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Search of human proteins with 33438577
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33438577 coiled-coil domain containing 132 isoform b [Homo
sapiens]
(327 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33438577 coiled-coil domain containing 132 isoform b [Homo sa... 637 0.0
gi|62865871 coiled-coil domain containing 132 isoform a [Homo sa... 613 e-176
gi|156104908 myosin heavy chain 6 [Homo sapiens] 40 0.004
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 38 0.011
gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo s... 38 0.014
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 37 0.031
gi|221139761 zinc finger protein 853 [Homo sapiens] 36 0.041
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 36 0.041
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 36 0.041
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 35 0.070
gi|81295809 pericentrin [Homo sapiens] 34 0.16
gi|38044112 restin isoform b [Homo sapiens] 34 0.20
gi|4506751 restin isoform a [Homo sapiens] 34 0.20
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 34 0.20
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 33 0.26
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 33 0.26
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 33 0.26
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 33 0.35
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 33 0.45
gi|237858621 polyamine modulated factor 1 binding protein 1 isof... 32 0.59
gi|237858619 polyamine modulated factor 1 binding protein 1 isof... 32 0.59
gi|55770834 centromere protein F [Homo sapiens] 32 0.59
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 32 0.77
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 32 1.0
gi|5031875 lamin A/C isoform 2 [Homo sapiens] 32 1.0
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens] 32 1.0
gi|4885075 atonal homolog 1 [Homo sapiens] 32 1.0
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 32 1.0
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 32 1.0
gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Ho... 32 1.0
>gi|33438577 coiled-coil domain containing 132 isoform b [Homo
sapiens]
Length = 327
Score = 637 bits (1644), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV 60
MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
Sbjct: 1 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV 60
Query: 61 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE 120
YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
Sbjct: 61 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE 120
Query: 121 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL 180
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
Sbjct: 121 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL 180
Query: 181 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA 240
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
Sbjct: 181 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA 240
Query: 241 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT 300
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
Sbjct: 241 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT 300
Query: 301 DTKFQKLQYKDLCTVCSDLITIHISLL 327
DTKFQKLQYKDLCTVCSDLITIHISLL
Sbjct: 301 DTKFQKLQYKDLCTVCSDLITIHISLL 327
>gi|62865871 coiled-coil domain containing 132 isoform a [Homo
sapiens]
Length = 964
Score = 613 bits (1580), Expect = e-176
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV 60
MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
Sbjct: 1 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV 60
Query: 61 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE 120
YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
Sbjct: 61 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE 120
Query: 121 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL 180
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
Sbjct: 121 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL 180
Query: 181 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA 240
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
Sbjct: 181 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA 240
Query: 241 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT 300
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
Sbjct: 241 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT 300
Query: 301 DTKFQKLQYKDLCT 314
DTKFQKLQYKDLCT
Sbjct: 301 DTKFQKLQYKDLCT 314
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 39.7 bits (91), Expect = 0.004
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 22/234 (9%)
Query: 35 EEFRELREQP--SDPQAEQELINSIEQVYF-SVDSFDIVKYELEKLPPVLNLQ-ELEAYR 90
EE R + EQ S AEQELI + E+V + ++ + + + LQ E+E
Sbjct: 1688 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMESDLTQLQSEVEEAV 1747
Query: 91 DKLKQQQAAVSKKVADLI-----LEKQPAYVKELER--------VTSLQTGLQLAAVICT 137
+ + + K + D L+K+ LER + LQ L A I
Sbjct: 1748 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1807
Query: 138 NGRRHLNIAKEGFTQASLGLLANQRKR--QLLIGLLKSLRTIKTLQ-RTDVRLSEMLEEE 194
G + E + G L ++KR + + G+ KS R IK L +T+ +L +
Sbjct: 1808 KGGKKQLQKLEARVRELEGELEAEQKRNAESVKGMRKSERRIKELTYQTEEDKKNLLRLQ 1867
Query: 195 DYPGAIQLCLECQKAASTFKHYSCISELNS--KLQDTLEQIEEQLDVALSKICK 246
D +QL ++ K + + L+ K+Q L++ EE+ D+A S++ K
Sbjct: 1868 DLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNK 1921
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 38.1 bits (87), Expect = 0.011
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 22/234 (9%)
Query: 35 EEFRELREQP--SDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLN-LQ-ELEAYR 90
EE R + EQ S AEQELI + E+V + + +K+ L+ LQ E+E
Sbjct: 1686 EELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAV 1745
Query: 91 DKLKQQQAAVSKKVADLI-----LEKQPAYVKELER--------VTSLQTGLQLAAVICT 137
+ + + K + D L+K+ LER + LQ L A I
Sbjct: 1746 QECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAL 1805
Query: 138 NG-RRHLNIAKEGFTQASLGLLANQRKR-QLLIGLLKSLRTIKTLQ-RTDVRLSEMLEEE 194
G ++ L + + L A Q++ + + G+ KS R IK L +T+ +L +
Sbjct: 1806 KGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQ 1865
Query: 195 DYPGAIQLCLECQKAASTFKHYSCISELNS--KLQDTLEQIEEQLDVALSKICK 246
D +QL ++ K + + L+ K+Q L++ EE+ D+A S++ K
Sbjct: 1866 DLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHELDEAEERADIAESQVNK 1919
>gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo
sapiens]
Length = 1050
Score = 37.7 bits (86), Expect = 0.014
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 10 RQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQE----LINSIEQVYFSVD 65
+Q + +P + + I S R PGKEE L+ S QA +E ++ E++Y V
Sbjct: 349 QQPVMTPCKIEPSINHILSTRKPGKEEGDPLQRVQSHQQASEEKKEKMMYCKEKIYAGVG 408
Query: 66 SFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAA----VSKKVADL--ILEKQPAYVKEL 119
F + E +R KLK+Q+ A ++K A++ +E+ +KE+
Sbjct: 409 EFSFEEI------------RAEVFRKKLKEQREAELLTSAEKRAEMQKQIEEMEKKLKEI 456
Query: 120 ERVTSLQTGLQLAAVICTNGRRHLNIAKE 148
+ +TG Q + T L IA E
Sbjct: 457 QTTQQERTGDQQEETMPTKETTKLQIASE 485
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 36.6 bits (83), Expect = 0.031
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 20/218 (9%)
Query: 49 AEQELINSIEQVYF-SVDSFDIVKYELEKLPPVLNLQ-ELEAYRDKLKQQQAAVSKKVAD 106
AEQEL+++ E+V + ++ + + V LQ E+E + + + K + D
Sbjct: 1705 AEQELLDASERVQLLHTQNTSLINTKKKLENDVSQLQSEVEEVIQESRNAEEKAKKAITD 1764
Query: 107 LI-----LEKQPAYVKELER--------VTSLQTGLQLAAVICTNGRRHLNIAKEGFTQA 153
L+K+ LER V LQ L A + G + E +
Sbjct: 1765 AAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRE 1824
Query: 154 SLGLLANQRKR--QLLIGLLKSLRTIKTLQ-RTDVRLSEMLEEEDYPGAIQLCLECQKAA 210
G + N++KR + + GL K R +K L +T+ +L +D +Q ++ K
Sbjct: 1825 LEGEVENEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQ 1884
Query: 211 STFKHYSCISELNS--KLQDTLEQIEEQLDVALSKICK 246
+ + L+ KLQ LE+ EE+ D+A S++ K
Sbjct: 1885 AEEAEEQSNANLSKFRKLQHELEEAEERADIAESQVNK 1922
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 36.2 bits (82), Expect = 0.041
Identities = 48/231 (20%), Positives = 103/231 (44%), Gaps = 4/231 (1%)
Query: 11 QGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQA-EQELINSIEQVYFSVDSFDI 69
Q LK + + ++ +V ++ ++ +EQ QA EQ+++ EQ+ V +
Sbjct: 144 QELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQEQLQQQVQEQQL 203
Query: 70 VKYELEKLPPVLNLQELE-AYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTG 128
++ + E+L LQ+ E + + +QQQ + ++ L+L++Q ++L + Q
Sbjct: 204 LQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQ 263
Query: 129 LQLAAVICTNGRRHLNI-AKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRL 187
QL ++ L + +E Q L Q++ QL L+ ++ + +V L
Sbjct: 264 QQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQQQLQP-PPLEPEEEEEVEL 322
Query: 188 SEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLD 238
M + ++ + + + +L KLQ+ L+Q+E+QL+
Sbjct: 323 ELMPVDLGSEQELEQQRQELERQQELERQQEQRQLQLKLQEELQQLEQQLE 373
Score = 33.1 bits (74), Expect = 0.35
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 2 QKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVY 61
++++ +Q L+ QE L P +EE EL P D +EQEL EQ
Sbjct: 284 EQLQQQQQQQLLQQQQEQLQQQQLQPPPLEPEEEEEVELELMPVDLGSEQEL----EQQR 339
Query: 62 FSVDSFDIVKYELEKLPPVLNLQ-ELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE 120
++ ++ + E+ L LQ EL+ +L+QQQ + ++ L L ++ E
Sbjct: 340 QELERQQELERQQEQRQLQLKLQEELQQLEQQLEQQQQQLEQQEVQLELTPVELGAQQQE 399
Query: 121 ---RVTSLQTGLQLAAVICTNG 139
+T +Q LQL V G
Sbjct: 400 VQLELTPVQPELQLELVPAAGG 421
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 36.2 bits (82), Expect = 0.041
Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 25/259 (9%)
Query: 13 LKSPQESLSDLGAIESLRVPGKEEFRELRE-----QPSDPQAEQELINSIEQVYF-SVDS 66
L+S ++ L +E + E ELR + S AEQEL+++ E+V +
Sbjct: 1667 LRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQN 1726
Query: 67 FDIVKYELEKLPPVLNLQ-ELEAYRDKLKQQQAAVSKKVADLI-----LEKQPAYVKELE 120
++ + + + +Q E+E + + + K + D L+K+ LE
Sbjct: 1727 TSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLE 1786
Query: 121 R--------VTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKR--QLLIGL 170
R V LQ L A + G + E + G + +++KR + + GL
Sbjct: 1787 RMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNAEAVKGL 1846
Query: 171 LKSLRTIKTLQ-RTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNS--KLQ 227
K R +K L +T+ +L +D +Q ++ K + + L KLQ
Sbjct: 1847 RKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNTNLAKFRKLQ 1906
Query: 228 DTLEQIEEQLDVALSKICK 246
LE+ EE+ D+A S++ K
Sbjct: 1907 HELEEAEERADIAESQVNK 1925
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 36.2 bits (82), Expect = 0.041
Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 25/259 (9%)
Query: 13 LKSPQESLSDLGAIESLRVPGKEEFRELRE-----QPSDPQAEQELINSIEQVYF-SVDS 66
L+S ++ L +E + E ELR + S AEQEL+++ E+V +
Sbjct: 1667 LRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQN 1726
Query: 67 FDIVKYELEKLPPVLNLQ-ELEAYRDKLKQQQAAVSKKVADLI-----LEKQPAYVKELE 120
++ + + + +Q E+E + + + K + D L+K+ LE
Sbjct: 1727 TSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLE 1786
Query: 121 R--------VTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKR--QLLIGL 170
R V LQ L A + G + E + G + +++KR + + GL
Sbjct: 1787 RMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNAEAVKGL 1846
Query: 171 LKSLRTIKTLQ-RTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNS--KLQ 227
K R +K L +T+ +L +D +Q ++ K + + L KLQ
Sbjct: 1847 RKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNTNLAKFRKLQ 1906
Query: 228 DTLEQIEEQLDVALSKICK 246
LE+ EE+ D+A S++ K
Sbjct: 1907 HELEEAEERADIAESQVNK 1925
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 35.4 bits (80), Expect = 0.070
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 46/240 (19%)
Query: 84 QELEAYRDKLKQQQA------AVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICT 137
+EL + R L Q++ + +K+ + + K+ Y KE+E L+ LQ +
Sbjct: 786 RELCSLRFSLNQEEEKRRNADTLYEKIREQLRRKEEQYRKEVEVKQQLELSLQTLEMELR 845
Query: 138 NGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKS-LRTIKTLQRTDVRL--------- 187
+ +LN + A L Q R L G+L + L K ++ ++
Sbjct: 846 TVKSNLNQVVQERNDAQRQLSREQNARMLQDGILTNHLSKQKEIEMAQKKMNSENSHSHE 905
Query: 188 --------SEMLEEEDYPGAIQLCLEC--------QKAASTFKHYSCISELNSKLQDTLE 231
+ ML+EE L LE +K F+ + E N LQ T++
Sbjct: 906 EEKDLSHKNSMLQEE----IAMLRLEIDTIKNQNQEKEKKCFEDLKIVKEKNEDLQKTIK 961
Query: 232 QIEEQLDVALSK--------ICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHN 283
Q EE L +S+ +N +N +K++ + + + ++ H AIH+
Sbjct: 962 QNEETLTQTISQYNGRLSVLTAENAMLN--SKLENEKQSKERLEAEVESYHSRLAAAIHD 1019
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 34.3 bits (77), Expect = 0.16
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 27/187 (14%)
Query: 85 ELEAYRDKLKQQQAA-VSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHL 143
ELEA R L A + A+L EK+ A + E + S + Q A++ + + L
Sbjct: 246 ELEALRLSLSNMHTAQLELTQANLQKEKETALTELREMLNSRRA--QELALLQSRQQHEL 303
Query: 144 NIAKEGFTQAS------LGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYP 197
+ +E + G A + K +L + K+ + +KTL+ ED+
Sbjct: 304 ELLREQHAREKEEVVLRCGQEAAELKEKLQSEMEKNAQIVKTLK------------EDWE 351
Query: 198 GAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVAL------SKICKNFDIN 251
LCLE + + KH S + +L ++ Q L + +L+ + +N + +
Sbjct: 352 SEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAELEKIFQDKNQAERALRNLESH 411
Query: 252 HYTKVQQ 258
H +++
Sbjct: 412 HQAAIEK 418
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 33.9 bits (76), Expect = 0.20
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 92 KLKQQQAAVSKKVADLILEKQ------PAYVKELE----RVTSLQTGLQLAAVICTNGRR 141
KL+QQ A K++ L +EK + +EL+ ++T+LQ L + + +
Sbjct: 746 KLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK 805
Query: 142 HLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQ 201
L I KE F +AS ++ QR Q T+ L + + + +
Sbjct: 806 ELQILKEKFAEASEEAVSVQRSMQ---------ETVNKLHQKEEQFN------------M 844
Query: 202 LCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDIN--HYTKVQQA 259
L + +K + ++ L + +E+L+ +++I K N TK+
Sbjct: 845 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 904
Query: 260 YRLLGKTQTAMDQLHMHFTQAIHNTVF 286
RL + +++L + T+A N F
Sbjct: 905 LRL---KERDVEELQLKLTKANENASF 928
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 33.9 bits (76), Expect = 0.20
Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 92 KLKQQQAAVSKKVADLILEKQ------PAYVKELE----RVTSLQTGLQLAAVICTNGRR 141
KL+QQ A K++ L +EK + +EL+ ++T+LQ L + + +
Sbjct: 781 KLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEK 840
Query: 142 HLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQ 201
L I KE F +AS ++ QR Q T+ L + + + +
Sbjct: 841 ELQILKEKFAEASEEAVSVQRSMQ---------ETVNKLHQKEEQFN------------M 879
Query: 202 LCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDIN--HYTKVQQA 259
L + +K + ++ L + +E+L+ +++I K N TK+
Sbjct: 880 LSSDLEKLRENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDE 939
Query: 260 YRLLGKTQTAMDQLHMHFTQAIHNTVF 286
RL + +++L + T+A N F
Sbjct: 940 LRL---KERDVEELQLKLTKANENASF 963
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 33.9 bits (76), Expect = 0.20
Identities = 52/273 (19%), Positives = 99/273 (36%), Gaps = 54/273 (19%)
Query: 36 EFRELREQPSDPQAEQELINSIEQVYFSVDSFDIV--KYELEKLPPVLNLQELEAYRDK- 92
E +E +++ + Q L + + + + F + + E+EKL L + E +DK
Sbjct: 195 ERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKK 254
Query: 93 ------------------LKQQQAAVSKKVADL---ILEKQPAYVKELERVTSLQTGLQL 131
+ ++Q + K++ + + +K+P Y+K E + L+
Sbjct: 255 RMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEA 314
Query: 132 AAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEML 191
A N ++H K + +L+ ++ RQ E +
Sbjct: 315 AKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQ--------------------EFEERM 354
Query: 192 EEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDIN 251
EEE L LE + K Y + E SK TL Q E+ + D+
Sbjct: 355 EEESQSQGRDLTLE----ENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLE 410
Query: 252 HYTKVQ------QAYRLLGKTQTAMDQLHMHFT 278
KV+ Q R + + Q +++L + T
Sbjct: 411 ERKKVETEAKIKQKLREIEENQKRIEKLEEYIT 443
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 33.5 bits (75), Expect = 0.26
Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 24/259 (9%)
Query: 11 QGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQ--AEQELINSIEQV---YFSVD 65
+G + +E L+ + +L EE R EQ + AEQEL++S E+V +
Sbjct: 1663 RGQEDLKEQLAIVERRANLLQAEVEELRATLEQTERARKLAEQELLDSNERVQLLHTQNT 1722
Query: 66 SFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLI-----LEKQPAYVKELE 120
S K +LE L + +A RD ++ A K + D L+K+ LE
Sbjct: 1723 SLIHTKKKLETDLMQLQSEVEDASRDARNAEEKA-KKAITDAAMMAEELKKEQDTSAHLE 1781
Query: 121 R--------VTSLQTGLQLAAVICTNG-RRHLNIAKEGFTQASLGLLANQRKR-QLLIGL 170
R V LQ L A + G ++ + + + L Q+K + + GL
Sbjct: 1782 RMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLETRIRELEFELEGEQKKNTESVKGL 1841
Query: 171 LKSLRTIKTLQ-RTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNS--KLQ 227
K R +K L +++ +L +D +Q+ ++ K + + L K Q
Sbjct: 1842 RKYERRVKELTYQSEEDRKNVLRLQDLVDKLQVKVKSYKRQAEEADEQANAHLTKFRKAQ 1901
Query: 228 DTLEQIEEQLDVALSKICK 246
LE+ EE+ D+A S++ K
Sbjct: 1902 HELEEAEERADIAESQVNK 1920
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 33.5 bits (75), Expect = 0.26
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 25/259 (9%)
Query: 13 LKSPQESLSDLGAIESLRVPGKEEFRELRE-----QPSDPQAEQELINSIEQVYF-SVDS 66
L+S ++ L +E + E ELR + S AEQEL+++ E+V +
Sbjct: 1665 LRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQELLDASERVQLLHTQN 1724
Query: 67 FDIVKYELEKLPPVLNLQ-ELEAYRDKLKQQQAAVSKKVADLI-----LEKQPAYVKELE 120
++ + + + +Q E+E + + + K + D L+K+ LE
Sbjct: 1725 TSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLE 1784
Query: 121 R--------VTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQL--LIGL 170
R V LQ L A + G + E + G + +++KR + + GL
Sbjct: 1785 RMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVEAVKGL 1844
Query: 171 LKSLRTIKTLQ-RTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNS--KLQ 227
K R +K L +T+ +L +D +Q ++ K + L+ ++Q
Sbjct: 1845 RKHERKVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRRIQ 1904
Query: 228 DTLEQIEEQLDVALSKICK 246
LE+ EE+ D+A S++ K
Sbjct: 1905 HELEEAEERADIAESQVNK 1923
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 33.5 bits (75), Expect = 0.26
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 98 AAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGL 157
A SK + + E+Q + +E+ VT+ L + R+HL+ + E
Sbjct: 478 ALESKSLQSRLAEQQQQHAREMSEVTA---ELHHTHKELDDLRQHLDKSLE--------- 525
Query: 158 LANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYS 217
N R + LL+ + K +++ T +++++ + +LC E + +HY
Sbjct: 526 -ENSRLKSLLLSMKKEVKSADTAATLNLQIAGL-----QTSVKRLCGEIVELKQHLEHYD 579
Query: 218 CISELNSKLQD---TLEQIEEQLDVALSKICKNFDINHYTKVQQ---AYRLLGKT 266
I EL LQ+ +L E L LS++ H +V+Q +Y+ L KT
Sbjct: 580 KIQELTQMLQESHSSLVSTNEHLLQELSQV----RAQHRAEVEQMHWSYQELKKT 630
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 33.1 bits (74), Expect = 0.35
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 35 EEFRELREQPSD--PQAEQELINSIEQVYFSVDSFDIVKYELE--KLPPVLNLQELEAYR 90
+ F+EL E+ + +AE++++ QVY + K ELE L +EL+A
Sbjct: 1567 QHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALE 1626
Query: 91 DKLK---------------QQQAAVSKKVADLILEKQPAYVKELE-RVTSLQTGLQ 130
D+L+ Q+ AA+ K++ + EK+ Y K E ++ L T LQ
Sbjct: 1627 DRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQ 1682
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 32.7 bits (73), Expect = 0.45
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 3 KIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYF 62
K K+L T +K + S + G + +EE + L+ + E+E +VY
Sbjct: 376 KTKALQTVIEMKDSKISSMERGLRDL-----EEEIQMLKSNGALSTEEREEEMKQMEVYR 430
Query: 63 SVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERV 122
S F +K ++E+L L+ +E A ++LK++ A + ++ + KQ K+ E +
Sbjct: 431 SHSKF--MKNKVEQLKEELSSKE--AQWEELKKKAAGLQAEIGQV---KQELSRKDTE-L 482
Query: 123 TSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQR 182
+LQT L+ ++ ++H+ + KE T Q + L L+ T+ L +
Sbjct: 483 LALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETM--LNK 540
Query: 183 TDVRLSEMLEEE 194
++ +M EE+
Sbjct: 541 KTKQIQDMAEEK 552
>gi|237858621 polyamine modulated factor 1 binding protein 1 isoform
b [Homo sapiens]
Length = 882
Score = 32.3 bits (72), Expect = 0.59
Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 29 LRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEA 88
L++ KE +EQ S+ + +EL + + +++ D K +L+K ++ ++
Sbjct: 383 LQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDM-KMND 441
Query: 89 YRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKE 148
D++K Q ++ +K L+ LQ A + + R L +KE
Sbjct: 442 MLDRIKHQ-------------HREQGSIK-----CKLEEDLQEATKLLEDKREQLKKSKE 483
Query: 149 GFTQASLGLLANQRKRQLLIGLLKSLR-TIKTLQRTDVRLSEMLEEEDYPGAIQL-CLEC 206
+L+ G L++LR K +T S LEEE+ +L C
Sbjct: 484 --------------HEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCST 529
Query: 207 QKAASTFKH---YSCISELNSKL---QDTLEQIEEQLDVALSKICKNFDINHY---TKVQ 257
Q +S K+ I +LN ++ +++L ++ QLD AL K HY T +
Sbjct: 530 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQK------EKHYLQTTITK 583
Query: 258 QAYRLLGKTQTA 269
+AY L + A
Sbjct: 584 EAYDALSRKSAA 595
>gi|237858619 polyamine modulated factor 1 binding protein 1 isoform
a [Homo sapiens]
Length = 1007
Score = 32.3 bits (72), Expect = 0.59
Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 29 LRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEA 88
L++ KE +EQ S+ + +EL + + +++ D K +L+K ++ ++
Sbjct: 528 LQMLQKESSMAEKEQTSNRKRVEELSLELSEALRKLENSDKEKRQLQKTVAEQDM-KMND 586
Query: 89 YRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKE 148
D++K Q ++ +K L+ LQ A + + R L +KE
Sbjct: 587 MLDRIKHQ-------------HREQGSIK-----CKLEEDLQEATKLLEDKREQLKKSKE 628
Query: 149 GFTQASLGLLANQRKRQLLIGLLKSLR-TIKTLQRTDVRLSEMLEEEDYPGAIQL-CLEC 206
+L+ G L++LR K +T S LEEE+ +L C
Sbjct: 629 --------------HEKLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCST 674
Query: 207 QKAASTFKH---YSCISELNSKL---QDTLEQIEEQLDVALSKICKNFDINHY---TKVQ 257
Q +S K+ I +LN ++ +++L ++ QLD AL K HY T +
Sbjct: 675 QLESSLNKYNTSQQVIQDLNKEIALQKESLMSLQAQLDKALQK------EKHYLQTTITK 728
Query: 258 QAYRLLGKTQTA 269
+AY L + A
Sbjct: 729 EAYDALSRKSAA 740
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 32.3 bits (72), Expect = 0.59
Identities = 52/250 (20%), Positives = 111/250 (44%), Gaps = 38/250 (15%)
Query: 34 KEEFRELREQPSDPQAEQELINSIE-----QVYFSVDSFDIVKYELEKLPPVLNLQ---- 84
K++ +EL + S+ + + ++ + +V + + + +E EK L L
Sbjct: 2661 KDQLKELTLENSELKKSLDCMHKDQVEKEGKVREEIAEYQLRLHEAEKKHQALLLDTNKQ 2720
Query: 85 ---ELEAYRDKLKQQQAAVS--KKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNG 139
E++ YR+KL ++ +S K DL+ + L+ T + L+ + +
Sbjct: 2721 YEVEIQTYREKLTSKEECLSSQKLEIDLLKSSKEELNNSLKATTQILEELKKTKM---DN 2777
Query: 140 RRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGA 199
+++N K+ +A Q K +LLI K L K + + ++ + +E+ G
Sbjct: 2778 LKYVNQLKKENERA-------QGKMKLLIKSCKQLEEEKEILQKELSQLQAAQEKQKTGT 2830
Query: 200 IQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQA 259
+ + + + + K +L++TLE+ ++ D L K C + I+H K+++A
Sbjct: 2831 V-MDTKVDELTTEIK----------ELKETLEEKTKEADEYLDKYC-SLLISH-EKLEKA 2877
Query: 260 YRLLGKTQTA 269
+L +TQ A
Sbjct: 2878 KEML-ETQVA 2886
Score = 32.0 bits (71), Expect = 0.77
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 33 GKEEFRELREQPSDPQAEQE--LINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYR 90
G +E + EQ DP E+E L NSIE++ +++ E ++L + L+E E +
Sbjct: 2277 GDQEIMKATEQSLDPPIEEEHQLRNSIEKLRARLEAD-----EKKQLCVLQQLKESEHHA 2331
Query: 91 DKLKQQQAAVSKKVADLILEKQPAYVKELERVTSL-QTGLQLAAVICTNGRRHLNIAK-- 147
D LK + V+ LER + +T + AA+ N + + K
Sbjct: 2332 DLLKGR-------------------VENLERELEIARTNQEHAALEAENSKGEVETLKAK 2372
Query: 148 -EGFTQASLGL-----LANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEED 195
EG TQ+ GL K L L K I L+ + +L+E++
Sbjct: 2373 IEGMTQSLRGLELDVVTIRSEKENLTNELQKEQERISELEIINSSFENILQEKE 2426
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 32.0 bits (71), Expect = 0.77
Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 31/243 (12%)
Query: 35 EEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQ--------EL 86
++ +E R Q +P E +SIE ++ + +IVK +K + L+ E+
Sbjct: 997 KQVKEYRIQ--EPNRENSFHSSIEAIW--EECKEIVKASSKKSHQIEELEQQIEKLQAEV 1052
Query: 87 EAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIA 146
+ Y+D+ + + K DL+ EK+ + L+ LQ V +H+
Sbjct: 1053 KGYKDENNRLKEKEHKNQDDLLKEKETL-------IQQLKEELQEKNVTLDVQIQHVVEG 1105
Query: 147 KEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLEC 206
K ++ + G+ + K +K L TI Q+ + S L E+D + L+
Sbjct: 1106 KRALSELTQGVTCYKAK-------IKELETILETQKVECSHSAKL-EQDILEKESIILKL 1157
Query: 207 QKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNF-DINHYTKVQQAYRLLGK 265
++ F+ + S N+K L E +L ++++ N D+ H ++++ +
Sbjct: 1158 ERNLKEFQEHLQDSVKNTK---DLNVKELKLKEEITQLTNNLQDMKHLLQLKEEEEETNR 1214
Query: 266 TQT 268
+T
Sbjct: 1215 QET 1217
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 31.6 bits (70), Expect = 1.0
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 85 ELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLN 144
EL R++ K+ +A +KK DLI + A +K+LE +L + A + +R L
Sbjct: 105 ELSKVREEFKELKARNTKKEGDLIAAQ--ARLKDLE---ALLNSKEAALSTALSEKRTL- 158
Query: 145 IAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDV--RLSEMLEEEDYPGAIQL 202
EG G +A K + +G K + L+R D RL M EE D+ Q
Sbjct: 159 ---EGELHDLRGQVA---KLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDF----QK 208
Query: 203 CLECQKAASTFKHYSC---------ISELNSKLQDTLEQIEEQLDVALSKICKNFDINHY 253
+ ++ T + + E S+L D L+++ Q + + + K + +
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYS 268
Query: 254 TKVQQAYRLLGKTQTAMDQLHMHFTQA 280
K+ A + + + H Q+
Sbjct: 269 AKLDNARQSAERNSNLVGAAHEELQQS 295
>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
Length = 572
Score = 31.6 bits (70), Expect = 1.0
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 85 ELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLN 144
EL R++ K+ +A +KK DLI + A +K+LE +L + A + +R L
Sbjct: 105 ELSKVREEFKELKARNTKKEGDLIAAQ--ARLKDLE---ALLNSKEAALSTALSEKRTL- 158
Query: 145 IAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDV--RLSEMLEEEDYPGAIQL 202
EG G +A K + +G K + L+R D RL M EE D+ Q
Sbjct: 159 ---EGELHDLRGQVA---KLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDF----QK 208
Query: 203 CLECQKAASTFKHYSC---------ISELNSKLQDTLEQIEEQLDVALSKICKNFDINHY 253
+ ++ T + + E S+L D L+++ Q + + + K + +
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYS 268
Query: 254 TKVQQAYRLLGKTQTAMDQLHMHFTQA 280
K+ A + + + H Q+
Sbjct: 269 AKLDNARQSAERNSNLVGAAHEELQQS 295
>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
Length = 664
Score = 31.6 bits (70), Expect = 1.0
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 85 ELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLN 144
EL R++ K+ +A +KK DLI + A +K+LE +L + A + +R L
Sbjct: 105 ELSKVREEFKELKARNTKKEGDLIAAQ--ARLKDLE---ALLNSKEAALSTALSEKRTL- 158
Query: 145 IAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDV--RLSEMLEEEDYPGAIQL 202
EG G +A K + +G K + L+R D RL M EE D+ Q
Sbjct: 159 ---EGELHDLRGQVA---KLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDF----QK 208
Query: 203 CLECQKAASTFKHYSC---------ISELNSKLQDTLEQIEEQLDVALSKICKNFDINHY 253
+ ++ T + + E S+L D L+++ Q + + + K + +
Sbjct: 209 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELRAQHEDQVEQYKKELEKTYS 268
Query: 254 TKVQQAYRLLGKTQTAMDQLHMHFTQA 280
K+ A + + + H Q+
Sbjct: 269 AKLDNARQSAERNSNLVGAAHEELQQS 295
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 31.6 bits (70), Expect = 1.0
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 79 PVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTN 138
P L E A RD++ + V + K P VK E++ L+ G+ + + C+
Sbjct: 85 PELGASEAAAPRDEVDGRGELVRRSSGGASSSKSPGPVKVREQLCKLKGGVVVDELGCSR 144
Query: 139 GRRHLNIAKEGFTQASLGLLANQRKRQLLIGL---LKSLRTIKTLQRTDVRLSE 189
R + G Q L AN R+R+ + GL LR + D +LS+
Sbjct: 145 QRAPSSKQVNG-VQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSK 197
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 31.6 bits (70), Expect = 1.0
Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 34 KEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYRDKL 93
KE F E D +A +I + ++ +VK EL+K ++++ +D++
Sbjct: 186 KERFEEEARLRDDTEA------AIRALRKDIEEASLVKVELDK--------KVQSLQDEV 231
Query: 94 KQQQAAVSKKVADLILEKQPAYVKELERVTSLQTGLQLA-----AVICTNGRRHLNIAKE 148
++ ++VADL+ + Q +++ +ER L+T + A + + ++ ++++ A+E
Sbjct: 232 AFLRSNHEEEVADLLAQIQASHIT-VERKDYLKTDISTALKEIRSQLESHSDQNMHQAEE 290
Query: 149 GFT--QASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLEC 206
F A L A Q K + + + LQ + L + ++ LE
Sbjct: 291 WFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKE-------SLER 343
Query: 207 QKAASTFKHYSCISELNSKLQDTLEQIEEQL 237
Q + +H +S QDT++Q+E +L
Sbjct: 344 QLSDIEERHNHDLSSY----QDTIQQLENEL 370
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 31.6 bits (70), Expect = 1.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 33 GKEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYRDK 92
G EE R EQ ++ + EQEL N IE+ +++K E + ++ E K
Sbjct: 188 GDEEDRARLEQMTEKEREQELFNRIEK-------REVLKRRFEIKKKLKTAKKKEKKEKK 240
Query: 93 LKQQQAAVSKKVADLILEKQPAYVKE 118
KQ++ KK+ + + ++ KE
Sbjct: 241 KKQEEEQEKKKLTQIQESQVTSHNKE 266
>gi|119372317 xin actin-binding repeat containing 2 isoform 1 [Homo
sapiens]
Length = 3549
Score = 31.6 bits (70), Expect = 1.0
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 9/162 (5%)
Query: 151 TQASLGLLANQRKRQLLIGLLKS--LRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQK 208
T SL NQ+ ++K L T+K+L+ + R E + + PG I+ +EC +
Sbjct: 1844 TLNSLSQAVNQKTVTKTEEIIKGNMLATLKSLKESSHRWKESKQPDAIPGDIEKAIECLE 1903
Query: 209 AASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQT 268
A+ K EL L+D LE L A + K K + G +
Sbjct: 1904 KATNTKTEILKKEL---LKDDLETSLRSLKEA-QRSFKEVHKEGVIKKDAKAVMAGSSGE 1959
Query: 269 AMDQLHMHFTQAIHNTVFQVVLGYVELCA---GNTDTKFQKL 307
+H Q N++ Q G E A G DT Q +
Sbjct: 1960 QKTDIHQVAVQRNKNSLLQPKPGPFEPAAKWQGGADTLSQTM 2001
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,341,847
Number of Sequences: 37866
Number of extensions: 468751
Number of successful extensions: 2086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2026
Number of HSP's gapped (non-prelim): 137
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.