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Search of human proteins with 33285002
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33285002 selenoprotein S [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45439349 selenoprotein S [Homo sapiens] 375 e-104
gi|33285002 selenoprotein S [Homo sapiens] 375 e-104
gi|21361517 UBX domain protein 1 [Homo sapiens] 40 0.002
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 39 0.002
gi|164419758 bromodomain containing 2 [Homo sapiens] 39 0.003
gi|4826806 bromodomain containing 2 [Homo sapiens] 39 0.003
gi|217035105 DnaJ (Hsp40) homolog, subfamily C, member 11 [Homo ... 37 0.008
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 37 0.013
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 37 0.013
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 37 0.013
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 37 0.013
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 37 0.013
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 37 0.013
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens] 37 0.013
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 36 0.023
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 36 0.023
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 36 0.023
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 36 0.023
gi|157785548 PAS domain containing 1 [Homo sapiens] 36 0.023
gi|24308223 hypothetical protein LOC57577 [Homo sapiens] 36 0.023
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 35 0.029
gi|148746195 trichohyalin [Homo sapiens] 35 0.029
gi|224028248 non-POU domain containing, octamer-binding isoform ... 35 0.029
gi|224028246 non-POU domain containing, octamer-binding isoform ... 35 0.029
gi|224028244 non-POU domain containing, octamer-binding isoform ... 35 0.029
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 35 0.029
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.029
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.029
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.029
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 35 0.029
>gi|45439349 selenoprotein S [Homo sapiens]
Length = 189
Score = 375 bits (963), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ 60
MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ
Sbjct: 1 MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ 60
Query: 61 RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120
RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD
Sbjct: 61 RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120
Query: 121 SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR 180
SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR
Sbjct: 121 SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR 180
Query: 181 RGPSSGGUG 189
RGPSSGG G
Sbjct: 181 RGPSSGGUG 189
>gi|33285002 selenoprotein S [Homo sapiens]
Length = 189
Score = 375 bits (963), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ 60
MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ
Sbjct: 1 MERQEESLSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQ 60
Query: 61 RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120
RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD
Sbjct: 61 RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120
Query: 121 SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR 180
SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR
Sbjct: 121 SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGR 180
Query: 181 RGPSSGGUG 189
RGPSSGG G
Sbjct: 181 RGPSSGGUG 189
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQ-EALAAARLKMQEE--LNAQVEKHKEKLKQLEEEKR-RQ 114
R+R+ A+E + +RQ + L+AAR ++QE+ A E+ +EK ++L +R R+
Sbjct: 107 REREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVRE 166
Query: 115 KIEMWDSMQEGKSYKGN--AKKPQEEDSPGPSTSS 147
KIE D + K Y G+ ++ P PGP SS
Sbjct: 167 KIER-DKAERAKKYGGSVGSQPPPVAPEPGPVPSS 200
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
++R Q+ D+ E D ++ +E R++ QE++ QVEK +E+ K E+EK+
Sbjct: 384 QMREQEQKMRDQEERMWEQDERLREKEE----RMREQEKMWEQVEKMREEKKMQEQEKKT 439
Query: 114 QKIEMWDSMQEGKSYKGNAKKPQEED 139
+ E + MQE + + KK +EE+
Sbjct: 440 RDQE--EKMQEEERIREREKKMREEE 463
Score = 34.3 bits (77), Expect = 0.066
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 76 VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKP 135
++ +E++ KM+EE + + +EK+++ EE+ + Q+ EMW+ QE K ++ K
Sbjct: 709 MREEESMREREKKMREE-EEMMREQEEKMQEQEEKMQEQEEEMWE--QEEKMWEQEEKMW 765
Query: 136 QEEDSP 141
+++ P
Sbjct: 766 EQQRLP 771
Score = 32.3 bits (72), Expect = 0.25
Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108
QK+ + + ++ ++ + + ++ +E + KM+EE + + +EK+++ E
Sbjct: 558 QKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMREE-EEMMREQEEKMQEQE 616
Query: 109 EEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
E+ + Q+ +MW+ QE K + K ++E+
Sbjct: 617 EKMQEQEEKMWE--QEEKMQEQEEKMWEQEE 645
Score = 30.8 bits (68), Expect = 0.73
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 60 QRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMW 119
+R +R E + +++ QE + + +E ++ + +EK+++ EE+ Q+ +MW
Sbjct: 589 ERMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEEKMW 648
Query: 120 DSMQEGKSYKGNAKKPQEE 138
+ QE K ++ Q+E
Sbjct: 649 E--QEEKMWEQQRLPEQKE 665
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 71 EPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDS----MQEGK 126
E ++ + +E L+ QEE Q+++ +EK+ + EE+ R Q+ +MW ++ K
Sbjct: 327 EKELREQEKELREQKELREQEE---QMQEQEEKMWEQEEKMREQEEKMWRQEERLWEQEK 383
Query: 127 SYKGNAKKPQEEDSPGPSTSSVLKRKSDR 155
+ +K ++++ L+ K +R
Sbjct: 384 QMREQEQKMRDQEERMWEQDERLREKEER 412
Score = 29.6 bits (65), Expect = 1.6
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 71 EPDVVVKRQEALAAARLKMQE------ELNAQVEKHKEKLKQLEEEKRRQKIEMW----- 119
E +++ +++E + KMQE E ++++ +EK+ + EE+ Q+ +MW
Sbjct: 601 EEEMMREQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEEKMWEQEEKMWEQQRL 660
Query: 120 ----------DSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLR 159
+ MQE + + +K E++ T K+ D++ +R
Sbjct: 661 PEQKEKLWEHEKMQEQEKMQEQEEKIWEQEKMEKKTQEQEKKTWDQEKMR 710
Score = 27.7 bits (60), Expect = 6.1
Identities = 10/46 (21%), Positives = 29/46 (63%)
Query: 93 LNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
L ++ + +E+L++ E++ R+Q+ +MW + + +G ++ +E+
Sbjct: 270 LQEEMWRQEEELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEK 315
Score = 27.3 bits (59), Expect = 8.0
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 88 KMQEE-----LNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
KMQEE ++ + +E +++ EE+ ++Q+ MW+ QE K ++ Q+E
Sbjct: 445 KMQEEERIREREKKMREEEETMREQEEKMQKQEENMWE--QEEKEWQQQRLPEQKE 498
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 79 QEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
+E A ++QE+L A V + L Q K ++K E + ++ K+ K + +E
Sbjct: 513 EEERAHRLAELQEQLRA-VHEQLAALSQGPISKPKRKREKKEKKKKRKAEKHRGRAGADE 571
Query: 139 DSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSG 186
D GP + K +K SG GGG+ + P GPS G
Sbjct: 572 DDKGPRAPRPPQPKKSKK---------ASGSGGGSAALGPSGFGPSGG 610
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 79 QEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
+E A ++QE+L A V + L Q K ++K E + ++ K+ K + +E
Sbjct: 513 EEERAHRLAELQEQLRA-VHEQLAALSQGPISKPKRKREKKEKKKKRKAEKHRGRAGADE 571
Query: 139 DSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSG 186
D GP + K +K SG GGG+ + P GPS G
Sbjct: 572 DDKGPRAPRPPQPKKSKK---------ASGSGGGSAALGPSGFGPSGG 610
>gi|217035105 DnaJ (Hsp40) homolog, subfamily C, member 11 [Homo
sapiens]
Length = 559
Score = 37.4 bits (85), Expect = 0.008
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 22 LHTTVGSLLATYGWYIVFSCILLYVVFQKLSAR--LRALRQRQLDRAAAAVEPDVVVKRQ 79
+H T LL + +Y +++Y +L + LRA ++++L++ + DV+ K+Q
Sbjct: 378 IHLT-DQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKELEKQRESAATDVLQKKQ 436
Query: 80 EALAAARLKMQEELNAQVEKHKEKL 104
EA +A RL MQE + +E + ++
Sbjct: 437 EAESAVRL-MQESVRRIIEAEESRM 460
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 43 LLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE 102
LL+ FQK L + QL + + + K+Q+ + AA K Q+EL Q ++ ++
Sbjct: 94 LLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLAA--KRQQELEQQRQREQQ 151
Query: 103 KLKQLEEEKRRQKIEMWDSMQEGK 126
+ ++LE+++ Q++ + + ++ K
Sbjct: 152 RQEELEKQRLEQQLLILRNKEKSK 175
Score = 27.7 bits (60), Expect = 6.1
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 49 QKLSARLRALRQ-----RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-------- 95
Q+L L AL+Q +QL A + D + ++ E LK Q+E+ A
Sbjct: 75 QQLQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEML 134
Query: 96 ------QVEKHKEKLKQLEEEKRRQKIE 117
++E+ +++ +Q +EE +Q++E
Sbjct: 135 AAKRQQELEQQRQREQQRQEELEKQRLE 162
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 43 LLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE 102
LL+ FQK L + QL + + + K+Q+ + AA K Q+EL Q ++ ++
Sbjct: 93 LLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLAA--KRQQELEQQRQREQQ 150
Query: 103 KLKQLEEEKRRQKIEMWDSMQEGK 126
+ ++LE+++ Q++ + + ++ K
Sbjct: 151 RQEELEKQRLEQQLLILRNKEKSK 174
Score = 27.7 bits (60), Expect = 6.1
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 49 QKLSARLRALRQ-----RQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-------- 95
Q+L L AL+Q +QL A + D + ++ E LK Q+E+ A
Sbjct: 74 QQLQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEML 133
Query: 96 ------QVEKHKEKLKQLEEEKRRQKIE 117
++E+ +++ +Q +EE +Q++E
Sbjct: 134 AAKRQQELEQQRQREQQRQEELEKQRLE 161
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 36.6 bits (83), Expect = 0.013
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 2 ERQEESLSARPALETEG--------LRFLHTTVGSL------LATYGWYIVFSCILLYVV 47
ER+EES+S ETEG L+++ + +L LA Y + L Y +
Sbjct: 170 ERKEESISLMK--ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTI 227
Query: 48 FQKLSARLRALRQRQLDRAAAAVEPDVVVKRQ--EALAAARLKMQEELNAQVEKHKEKLK 105
+ + RA +LD +A E RQ +A AR KM E++ QV + K K+
Sbjct: 228 YNQELNETRA----KLDELSAKRETSGEKSRQLRDAQQDARDKM-EDIERQVRELKTKIS 282
Query: 106 QLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
++EEK + E + +++ + AK Q+E
Sbjct: 283 AMKEEKEQLSAERQEQIKQRTKLELKAKDLQDE 315
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE-KLKQLEEEKR 112
R R Q++ +R ++ +R E + A R +EE Q E+ +E K KQLEE+++
Sbjct: 405 RRRVEEQQRREREQRKLQEKEQQRRLEDMQALR---REEERRQAEREQEYKRKQLEEQRQ 461
Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL--RGGGYNP 165
++++ +Q+ +Y + ++ Q++ L DRKPL G G NP
Sbjct: 462 SERLQR--QLQQEHAYLKSLQQQQQQQQLQKQQQQQL-LPGDRKPLYHYGRGMNP 513
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE-KLKQLEEEKR 112
R R Q++ +R ++ +R E + A R +EE Q E+ +E K KQLEE+++
Sbjct: 405 RRRVEEQQRREREQRKLQEKEQQRRLEDMQALR---REEERRQAEREQEYKRKQLEEQRQ 461
Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL--RGGGYNP 165
++++ +Q+ +Y + ++ Q++ L DRKPL G G NP
Sbjct: 462 SERLQR--QLQQEHAYLKSLQQQQQQQQLQKQQQQQL-LPGDRKPLYHYGRGMNP 513
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE-KLKQLEEEKR 112
R R Q++ +R ++ +R E + A R +EE Q E+ +E K KQLEE+++
Sbjct: 405 RRRVEEQQRREREQRKLQEKEQQRRLEDMQALR---REEERRQAEREQEYKRKQLEEQRQ 461
Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL--RGGGYNP 165
++++ +Q+ +Y + ++ Q++ L DRKPL G G NP
Sbjct: 462 SERLQR--QLQQEHAYLKSLQQQQQQQQLQKQQQQQL-LPGDRKPLYHYGRGMNP 513
>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
Length = 1295
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE-KLKQLEEEKR 112
R R Q++ +R ++ +R E + A R +EE Q E+ +E K KQLEE+++
Sbjct: 405 RRRVEEQQRREREQRKLQEKEQQRRLEDMQALR---REEERRQAEREQEYKRKQLEEQRQ 461
Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL--RGGGYNP 165
++++ +Q+ +Y + ++ Q++ L DRKPL G G NP
Sbjct: 462 SERLQR--QLQQEHAYLKSLQQQQQQQQLQKQQQQQL-LPGDRKPLYHYGRGMNP 513
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 35.8 bits (81), Expect = 0.023
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAA---RLKMQEELNAQVEKHKEKLKQLEEEKR--- 112
RQR + A E +K +E AA R + +EE A+VE+ K KQLEE+K
Sbjct: 342 RQRIKEEEKRAAEERQRIKEEEKRAAEERQRARAEEEEKAKVEEQKRN-KQLEEKKHAMQ 400
Query: 113 --RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRK 156
+ K E + EGK N KK QE+ ++VLK++ + K
Sbjct: 401 ETKIKGEKVEQKIEGKWV--NEKKAQED----KLQTAVLKKQGEEK 440
Score = 30.4 bits (67), Expect = 0.95
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 54 RLRALRQRQLDRAAAAVEPD---VVVKRQEALAAARLKMQEELNAQVEKH---KEKLKQL 107
R++A + +++ A +E + +R+ A R +M+EE E+ KE+ K+
Sbjct: 279 RIKAEQDKKIADERARIEAEEKAAAQERERREAEERERMREEEKRAAEERQRIKEEEKRA 338
Query: 108 EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
EE++R K E + +E + K K+ EE
Sbjct: 339 AEERQRIKEEEKRAAEERQRIKEEEKRAAEE 369
Score = 28.9 bits (63), Expect = 2.8
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
RL LR+R+ + + E +K+++ AA L EEL +K +E+ K LEEE++R
Sbjct: 535 RLEELRRRRGETESEEFEK---LKQKQQEAALEL---EELK---KKREERRKVLEEEEQR 585
Query: 114 QKIEMWDSMQEGKSYKGNAKKPQE 137
+K E D + K K+ E
Sbjct: 586 RKQEEADRKLREEEEKRRLKEEIE 609
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 35.8 bits (81), Expect = 0.023
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
+R L+A RL+M EEL + E+ +E+ ++ E ++ R+K + +E + K ++ +
Sbjct: 217 ERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKE 276
Query: 137 EE 138
E
Sbjct: 277 RE 278
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 35.8 bits (81), Expect = 0.023
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
+R L+A RL+M EEL + E+ +E+ ++ E ++ R+K + +E + K ++ +
Sbjct: 321 ERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKE 380
Query: 137 EE 138
E
Sbjct: 381 RE 382
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 35.8 bits (81), Expect = 0.023
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 55 LRALRQRQLDRAAAAVEPDVVVKRQE-ALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
LR L+ +++ R AA ++ +++QE A A K Q+ + A EK K+K +Q++ K++
Sbjct: 886 LRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQK-EQIKIMKQQ 944
Query: 114 QKIEMWDSMQEGKSYKG----NAKKPQEEDSPGPSTSSVLKRKSDRKPLR 159
+KI+ ++ K + AKK ++E++ KR +++ R
Sbjct: 945 EKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRR 994
Score = 35.4 bits (80), Expect = 0.029
Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 52 SARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEE-- 109
+A+++ LR+ Q A + K+Q+A+ AA K +++ ++ K +EK+K++++
Sbjct: 898 AAQIKLLRKLQKQEQARVAKE---AKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIR 954
Query: 110 -EKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
EK + ++ ++ ++ K NAK + E
Sbjct: 955 MEKELRAQQILEAKKKKKEEAANAKLLEAE 984
Score = 33.1 bits (74), Expect = 0.15
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQV----EKHKEK- 103
+K +++ ++Q++ + + + ++ Q+ L A + K +E NA++ ++ KEK
Sbjct: 932 RKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKE 991
Query: 104 --------LKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
LK E E+RRQ + + +M+ K + + QE+
Sbjct: 992 MRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEK 1034
>gi|157785548 PAS domain containing 1 [Homo sapiens]
Length = 773
Score = 35.8 bits (81), Expect = 0.023
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 14/82 (17%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 118
+QRQL + V++Q+ KMQE+ Q +K +EK K+L+E++R++K
Sbjct: 492 QQRQLREQLQQLREQRKVQKQK-------KMQEKKKLQEQKMQEK-KKLQEQRRQKK--- 540
Query: 119 WDSMQEGKSYKGN--AKKPQEE 138
+QE K ++G K+P+EE
Sbjct: 541 -KKLQERKKWQGQMLQKEPEEE 561
>gi|24308223 hypothetical protein LOC57577 [Homo sapiens]
Length = 936
Score = 35.8 bits (81), Expect = 0.023
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 55 LRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQ 114
L+A+ +R + RA K+QE A+LK QEE Q + +EK QLE ++ +
Sbjct: 658 LKAMEERAIQRAECRRILAEKKKKQEEEKLAQLKAQEE-ERQKREAEEKEAQLERKREEK 716
Query: 115 KIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKP 157
+++ +++ K K N Q E VL RK +P
Sbjct: 717 RLKKMKELEKQKRIKRN---QQLEAIAKEHYERVLLRKKGLEP 756
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 35.4 bits (80), Expect = 0.029
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 33/142 (23%)
Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108
+K R+ R+++ + A E ++ +R+E A R K +EEL E+ K KL+++E
Sbjct: 798 RKEERRITYYREKEEEEQRRA-EEQMLKEREERERAERAKREEELREYQERVK-KLEEVE 855
Query: 109 EEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSG 168
+KR++++E+ + ++ +EE G S+ L RK R +
Sbjct: 856 RKKRQRELEI----------EERERRREEERRLGDSS---LSRKDSR-------WGDRDS 895
Query: 169 EGGGACSWRPG-------RRGP 183
EG +WR G RRGP
Sbjct: 896 EG----TWRKGPEADSEWRRGP 913
Score = 30.4 bits (67), Expect = 0.95
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 12/67 (17%)
Query: 70 VEPDVVVKRQ-EALAAARLKMQEELNAQVEK--HKEKLKQLEE---------EKRRQKIE 117
++PD ++ +Q E L + ++QE L Q +K + E+ K+LEE E+R + ++
Sbjct: 664 LDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKSAYEEQRIKDMD 723
Query: 118 MWDSMQE 124
+W+ +E
Sbjct: 724 LWEQQEE 730
Score = 28.1 bits (61), Expect = 4.7
Identities = 24/103 (23%), Positives = 48/103 (46%)
Query: 13 ALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEP 72
++ +E +R T + S+LA I + IL Q A L+ + +
Sbjct: 513 SMPSEQIRNQLTAMSSVLAKALEVIKPAHILQEKEEQHQLAVTAYLKNSRKEHQRILARR 572
Query: 73 DVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQK 115
+ +R+E L + ++ ++E Q E +K+++ EEE+ RQ+
Sbjct: 573 QTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQE 615
Score = 28.1 bits (61), Expect = 4.7
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQ 106
Q++ AR + + +R+ L+ E + + +R+ L R K +EE Q K +EK +
Sbjct: 566 QRILARRQTIEERKERLESLNIQREKEELEQREAELQKVR-KAEEERLRQEAKEREKERI 624
Query: 107 LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
L+E ++ +K + + +++ K + AK ++ D
Sbjct: 625 LQEHEQIKKKTVRERLEQIKKTELGAKAFKDID 657
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 35.4 bits (80), Expect = 0.029
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
RL R+ Q + D ++KR+E RLK ++E + +E++++LE+E+RR
Sbjct: 557 RLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERR 616
Query: 114 QKIEMWDSMQEGKSYKGNAKKPQEE 138
++ + +E + + + QEE
Sbjct: 617 EQRLKREEPEEERRQQLLKSEEQEE 641
Score = 32.7 bits (73), Expect = 0.19
Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 49 QKLSARLRA---LRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLK 105
++L RLR+ LR+ Q +R + ++KR+E + + ++ L + E+ +++L
Sbjct: 526 ERLQQRLRSEQQLRREQEERR------EQLLKREEEKRLEQERREQRLKREQEERRDQLL 579
Query: 106 QLEEEKRRQKIE 117
+ EEE+R+Q+++
Sbjct: 580 KREEERRQQRLK 591
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 19/106 (17%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
R + LR+ Q +R E + + +E RL+ +++L + E+ +E+L + EEEKR
Sbjct: 503 REQQLRREQEERR----EQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRL 558
Query: 114 QKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLR 159
+ QE + + K+ QEE +LKR+ +R+ R
Sbjct: 559 E--------QERREQR--LKREQEE-----RRDQLLKREEERRQQR 589
Score = 31.6 bits (70), Expect = 0.43
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEE---LNAQVEKHKEKLKQLEEEKRRQK 115
R+RQ DR E KR+ L K+QEE ++++ +E+L++LE ++ R++
Sbjct: 231 RERQ-DRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRE 289
Query: 116 IEMWDSMQEGKSYKGNAKKPQEED 139
+ + Q+ + ++ QEE+
Sbjct: 290 RQEEEQQQQRLRREQQLRRKQEEE 313
Score = 31.2 bits (69), Expect = 0.56
Identities = 19/99 (19%), Positives = 46/99 (46%)
Query: 58 LRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIE 117
L++ + R E + +++ E R + +EE Q + +++L++ +EE+RR++ E
Sbjct: 260 LQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQE 319
Query: 118 MWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRK 156
QE + + ++ Q L+R+ + +
Sbjct: 320 ERREQQERREQQEERREQQLRREQEERREQQLRREQEEE 358
Score = 30.8 bits (68), Expect = 0.73
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR 113
R + LR+ Q R + + ++R++ L + + + E + E+ +++LK+ +EE+R
Sbjct: 397 REQQLRREQQLRREQQLRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERRD 456
Query: 114 -QKIEMWDSMQEGKSYKGNAKKPQEED 139
K E E + K K+ QEE+
Sbjct: 457 WLKREEETERHEQERRKQQLKRDQEEE 483
Score = 29.6 bits (65), Expect = 1.6
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 76 VKRQEALAAARLKMQEELNA-QVEKHKEKLKQLEEEKRRQ---KIEMWDSMQEGKSYKGN 131
+KR++ LK +EE + E+ K++LK+ +EE+RR+ K+E + ++ + +
Sbjct: 447 LKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERREQQERREQQ 506
Query: 132 AKKPQEE 138
++ QEE
Sbjct: 507 LRREQEE 513
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 90 QEELNAQVEKHKEKLKQLEEEKRRQKI---EMWDSMQEGKSYKGNAKKPQEEDSPGPSTS 146
+EE Q E+ +++L++ +EE+R Q++ E + +Q+ + ++ QEE
Sbjct: 493 EEERREQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEE-----RRE 547
Query: 147 SVLKRKSDRK 156
+LKR+ +++
Sbjct: 548 QLLKREEEKR 557
Score = 29.3 bits (64), Expect = 2.1
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 25/151 (16%)
Query: 58 LRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQ------------EELNAQVEKHKEKLK 105
LRQ + ++ + E D + +E L R + Q EE Q+E+ +++L+
Sbjct: 1779 LRQEREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDGKYRWEEEQLQLEEQEQRLR 1838
Query: 106 Q-------------LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152
Q +E+ RR++ E+W ++ + + K +E ++
Sbjct: 1839 QERDRQYRAEEQFATQEKSRREEQELWQEEEQKRRQERERKLREEHIRRQQKEEQRHRQV 1898
Query: 153 SDRKPLRGGGYNPLSGEGGGACSWRPGRRGP 183
+ K G G+ L G + P R P
Sbjct: 1899 GEIKSQEGKGHGRLLEPGTHQFASVPVRSSP 1929
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 54 RLRALRQRQLDRAAAAVEPDVVVK-RQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKR 112
R + L++ Q +R ++ + V + QE RLK +E + E+ ++ LK E+E+R
Sbjct: 586 RQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREEP---EEERRQQLLKSEEQEER 642
Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEED 139
RQ+ ++ QE + + K+ +EE+
Sbjct: 643 RQQ-QLRREQQERREQR--LKREEEEE 666
Score = 28.9 bits (63), Expect = 2.8
Identities = 20/91 (21%), Positives = 40/91 (43%)
Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108
++L R R+RQ E + + ++ L R K + + + + +KL+Q E
Sbjct: 911 EELQREEREKRRRQEQERQYREEEQLQQEEEQLLREEREKRRRQERERQYRKDKKLQQKE 970
Query: 109 EEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
E+ ++ E + K Y+ + QEE+
Sbjct: 971 EQLLGEEPEKRRRQEREKKYREEEELQQEEE 1001
Score = 28.5 bits (62), Expect = 3.6
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 49 QKLSAR--LRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQ 106
Q+LSAR LR R+RQL + +E R + +E EK + L++
Sbjct: 782 QRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRRRQRRER-----EKELQFLEE 836
Query: 107 LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138
E+ +RR++ + ++G ++ QE+
Sbjct: 837 EEQLQRRERAQQLQEEEDGLQEDQERRRSQEQ 868
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
KR+ A+ +QE+L K ++ L++ EEE +R++ E ++ + Y+ + Q
Sbjct: 883 KRRRHTLYAKPALQEQLR----KEQQLLQEEEEELQREEREKRRRQEQERQYREEEQLQQ 938
Query: 137 EED 139
EE+
Sbjct: 939 EEE 941
Score = 28.1 bits (61), Expect = 4.7
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108
Q+ +LR L +++L R E R+E R K +EE Q E+ +E+ ++ E
Sbjct: 272 QEEEEQLRKLERQELRRERQEEEQQQQRLRREQ--QLRRKQEEERREQQEERREQQERRE 329
Query: 109 --EEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
EE+R Q++ ++ + + ++ QEE+
Sbjct: 330 QQEERREQQLR----REQEERREQQLRREQEEE 358
Score = 27.7 bits (60), Expect = 6.1
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 72 PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGN 131
PD R+ L R K +EE Q + ++++ Q EEEK +K E +E K +
Sbjct: 205 PDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEE 264
Query: 132 AKKPQE 137
++ +E
Sbjct: 265 PQRQRE 270
Score = 27.7 bits (60), Expect = 6.1
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 118
RQ + + E ++ + E L+ Q ++++ +E+L + E+EKRRQ+ E
Sbjct: 1138 RQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEEEQLLREEQEKRRQERER 1197
Query: 119 WDSMQEGKSYKGNAKKPQEED 139
+E + ++ ++ED
Sbjct: 1198 QYREEEELQRQKRKQRYRDED 1218
Score = 27.3 bits (59), Expect = 8.0
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 59 RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 118
R+RQ E ++ + ++ L R K + + + + K++L+Q EE+ R++ E
Sbjct: 981 RRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREK 1040
Query: 119 WDSMQEGKSYKGNAKKPQEED 139
+ + Y+ + QEE+
Sbjct: 1041 RRLQERERQYREEEELQQEEE 1061
>gi|224028248 non-POU domain containing, octamer-binding isoform 2
[Homo sapiens]
Length = 382
Score = 35.4 bits (80), Expect = 0.029
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK---EKLKQL------ 107
A + +++ AA E V++ RQ+ + + QEEL E H +K KQL
Sbjct: 203 AREKLEMEMEAARHEHQVMLMRQDLM-----RRQEELRRMEELHNQEVQKRKQLELRQEE 257
Query: 108 -----EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
EEE RRQ+ EM QEG +KG +E++
Sbjct: 258 ERRRREEEMRRQQEEMMRRQQEG--FKGTFPDAREQE 292
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 35.4 bits (80), Expect = 0.029
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK---EKLKQL------ 107
A + +++ AA E V++ RQ+ + + QEEL E H +K KQL
Sbjct: 292 AREKLEMEMEAARHEHQVMLMRQDLM-----RRQEELRRMEELHNQEVQKRKQLELRQEE 346
Query: 108 -----EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
EEE RRQ+ EM QEG +KG +E++
Sbjct: 347 ERRRREEEMRRQQEEMMRRQQEG--FKGTFPDAREQE 381
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 35.4 bits (80), Expect = 0.029
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK---EKLKQL------ 107
A + +++ AA E V++ RQ+ + + QEEL E H +K KQL
Sbjct: 292 AREKLEMEMEAARHEHQVMLMRQDLM-----RRQEELRRMEELHNQEVQKRKQLELRQEE 346
Query: 108 -----EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
EEE RRQ+ EM QEG +KG +E++
Sbjct: 347 ERRRREEEMRRQQEEMMRRQQEG--FKGTFPDAREQE 381
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 35.4 bits (80), Expect = 0.029
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK---EKLKQL------ 107
A + +++ AA E V++ RQ+ + + QEEL E H +K KQL
Sbjct: 292 AREKLEMEMEAARHEHQVMLMRQDLM-----RRQEELRRMEELHNQEVQKRKQLELRQEE 346
Query: 108 -----EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEED 139
EEE RRQ+ EM QEG +KG +E++
Sbjct: 347 ERRRREEEMRRQQEEMMRRQQEG--FKGTFPDAREQE 381
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 35.4 bits (80), Expect = 0.029
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
KR+EA+ A+ + +++ + E+ KEK K+ E E+ R++ + +++G PQ
Sbjct: 608 KREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQ 667
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.4 bits (80), Expect = 0.029
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
KR+EA+ A+ + +++ + E+ KEK K+ E E+ R++ + +++G PQ
Sbjct: 1162 KREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQ 1221
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 35.4 bits (80), Expect = 0.029
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136
KR+EA+ A+ + +++ + E+ KEK K+ E E+ R++ + +++G PQ
Sbjct: 1162 KREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSAHEGRLSDPQ 1221
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 35.4 bits (80), Expect = 0.029
Identities = 24/108 (22%), Positives = 50/108 (46%)
Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKI 116
AL +R+ D ++ V++R+E + + L A +EK KEK+ L+E+ K+
Sbjct: 1141 ALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKV 1200
Query: 117 EMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYN 164
E + + K+ + ++E L+ ++D +R G ++
Sbjct: 1201 EAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHS 1248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,486
Number of Sequences: 37866
Number of extensions: 410235
Number of successful extensions: 5474
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 3636
Number of HSP's gapped (non-prelim): 1839
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.