Guide to the Human Genome
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Name: FAM153A Sequence: fasta or formatted (310aa) NCBI GI: 123701922
Description:

hypothetical protein LOC285596

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         18           1
 C cysteine            1.3          4           1
 D aspartate           6.5         20           1
 E glutamate          14.5         45           3
 F phenylalanine       1.6          5           1
 G glycine             5.2         16           1
 H histidine           3.5         11           1
 I isoleucine          2.3          7           1
 K lysine              7.1         22           3
 L leucine             9.0         28           2
 M methionine          2.9          9           2
 N asparagine          1.6          5           1
 P proline             6.1         19           2
 Q glutamine           4.8         15           2
 R arginine            3.9         12           2
 S serine              7.4         23           2
 T threonine           7.7         24           1
 V valine              6.8         21           1
 W tryptophan          1.0          3           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC285596 
FAM153B               0.977   hypothetical protein LOC202134 
FAM153C               0.187   hypothetical protein LOC653316 
RP1L1                 0.033   retinitis pigmentosa 1-like 1 
LOC400986             0.025   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD36B              0.025   ankyrin repeat domain 36B 
MICAL3                0.022   microtubule associated monoxygenase, calponin and L...
OPTN                  0.020   optineurin 
OPTN                  0.020   optineurin 
OPTN                  0.020   optineurin 
OPTN                  0.020   optineurin 
LOC400986             0.020   PREDICTED: protein immuno-reactive with anti-PTH po...
AKAP12                0.020   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.020   A kinase (PRKA) anchor protein 12 isoform 2 
MYH10                 0.018   myosin, heavy polypeptide 10, non-muscle 
LOC100133923          0.017   PREDICTED: similar to UPF0634 protein C 
MDC1                  0.017   mediator of DNA-damage checkpoint 1 
PPIG                  0.017   peptidylprolyl isomerase G 
WBP4                  0.017   WW domain-containing binding protein 4 
C14orf174             0.017   hypothetical protein LOC161394 
SLTM                  0.017   modulator of estrogen induced transcription isoform ...
MAGED2                0.017   melanoma antigen family D, 2 
MAGED2                0.017   melanoma antigen family D, 2 
MAGED2                0.017   melanoma antigen family D, 2 
HRC                   0.015   histidine rich calcium binding protein precursor [Hom...
G3BP2                 0.015   Ras-GTPase activating protein SH3 domain-binding pro...
RBM33                 0.013   RNA binding motif protein 33 
LRCH3                 0.013   leucine-rich repeats and calponin homology (CH) doma...
NCOR1                 0.013   nuclear receptor co-repressor 1 
NPHP1                 0.013   nephrocystin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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