHSS-----RGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 2521 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHH 2580
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNHRSSRETREYAP--------- 307
SS ++ Y+ G + YG H R SRG R+ SS + Y
Sbjct: 2581 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSS 2640
Query: 308 ------------PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDY------ 349
PSRG GHS H + G SSR + H
Sbjct: 2641 GHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSG-SGRSSSRGPYESRLGHSSVFGQHES 2699
Query: 350 ------AYRDYGHSSW-------------------DEHSSRGYSY---HDGYGEALGRDH 381
AY +G S E SS G S H G G + +
Sbjct: 2700 GSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGY 2759
Query: 382 SEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDF 441
H +GS + R+G+ G + G S G YS G+ SY G
Sbjct: 2760 GRHGAGSGQSLSHGRHGSGSGQSSSYGQHGS-GSGQSSGYSQHGSGSGQDGYSYCKGGSN 2818
Query: 442 H 442
H
Sbjct: 2819 H 2819
Score = 50.8 bits (120), Expect = 3e-06
Identities = 83/372 (22%), Positives = 133/372 (35%), Gaps = 30/372 (8%)
Query: 84 KKPSFQSGGRRRPPASSRNRSPSGSLRSA----RGSSGGTRGWLPSHEGHLDDGGYTPDL 139
+ PS+ G +SS R SGS +S+ + SSG + G+ G Y
Sbjct: 902 QSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHG 961
Query: 140 KMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS---QGPMSQRRENYGVPPR 196
S + + G SS S + + S + + GS Q P R + +
Sbjct: 962 SRS-GQSSRSEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQ 1020
Query: 197 RATISSWRN-DRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRG 255
++ +R+ S+ Y + G+ + S GY + + H G
Sbjct: 1021 SSSYGPYRSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHG 1080
Query: 256 YRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYR 315
+ +SS + A + ++ +G S S GY S + S GHG R
Sbjct: 1081 STSGQSSSCGQHGASSGQSSSHGQHGSG---SSQSSGYGRQGSG------SGQSPGHGQR 1131
Query: 316 DYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGE 375
G SR+ SY R S + + + + +GH S YS H G G
Sbjct: 1132 GSG-SRQSPSYGRHGSGSGRSSSSGQHGSGLGESS--GFGHHESSSGQSSSYSQH-GSGS 1187
Query: 376 ALGRDHSEHLSGSSYRDALQRYGTSHGAPP-----ARGPRMSYG---GSTCHAYSNTRDR 427
+ +H S S +R+G+S G+ G R S G + +S +R R
Sbjct: 1188 GHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGHSPSRGR 1247
Query: 428 YGRSWESYSSCG 439
+G SS G
Sbjct: 1248 HGSGLGHSSSHG 1259
Score = 50.1 bits (118), Expect = 5e-06
Identities = 88/367 (23%), Positives = 122/367 (33%), Gaps = 44/367 (11%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLI 148
Q G + P+ R+ S SG S+ G G GW S H G + S
Sbjct: 1822 QGSGSGQSPSRGRHGSGSGH-SSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHES---- 1876
Query: 149 PVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSW----R 204
SS + + S + S GS+ S R E +G + SS+
Sbjct: 1877 ------SSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRGEQHG--SSSGSSSSYGQHGS 1928
Query: 205 NDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGH------SNRDEHSSRGYRN 258
R S H + + G PS R + + +Y G S S G+ +
Sbjct: 1929 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSS 1988
Query: 259 HRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYG 318
RE+R G GHS + S + + S HG G
Sbjct: 1989 GLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSG 2048
Query: 319 HSRRHESYSRGYRNHPSSRETRDYAPPH--RDYAYRD---YG-HSSWDEHSSRGYSYHDG 372
S+ S GY S +P H R R YG H S SS + G
Sbjct: 2049 SSQ-----SSGYGRQGSGS---GQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPG 2100
Query: 373 YGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSW 432
GE+ G H E SG S + ++G+ G G S G S+ +R+G S
Sbjct: 2101 LGESSGFGHHESSSGQS--SSYSQHGSGSGHSSGYGQHGSRSGQ-----SSRGERHGSSS 2153
Query: 433 ESYSSCG 439
S S G
Sbjct: 2154 GSSSRYG 2160
Score = 50.1 bits (118), Expect = 5e-06
Identities = 88/367 (23%), Positives = 122/367 (33%), Gaps = 44/367 (11%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLI 148
Q G + P+ R+ S SG S+ G G GW S H G + S
Sbjct: 2292 QGSGSGQSPSRGRHGSGSGH-SSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHES---- 2346
Query: 149 PVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSW----R 204
SS + + S + S GS+ S R E +G + SS+
Sbjct: 2347 ------SSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRGERHG--SSSGSSSSYGQHGS 2398
Query: 205 NDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGH------SNRDEHSSRGYRN 258
R S H + + G PS R + + +Y G S S G+ +
Sbjct: 2399 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSS 2458
Query: 259 HRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYG 318
RE+R G GHS + S + + S HG G
Sbjct: 2459 GLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSG 2518
Query: 319 HSRRHESYSRGYRNHPSSRETRDYAPPH--RDYAYRD---YG-HSSWDEHSSRGYSYHDG 372
S+ S GY S +P H R R YG H S SS + G
Sbjct: 2519 SSQ-----SSGYGRQGSGS---GQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSG 2570
Query: 373 YGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSW 432
GE+ G H E SG S + ++G+ G G S G S+ +R+G S
Sbjct: 2571 LGESSGFGHHESSSGQS--SSYSQHGSGSGHSSGYGQHGSRSGQ-----SSRGERHGSSS 2623
Query: 433 ESYSSCG 439
S S G
Sbjct: 2624 GSSSHYG 2630
Score = 44.7 bits (104), Expect = 2e-04
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 28/200 (14%)
Query: 229 RDYAPPSRGYAYRDN--GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRD 286
RD++ Y+ + + G N D H S G R + P+ G G S +
Sbjct: 163 RDFSGQHNSYSGQSSSYGEQNSDSHQSSG----RGQCGSGSGQSPNYGQHGSGSGQSSSN 218
Query: 287 ESY------SRGYRNHRSSR-ETREYAPPSRGHGYRD-YG-HSRRHESYSRGYRNHPSSR 337
+++ S G+ H+SS ++ Y+ G G+ YG H R SRG R+ SS
Sbjct: 219 DTHGSGSGQSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRSSSG 278
Query: 338 ETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY 397
+ Y H + + GH G G H H SGS + + ++
Sbjct: 279 SSSSYGQ-HGSGSRQSLGHG------------RQGSGSRQSPSHVRHGSGSGHSSSHGQH 325
Query: 398 GTSHGAPPARGPRMSYGGST 417
G+ +RG S G T
Sbjct: 326 GSGSSYSYSRGHYESGSGQT 345
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 62.0 bits (149), Expect = 1e-09
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 38/279 (13%)
Query: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
Query: 63 NAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPP-------------ASSRNRSPS--- 106
A +NG L+G+ IK++ F+SG P +S + SPS
Sbjct: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
Query: 107 GSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLK-MSYSRGLIPVKRGPSSRSGGPPPKK 165
++ + S+ + S E L+ MSY P +SG P +
Sbjct: 119 RTMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYGG---KFGSSPLDQSGFSPSVQ 175
Query: 166 SAPSAVARSNSWMGSQG-PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPS 224
S + +S+S QG P SQR+ P A DR +R Y + +H
Sbjct: 176 SHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLA-------DRHYSREQRYTDHGSDHHY 228
Query: 225 CQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
+ D+ R + + + NR + S G RSSR
Sbjct: 229 RGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
Query: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
+ R+ V R+++ PPS+ R P PR++Y SSS G G SRS++G SRY
Sbjct: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
Score = 29.6 bits (65), Expect = 6.6
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTP 137
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
Query: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
>gi|45439316 peptidylprolyl isomerase E isoform 2 [Homo sapiens]
Length = 296
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDM 68
L++GGL E ++K+L A F G I+++ + D T K RGFAF+ FE DA A +M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRR 94
N + L G+ I+V AK + G R
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSR 93
>gi|5174637 peptidylprolyl isomerase E isoform 1 [Homo sapiens]
Length = 301
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDM 68
L++GGL E ++K+L A F G I+++ + D T K RGFAF+ FE DA A +M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRR 94
N + L G+ I+V AK + G R
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSR 93
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 61.2 bits (147), Expect = 2e-09
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDM 68
L + GL+ T E+ L+ VF ++GP+S V ++ D RT +SRGFAF+ FE D+K A +
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 69 NGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEG 128
NG L G+ I+V+ S P R G GG G +
Sbjct: 181 NGMELDGRRIRVDY----SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDS 236
Query: 129 HLDDG 133
+ D G
Sbjct: 237 YYDRG 241
Score = 33.1 bits (74), Expect = 0.60
Identities = 63/297 (21%), Positives = 99/297 (33%), Gaps = 42/297 (14%)
Query: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
++++ +K GT K+ ++ PS S + SR++S S S R + +
Sbjct: 13 ESRSQSKSPTGTPARVKSESRSGSRSPSRVSK-HSESHSRSRSKSRSRSRRHSHRRYTRS 71
Query: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPV--KRGPSSRSGGPPPKK-------SAPSA 170
R SH YTP+ + SR P+ +R + P P S +
Sbjct: 72 RSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTT 131
Query: 171 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRN-DRMSTRHDGYATNDGNHPSCQETR 229
GP+S Y R+ ++ +R+ + +G + R
Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR 191
Query: 230 -DYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDES 288
DY+ R + + R HS G G G RRD
Sbjct: 192 VDYSITKRAHTPTPGIYMGRPTHSGGG--------------GGGGGGGGGGGGGRRRDSY 237
Query: 289 YSRGYRNHRSSRETREYAPPSRGHG-YRDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Y RGY RG+ Y DY + R S S Y + S +R Y+P
Sbjct: 238 YDRGY---------------DRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSP 279
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 258 NHRSSRETRDYAPPSRGHAYRDYGHSRR-DESYSRGYRNHRS-SRETREYAPPSRGHGYR 315
N+ RE+R + G R SR S SR ++ S SR + SR H +R
Sbjct: 7 NNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHR 66
Query: 316 DY------GHSRRHESYSRGYRNHPSSRETRDYAP 344
Y HS R S SR Y R +R ++P
Sbjct: 67 RYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSP 101
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 60.8 bits (146), Expect = 3e-09
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDM 68
LFI + T + L+ FG++GPI +V + D T + RGFA++ FE+ DA++A ++
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 69 NGTSLHGKAIKVEQA---KKPSFQSGGRRRPPAS----SRNRSPSGSLRSARGSSGGTRG 121
N + G+ I+++ A +K Q + R P S R+RSPS +R SS G
Sbjct: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRN- 130
Query: 122 WLPSHEGHLDDGGYTP-DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
L + + S SR +R S+R P + +RS S
Sbjct: 131 --RRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKS---- 184
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
+ +R ++ G + + S H ++ + P C+ + Y
Sbjct: 185 ---LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSP-CKSPKGYTNSETKVQT 240
Query: 241 RDNGHSNRDEHSSRGYRNHRS 261
+ H R SR YR+ S
Sbjct: 241 AKHSHF-RSHSRSRSYRHKNS 260
Score = 29.6 bits (65), Expect = 6.6
Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 196 RRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRG 255
RR+ S R R +R + N S +E+R R ++Y + SR
Sbjct: 110 RRSRSPSQRRTR--SRSSSWGRNRRRSDSLKESRH-----RRFSY--------SQSKSRS 154
Query: 256 YRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETREYAP--PSRGHG 313
R S R P R R S+ + S+ +SS ++ + SR HG
Sbjct: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHG 214
Query: 314 YRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGH-SSW 359
+R +GY N + +T ++ R Y H +SW
Sbjct: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNSW 261
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 60.5 bits (145), Expect = 3e-09
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67
K+F+GG+ E L+ F K G ++EV++I D + RGF FITFE+ A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 68 MNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPS-- 125
M+ + GK ++V++A+ +S +P AS R ++ G G P
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS------QWGSRVVPNAANGWAGQPPPTW 226
Query: 126 HEGHLDDGGYTPDLKMSYSRGLIPVKRGP------------SSRSGGPPPKKSAPSAVAR 173
+G+ G + P + G P RG S+ GG PP + P
Sbjct: 227 QQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286
Query: 174 SNSWMGSQGPMSQRRENY---GVPPRRAT 199
+ GP + + GVPP AT
Sbjct: 287 PPQFSFGYGPPPPPPDQFAPPGVPPPPAT 315
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/56 (41%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENP 58
AD GKLF+GGL+ T ++ L++ F ++G + + +++KD+ T++SRGF F+ F++P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 60.5 bits (145), Expect = 3e-09
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67
K+F+GG+ E L+ F K G ++EV++I D + RGF FITFE+ A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 68 MNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPS-- 125
M+ + GK ++V++A+ +S +P AS R ++ G G P
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGAS------QWGSRVVPNAANGWAGQPPPTW 226
Query: 126 HEGHLDDGGYTPDLKMSYSRGLIPVKRGP------------SSRSGGPPPKKSAPSAVAR 173
+G+ G + P + G P RG S+ GG PP + P
Sbjct: 227 QQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286
Query: 174 SNSWMGSQGPMSQRRENY---GVPPRRAT 199
+ GP + + GVPP AT
Sbjct: 287 PPQFSFGYGPPPPPPDQFAPPGVPPPPAT 315
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/56 (41%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENP 58
AD GKLF+GGL+ T ++ L++ F ++G + + +++KD+ T++SRGF F+ F++P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,958,421
Number of Sequences: 37866
Number of extensions: 1264648
Number of successful extensions: 5464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 3779
Number of HSP's gapped (non-prelim): 1153
length of query: 496
length of database: 18,247,518
effective HSP length: 106
effective length of query: 390
effective length of database: 14,233,722
effective search space: 5551151580
effective search space used: 5551151580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.