Guide to the Human Genome
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Name: BUB1B Sequence: fasta or formatted (1050aa) NCBI GI: 59814247
Description:

budding uninhibited by benzimidazoles 1 beta

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         68           2
 C cysteine            2.2         23           2
 D aspartate           4.3         45           1
 E glutamate          10.4        109           5
 F phenylalanine       3.8         40           2
 G glycine             4.2         44           2
 H histidine           1.7         18           1
 I isoleucine          5.5         58           2
 K lysine              6.3         66           2
 L leucine             9.9        104           3
 M methionine          1.7         18           2
 N asparagine          4.2         44           2
 P proline             5.5         58           2
 Q glutamine           6.7         70           3
 R arginine            5.0         52           2
 S serine              8.3         87           3
 T threonine           5.1         54           2
 V valine              4.7         49           1
 W tryptophan          1.5         16           1
 Y tyrosine            2.6         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   budding uninhibited by benzimidazoles 1 beta 
BUB1                  0.045   budding uninhibited by benzimidazoles 1 
MAP1B                 0.010   microtubule-associated protein 1B 
TCHH                  0.010   trichohyalin 
DCLK1                 0.009   doublecortin-like kinase 1 
EIF3A                 0.009   eukaryotic translation initiation factor 3, subunit 1...
LOC645202             0.009   PREDICTED: hypothetical protein LOC645202 
MAP7D1                0.009   MAP7 domain containing 1 
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ATRIP                 0.008   ATR interacting protein isoform 2 
ATRIP                 0.008   ATR interacting protein isoform 1 
DSP                   0.008   desmoplakin isoform II 
DSP                   0.008   desmoplakin isoform I 
MAML2                 0.008   mastermind-like 2 
LOC100133758          0.008   PREDICTED: hypothetical protein, partial 
LOC440243             0.008   PREDICTED: Putative golgin subfamily A member 6-lik...
MYO10                 0.008   myosin X 
WDR87                 0.008   NYD-SP11 protein 
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
NEFM                  0.008   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.008   neurofilament, medium polypeptide 150kDa isoform 2 ...
STK33                 0.008   serine/threonine kinase 33 
PLEC1                 0.008   plectin 1 isoform 11 
PLEC1                 0.008   plectin 1 isoform 10 
PLEC1                 0.008   plectin 1 isoform 8 
PLEC1                 0.008   plectin 1 isoform 7 
PLEC1                 0.008   plectin 1 isoform 6 
PLEC1                 0.008   plectin 1 isoform 3 
PLEC1                 0.008   plectin 1 isoform 2 
PLEC1                 0.008   plectin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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