Guide to the Human Genome
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Name: FAM153C Sequence: fasta or formatted (114aa) NCBI GI: 118601002
Description:

hypothetical protein LOC653316

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          8           1
 C cysteine            0.0          0           0
 D aspartate           6.1          7           1
 E glutamate          14.0         16           3
 F phenylalanine       0.0          0           0
 G glycine             4.4          5           1
 H histidine           3.5          4           1
 I isoleucine          1.8          2           1
 K lysine              7.9          9           2
 L leucine             7.9          9           1
 M methionine          5.3          6           2
 N asparagine          0.0          0           0
 P proline             5.3          6           1
 Q glutamine           6.1          7           2
 R arginine            5.3          6           2
 S serine              7.9          9           2
 T threonine           8.8         10           1
 V valine              6.1          7           1
 W tryptophan          0.9          1           1
 Y tyrosine            1.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC653316 
FAM153A               0.567   hypothetical protein LOC285596 
FAM153B               0.567   hypothetical protein LOC202134 
HRC                   0.034   histidine rich calcium binding protein precursor [Hom...
EYA4                  0.034   eyes absent 4 isoform d 
EYA4                  0.034   eyes absent 4 isoform b 
EYA4                  0.034   eyes absent 4 isoform a 
ITSN2                 0.030   intersectin 2 isoform 3 
ITSN2                 0.030   intersectin 2 isoform 1 
ITSN2                 0.030   intersectin 2 isoform 2 
TMEM108               0.025   transmembrane protein 108 
TMEM108               0.025   transmembrane protein 108 
TBX3                  0.025   T-box 3 protein isoform 2 
TBX3                  0.025   T-box 3 protein isoform 1 
MAP3K7                0.020   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.020   mitogen-activated protein kinase kinase kinase 7 isof...
CDC42BPA              0.020   CDC42-binding protein kinase alpha isoform A 
IQCH                  0.020   IQ motif containing H isoform 1 
IQCH                  0.020   IQ motif containing H isoform 2 
MON1B                 0.020   MON1 homolog B 
WNK3                  0.015   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.015   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
DOCK3                 0.015   dedicator of cytokinesis 3 
GAP43                 0.015   growth associated protein 43 isoform 1 
GAP43                 0.015   growth associated protein 43 isoform 2 
CREBBP                0.015   CREB binding protein isoform b 
CREBBP                0.015   CREB binding protein isoform a 
URB1                  0.015   nucleolar preribosomal-associated protein 1 
MUC17                 0.015   mucin 17 
MAGED2                0.015   melanoma antigen family D, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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