Guide to the Human Genome
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Name: LOC100291994 Sequence: fasta or formatted (196aa) NCBI GI: 239757825
Description:

PREDICTED: hypothetical protein XP_002346350

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          9           2
 C cysteine            1.5          3           1
 D aspartate           5.1         10           2
 E glutamate           7.1         14           3
 F phenylalanine       1.0          2           1
 G glycine            11.2         22           3
 H histidine           1.5          3           1
 I isoleucine          0.5          1           1
 K lysine              2.0          4           2
 L leucine             8.7         17           2
 M methionine          1.0          2           1
 N asparagine          1.5          3           1
 P proline             7.1         14           3
 Q glutamine           1.5          3           1
 R arginine           11.7         23           2
 S serine             17.9         35           4
 T threonine           3.6          7           2
 V valine              4.6          9           1
 W tryptophan          1.5          3           1
 Y tyrosine            6.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346350 
RBMX                  0.433   RNA binding motif protein, X-linked 
RBMXL1                0.375   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.375   RNA binding motif protein, X-linked-like 1 
RBMXL2                0.245   testes-specific heterogenous nuclear ribonucleoprot...
RBMXL3                0.193   RNA binding motif protein, X-linked-like 3 
RBMY1B                0.098   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1F                0.098   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.098   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.087   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.087   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.087   RNA binding motif protein, Y-linked, family 1, membe...
SYNCRIP               0.074   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.074   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.074   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.071   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.071   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.071   synaptotagmin binding, cytoplasmic RNA interacting ...
HNRNPR                0.069   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.069   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.069   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.069   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
TAF15                 0.042   TBP-associated factor 15 isoform 2 
TAF15                 0.042   TBP-associated factor 15 isoform 1 
DHX9                  0.040   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
FLJ37078              0.037   hypothetical protein LOC222183 
METTL14               0.037   methyltransferase like 14 
ZRANB2                0.037   zinc finger protein 265 isoform 1 
ZRANB2                0.037   zinc finger protein 265 isoform 2 
EWSR1                 0.034   Ewing sarcoma breakpoint region 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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