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Search of human proteins with 12383056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 247 1e-66
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 244 2e-65
gi|169183885 PREDICTED: similar to microtubule-associated protei... 214 2e-56
gi|169179756 PREDICTED: similar to microtubule-associated protei... 214 2e-56
gi|169180155 PREDICTED: similar to microtubule-associated protei... 214 2e-56
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 205 8e-54
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 185 7e-48
gi|239755918 PREDICTED: similar to microtubule-associated protei... 154 2e-38
gi|239750436 PREDICTED: similar to microtubule-associated protei... 154 2e-38
gi|239744738 PREDICTED: similar to microtubule-associated protei... 154 2e-38
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 135 6e-33
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 92 8e-20
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 78 2e-15
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 76 8e-15
gi|153791466 AMIGO protein [Homo sapiens] 30 0.47
gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo... 28 2.3
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 28 2.3
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 27 5.2
gi|55770840 chloride channel 3 isoform e [Homo sapiens] 27 5.2
gi|55770838 chloride channel 3 isoform b [Homo sapiens] 27 5.2
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 26 6.8
gi|31542319 epsilon subunit of coatomer protein complex isoform ... 26 6.8
gi|40805827 epsilon subunit of coatomer protein complex isoform ... 26 6.8
gi|40805825 epsilon subunit of coatomer protein complex isoform ... 26 6.8
gi|157694524 plexin D1 [Homo sapiens] 26 8.9
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 247 bits (631), Expect = 1e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
Query: 121 MKLSV 125
MKLSV
Sbjct: 121 MKLSV 125
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 244 bits (622), Expect = 2e-65
Identities = 124/125 (99%), Positives = 124/125 (99%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMV ASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
Query: 121 MKLSV 125
MKLSV
Sbjct: 121 MKLSV 125
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 214 bits (544), Expect = 2e-56
Identities = 111/126 (88%), Positives = 118/126 (93%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 33 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 91
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMVYASQET+
Sbjct: 92 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 151
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 152 GMKLSV 157
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 214 bits (544), Expect = 2e-56
Identities = 111/126 (88%), Positives = 118/126 (93%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMVYASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 372 GMKLSV 377
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 214 bits (544), Expect = 2e-56
Identities = 111/126 (88%), Positives = 118/126 (93%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMVYASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 372 GMKLSV 377
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 205 bits (521), Expect = 8e-54
Identities = 99/120 (82%), Positives = 111/120 (92%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMVYASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 185 bits (470), Expect = 7e-48
Identities = 90/105 (85%), Positives = 99/105 (94%)
Query: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNA 75
R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL+KIIRRRLQLN
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 76 NQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMVYASQETFG
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 154 bits (388), Expect = 2e-38
Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 154 bits (388), Expect = 2e-38
Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 154 bits (388), Expect = 2e-38
Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY VYASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 135 bits (341), Expect = 6e-33
Identities = 66/120 (55%), Positives = 87/120 (72%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
+PS + FKQR++ R E+V IR + P KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
++ + IIR R+ L A +AF+LLVN S+VS+S ++E+Y KDEDGF+YM YASQETFG
Sbjct: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 92.4 bits (228), Expect = 8e-20
Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 77.8 bits (190), Expect = 2e-15
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
IR+R+ L A F VN +++ S + ++YE +ED FLY+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 75.9 bits (185), Expect = 8e-15
Identities = 36/115 (31%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 121
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ Y+ + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>gi|153791466 AMIGO protein [Homo sapiens]
Length = 493
Score = 30.0 bits (66), Expect = 0.47
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 89 VSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV 125
VSVS S +++ + EDG +Y YA ETF LSV
Sbjct: 318 VSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354
>gi|50582996 multiple C2 domains, transmembrane 1 isoform S [Homo
sapiens]
Length = 778
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 79 FFLLVNGHSMVSVSTPISEVYESEKDED----------GFLYMVYASQE 117
+FL+++G T + ++ E E++ED GF+ +YA QE
Sbjct: 617 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQE 665
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 27.7 bits (60), Expect = 2.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 79 FFLLVNGHSMVSVSTPISEVYESEKDED----------GFLYMVYASQE 117
+FL+++G T + ++ E E++ED GF+ +YA QE
Sbjct: 838 YFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQE 886
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 26.6 bits (57), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 86 HSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 121
H + S PIS E+ +DE GF ++++E F M
Sbjct: 1074 HLIFSRFRPISVFREANEDESGFTCCAFSARERFLM 1109
>gi|55770840 chloride channel 3 isoform e [Homo sapiens]
Length = 866
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 10 RRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRR 69
R+ E V R+ QH +P E + K +LD + F V DH M ++ I R+
Sbjct: 720 RKKQEGIVGSSRVCFAQHTPSLPA--ESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRK 777
>gi|55770838 chloride channel 3 isoform b [Homo sapiens]
Length = 818
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 10 RRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRR 69
R+ E V R+ QH +P E + K +LD + F V DH M ++ I R+
Sbjct: 720 RKKQEGIVGSSRVCFAQHTPSLPA--ESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRK 777
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 26.2 bits (56), Expect = 6.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 23 IREQHPTKIPVIIERYKGEKQ 43
+++++P IPV+ E YKGEK+
Sbjct: 1181 LQQRNPPVIPVLQEIYKGEKK 1201
>gi|31542319 epsilon subunit of coatomer protein complex isoform a
[Homo sapiens]
Length = 308
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 83 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKL 123
+N V +S+P E + + D FLY Y +Q FG+ L
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFGVVL 70
>gi|40805827 epsilon subunit of coatomer protein complex isoform c
[Homo sapiens]
Length = 256
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 83 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKL 123
+N V +S+P E + + D FLY Y +Q FG+ L
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFGVVL 70
>gi|40805825 epsilon subunit of coatomer protein complex isoform b
[Homo sapiens]
Length = 257
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 83 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKL 123
+N V +S+P E + + D FLY Y +Q FG+ L
Sbjct: 35 INEAQRVKLSSP-----ERDVERDVFLYRAYLAQRKFGVVL 70
>gi|157694524 plexin D1 [Homo sapiens]
Length = 1925
Score = 25.8 bits (55), Expect = 8.9
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 69 RRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQ 116
R L++N N++ ++ V+ P+ V + + + G+LY++ + Q
Sbjct: 493 RLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQ 540
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,080,035
Number of Sequences: 37866
Number of extensions: 148757
Number of successful extensions: 360
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 25
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.