Guide to the Human Genome
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Name: OPTN Sequence: fasta or formatted (577aa) NCBI GI: 20149572
Description:

optineurin

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt mRNA [577aa] optineurin
alt mRNA [577aa] optineurin
alt mRNA [577aa] optineurin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         39           2
 C cysteine            1.2          7           1
 D aspartate           4.3         25           2
 E glutamate          15.8         91           2
 F phenylalanine       1.7         10           2
 G glycine             3.6         21           2
 H histidine           2.6         15           1
 I isoleucine          2.9         17           2
 K lysine              9.5         55           2
 L leucine            11.8         68           3
 M methionine          2.9         17           1
 N asparagine          3.5         20           2
 P proline             2.6         15           2
 Q glutamine           6.9         40           2
 R arginine            5.2         30           1
 S serine              8.0         46           2
 T threonine           5.4         31           1
 V valine              4.0         23           2
 W tryptophan          0.3          2           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   optineurin 
OPTN                  1.000   optineurin 
OPTN                  1.000   optineurin 
OPTN                  1.000   optineurin 
IKBKG                 0.107   inhibitor of kappa light polypeptide gene enhancer ...
IKBKG                 0.107   inhibitor of kappa light polypeptide gene enhancer in...
IKBKG                 0.107   inhibitor of kappa light polypeptide gene enhancer ...
LOC283685             0.058   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283767             0.055   golgi autoantigen, golgin subfamily a-like 
MYH14                 0.055   myosin, heavy chain 14 isoform 1 
MYH14                 0.055   myosin, heavy chain 14 isoform 2 
MYH14                 0.055   myosin, heavy chain 14 isoform 3 
CENPE                 0.054   centromere protein E 
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.053   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
AKAP9                 0.053   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.051   A-kinase anchor protein 9 isoform 2 
LOC283685             0.051   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH9                  0.050   myosin, heavy polypeptide 9, non-muscle 
EEA1                  0.050   early endosome antigen 1, 162kD 
MYH10                 0.049   myosin, heavy polypeptide 10, non-muscle 
HOOK3                 0.048   golgi-associated microtubule-binding protein HOOK3 [...
CGNL1                 0.048   cingulin-like 1 
GOLGA4                0.048   golgi autoantigen, golgin subfamily a, 4 
MYH2                  0.048   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.048   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.048   myosin, heavy chain 1, skeletal muscle, adult [Homo...
GRIPAP1               0.047   GRIP1 associated protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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