Guide to the Human Genome
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Name: SELS Sequence: fasta or formatted (189aa) NCBI GI: 45439349
Description:

selenoprotein S

Referenced in:

ER, Golgi, and the Secretory Pathway
Selenium Proteins

Other entries for this name:
alt mRNA [189aa] selenoprotein S
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         16           4
 C cysteine            1.1          2           1
 D aspartate           2.6          5           1
 E glutamate          10.1         19           3
 F phenylalanine       1.6          3           1
 G glycine             9.5         18           3
 H histidine           1.1          2           1
 I isoleucine          1.6          3           1
 K lysine              8.5         16           2
 L leucine            10.6         20           2
 M methionine          2.1          4           1
 N asparagine          1.6          3           1
 P proline             4.8          9           1
 Q glutamine           5.8         11           1
 R arginine            9.5         18           2
 S serine              8.5         16           2
 T threonine           2.6          5           2
 U selenocysteine      0.5          1           1
 V valine              5.3         10           3
 W tryptophan          1.6          3           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   selenoprotein S 
SELS                  1.000   selenoprotein S 
UBXN1                 0.043   UBX domain protein 1 
LOC283685             0.040   PREDICTED: golgi autoantigen, golgin subfamily a-li...
BRD2                  0.040   bromodomain containing 2 
BRD2                  0.040   bromodomain containing 2 
DNAJC11               0.034   DnaJ (Hsp40) homolog, subfamily C, member 11 
HDAC5                 0.034   histone deacetylase 5 isoform 3 
HDAC5                 0.034   histone deacetylase 5 isoform 1 
SMC3                  0.034   structural maintenance of chromosomes 3 
MINK1                 0.034   misshapen/NIK-related kinase isoform 4 
MINK1                 0.034   misshapen/NIK-related kinase isoform 2 
MINK1                 0.034   misshapen/NIK-related kinase isoform 3 
MINK1                 0.034   misshapen/NIK-related kinase isoform 1 
CALD1                 0.031   caldesmon 1 isoform 1 
KIAA0182              0.031   genetic suppressor element 1 isoform 2 
KIAA0182              0.031   genetic suppressor element 1 isoform 1 
BAZ2B                 0.031   bromodomain adjacent to zinc finger domain, 2B [Homo...
PASD1                 0.031   PAS domain containing 1 
KIAA1407              0.031   hypothetical protein LOC57577 
EIF3A                 0.029   eukaryotic translation initiation factor 3, subunit 1...
TCHH                  0.029   trichohyalin 
NONO                  0.029   non-POU domain containing, octamer-binding isoform ...
NONO                  0.029   non-POU domain containing, octamer-binding isoform ...
NONO                  0.029   non-POU domain containing, octamer-binding isoform ...
NONO                  0.029   non-POU domain containing, octamer-binding isoform 1...
RERE                  0.029   atrophin-1 like protein isoform b 
RERE                  0.029   atrophin-1 like protein isoform a 
RERE                  0.029   atrophin-1 like protein isoform a 
GOLGA3                0.029   Golgi autoantigen, golgin subfamily a, 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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