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Search of human proteins with 122937486
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937486 hypothetical protein LOC646174 [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937486 hypothetical protein LOC646174 [Homo sapiens] 387 e-108
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 40 0.001
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 34 0.061
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.23
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 32 0.23
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 32 0.23
gi|237820624 pleckstrin homology domain containing, family N mem... 32 0.39
gi|237820622 pleckstrin homology domain containing, family N mem... 32 0.39
gi|119395716 forkhead box C1 [Homo sapiens] 32 0.39
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 31 0.51
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 31 0.51
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 31 0.51
gi|13399330 uroplakin 3B isoform a [Homo sapiens] 31 0.51
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 31 0.67
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 31 0.67
gi|50083293 coiled-coil domain containing 123 [Homo sapiens] 31 0.67
gi|239752581 PREDICTED: MAFF interacting protein [Homo sapiens] 30 0.88
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 0.88
gi|56549696 E1A binding protein p400 [Homo sapiens] 30 0.88
gi|134031945 SCO-spondin [Homo sapiens] 30 0.88
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein... 30 0.88
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 30 1.1
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 30 1.1
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 30 1.1
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 30 1.1
gi|91208420 bassoon protein [Homo sapiens] 30 1.5
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 30 1.5
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 30 1.5
>gi|122937486 hypothetical protein LOC646174 [Homo sapiens]
Length = 182
Score = 387 bits (995), Expect = e-108
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MEALVCAFSELHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLR 60
MEALVCAFSELHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLR
Sbjct: 1 MEALVCAFSELHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLR 60
Query: 61 HLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSAL 120
HLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSAL
Sbjct: 61 HLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSAL 120
Query: 121 LEARLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALE 180
LEARLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALE
Sbjct: 121 LEARLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALE 180
Query: 181 RP 182
RP
Sbjct: 181 RP 182
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 71 SHPPPTGQCESHWLGRLMA-GGCLP--QPEGTAWALDLPQGTLGPRNSLCSALLEARLPR 127
SH P + E W GRL A GG +P +P GT + P GT PR L L R P
Sbjct: 1191 SHADPP-EAEPPWSGRLPAFGGVIPATEPRGTPGS---PSGTQEPRGPLGLEKLPLRQPG 1246
Query: 128 DSLGSSASSSSMDPDKGALPQPSPSR 153
G+ +D +K LPQP P +
Sbjct: 1247 PEKGA------LDLEKPPLPQPGPEK 1266
Score = 37.0 bits (84), Expect = 0.009
Identities = 41/141 (29%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 17 AVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKP---KNFRLRHLRGLGLYLESHP 73
+VS + G AP + GL P P+A P + L H+ G +
Sbjct: 1015 SVSCPESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPL 1074
Query: 74 PPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLG-- 131
P T W+ L A G LP P +L P GT GP L + L R + G
Sbjct: 1075 PVT------WV--LTAQGLLPVPVPAVVSLPRPAGTPGPAGLLATLLPPLTETRAAQGPR 1126
Query: 132 SSASSSSMDPDKGALPQPSPS 152
+ A SSS P +P PS
Sbjct: 1127 APALSSSWQPPANMNREPEPS 1147
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 36.2 bits (82), Expect = 0.016
Identities = 45/175 (25%), Positives = 60/175 (34%), Gaps = 26/175 (14%)
Query: 14 REDAVSQAQGR-------PG--HPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRG 64
R ++S+ +G PG P APP GSP + A KP G
Sbjct: 164 RHSSISEGEGDRCGFAEPPGGSSPPAPPLPPPPKPGSPTQRAREASSWKPPGHSHTAPPG 223
Query: 65 LGLYLESHPPPTGQCESH----------WLGRLMAGGCLPQPEG------TAWALDLPQG 108
G + + S W L G LP P T+W L QG
Sbjct: 224 RGTQRPLTQRHSSESSSELSSSAWPGTIWTSTLSPGQRLPTPPPPDPAALTSWGLPQQQG 283
Query: 109 TLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSPSRL-RPKRSWGT 162
P + A P + SA+S S P +P+P RL P+R+ GT
Sbjct: 284 ACVPEGIALALRCRAMGPWEEQNWSATSGSPGPGPHPRSRPTPPRLPYPRRAAGT 338
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 34.3 bits (77), Expect = 0.061
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 36 EGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQ 95
EG +P A+G + K RLR LR PPP Q SH G++ A C +
Sbjct: 24 EGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPRPPPQSQASSHCGGKMSAHCC--R 81
Query: 96 PEGTAW 101
T W
Sbjct: 82 MSSTTW 87
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.3 bits (72), Expect = 0.23
Identities = 38/142 (26%), Positives = 44/142 (30%), Gaps = 41/142 (28%)
Query: 21 AQGRPGHPDAPP---NIYEGGLGSPQPQCPSAQ------GSKPKNFRLRHLRGLGLYLES 71
A+G PG PP GG G +P PS + G P +LR
Sbjct: 79 AEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLR----------- 127
Query: 72 HPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLG 131
PPP G AG C P P A A GP A L AR
Sbjct: 128 -PPPEGS----------AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAAR------- 169
Query: 132 SSASSSSMDPDKGALPQPSPSR 153
+ P G P P P +
Sbjct: 170 ---AGPGPGPGPGPGPGPGPGK 188
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 32.3 bits (72), Expect = 0.23
Identities = 46/178 (25%), Positives = 57/178 (32%), Gaps = 54/178 (30%)
Query: 25 PGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWL 84
PG P A P Q QC SA S +F +R P P E+ L
Sbjct: 204 PGTPSATPASPPASATPSQRQCVSAATSTNDSFEIR------------PAPKPVMETIPL 251
Query: 85 GRLMA---------------------GGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEA 123
G L A P PEG +++LP+G LGP +
Sbjct: 252 GDLQARALASLRANSRNSFMVIPKSKASGAPPPEGRQ-SVELPKGDLGPAS--------- 301
Query: 124 RLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALER 181
P LGS P P S L + W EE CP RT + +R
Sbjct: 302 --PSQELGSQPV-----PGGDGAPALGKSPLEVEAQWAV-EEGACP---RTATALADR 348
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 32.3 bits (72), Expect = 0.23
Identities = 46/178 (25%), Positives = 57/178 (32%), Gaps = 54/178 (30%)
Query: 25 PGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWL 84
PG P A P Q QC SA S +F +R P P E+ L
Sbjct: 204 PGTPSATPASPPASATPSQRQCVSAATSTNDSFEIR------------PAPKPVMETIPL 251
Query: 85 GRLMA---------------------GGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEA 123
G L A P PEG +++LP+G LGP +
Sbjct: 252 GDLQARALASLRANSRNSFMVIPKSKASGAPPPEGRQ-SVELPKGDLGPAS--------- 301
Query: 124 RLPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTWEEAMCPLCKRTRSGALER 181
P LGS P P S L + W EE CP RT + +R
Sbjct: 302 --PSQELGSQPV-----PGGDGAPALGKSPLEVEAQWAV-EEGACP---RTATALADR 348
>gi|237820624 pleckstrin homology domain containing, family N member
1 isoform b [Homo sapiens]
Length = 576
Score = 31.6 bits (70), Expect = 0.39
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 19 SQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFR 58
S G P PDAP + GSP+P P G P+ R
Sbjct: 502 SAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSR 541
>gi|237820622 pleckstrin homology domain containing, family N member
1 isoform a [Homo sapiens]
Length = 611
Score = 31.6 bits (70), Expect = 0.39
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 19 SQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFR 58
S G P PDAP + GSP+P P G P+ R
Sbjct: 537 SAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSR 576
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 31.6 bits (70), Expect = 0.39
Identities = 43/155 (27%), Positives = 52/155 (33%), Gaps = 40/155 (25%)
Query: 11 LHIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLE 70
LH++E Q P APP +G PQP Q K +N
Sbjct: 189 LHLKEPPPPGRQP----PPAPPEQADGNAPGPQPPPVRIQDIKTEN-------------- 230
Query: 71 SHPPPTGQCESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPR----NSLCSALLEARLP 126
G C S PQP A AL P+ +S S+L P
Sbjct: 231 ------GTCPSP-----------PQPLSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSP 273
Query: 127 RDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWG 161
SL SA S+D A P P+PS P S G
Sbjct: 274 PGSL-PSARPLSLDGADSAPPPPAPSAPPPHHSQG 307
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 31.2 bits (69), Expect = 0.51
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 36 EGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQ 95
EG +P A+G + K RLR LR PPP Q S G++ A C +
Sbjct: 24 EGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPRPPPQSQASSQCGGKMSAHCC--R 81
Query: 96 PEGTAW 101
T W
Sbjct: 82 MSSTTW 87
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 31.2 bits (69), Expect = 0.51
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 36 EGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQ 95
EG +P A+G + K RLR LR PPP Q S G++ A C +
Sbjct: 24 EGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPRPPPQSQASSQCGGKMSAHCC--R 81
Query: 96 PEGTAW 101
T W
Sbjct: 82 MSSTTW 87
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 31.2 bits (69), Expect = 0.51
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 36 EGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAGGCLPQ 95
EG +P A+G + K RLR LR PPP Q S G++ A C +
Sbjct: 24 EGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPRPPPQSQASSQCGGKMSAHCC--R 81
Query: 96 PEGTAW 101
T W
Sbjct: 82 MSSTTW 87
>gi|13399330 uroplakin 3B isoform a [Homo sapiens]
Length = 320
Score = 31.2 bits (69), Expect = 0.51
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 47 PSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLGRLMAG-GCLPQPEGTAWALDL 105
P G P R L G L+ HP G+ H G L A G PQP+ AW L +
Sbjct: 255 PVVAGGGPGAAADRLLHGQALHDPPHPTQRGR---HTAGGLQAWPGPPPQPQPLAWPLCM 311
Query: 106 PQGTLGPR 113
G +G R
Sbjct: 312 GLGEMGRR 319
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 30.8 bits (68), Expect = 0.67
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 147 PQPSPSRLRPKRSWGTWE-EAMCPLCKRTRSGALE 180
P+P+P+ P +W W+ + +CPLC R+R LE
Sbjct: 1156 PRPNPTS-SPLLAWWEWDTKFLCPLCMRSRRPRLE 1189
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 30.8 bits (68), Expect = 0.67
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 147 PQPSPSRLRPKRSWGTWE-EAMCPLCKRTRSGALE 180
P+P+P+ P +W W+ + +CPLC R+R LE
Sbjct: 1223 PRPNPTS-SPLLAWWEWDTKFLCPLCMRSRRPRLE 1256
>gi|50083293 coiled-coil domain containing 123 [Homo sapiens]
Length = 783
Score = 30.8 bits (68), Expect = 0.67
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 112 PRNSLCSALLEARL---------PRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSW 160
PR++L +A+L L PR S + SS++ D P + S+LRP+ +W
Sbjct: 48 PRSALAAAILATTLTGRTVAIPQPRQRSRSESDVSSVEQDSFIEPYATTSQLRPRPNW 105
>gi|239752581 PREDICTED: MAFF interacting protein [Homo sapiens]
Length = 333
Score = 30.4 bits (67), Expect = 0.88
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 125 LPRDSLGSSASS---------SSMDPDKGALPQPSPSRLRPKRSWGT---WEE 165
LPR+ SSA + S+ P + PQP P L P+ +W T W E
Sbjct: 281 LPREGGPSSAPTLALAVVSPPSAWGPQRRCFPQPDPEALAPEDTWATVCPWHE 333
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.4 bits (67), Expect = 0.88
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 24 RPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHP--PPTGQCES 81
+P P A P G GSP+P + GS+P+ L+ + P P
Sbjct: 3692 KPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQP-ASGQLQSETATTPAKPSFPSRSPAPE 3750
Query: 82 HWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSAL--LEARLP----RDSLGS--S 133
R A C P P G+LGP+ S+ + ++P +S+GS
Sbjct: 3751 RLPARAQAKSCTKGPREA--GEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSFGR 3808
Query: 134 ASSSSMDPDKGALPQPSPSRLRPKR 158
A S+ P + Q +PSR+ P +
Sbjct: 3809 APSAPDKPPRTPRKQATPSRVLPTK 3833
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 30.4 bits (67), Expect = 0.88
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 114 NSLCSALLEARLPRDSLGS------SASSSSMDPDKGALPQPSPSRLRP-KRSWGTWEEA 166
+SL + RLP D ++S+SS+ P G+ P PSP+R P R +A
Sbjct: 638 SSLPQMVASTRLPVDPAPPCPRPLPTSSTSSLAPVSGSGPGPSPARSSPVNRPSSATNKA 697
Query: 167 MCPLCKRT 174
+ P+ RT
Sbjct: 698 LSPVTSRT 705
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.4 bits (67), Expect = 0.88
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 75 PTGQCESHWLGRLMAGG----------CLPQPEGTAWALDLPQGTLGPRNSLCSALLEAR 124
P G C + W +L AG C +P G +W Q C +
Sbjct: 112 PEGHCFAMWQCQLQAGSANASAGSLEECCARPWGQSWWDGSSQA--------CRSCSSRH 163
Query: 125 LPRDSLGSSASSSSMDPDKGALPQPSPSRLRPKRSWGTW 163
LP GS++S + + P GA+ Q RP + +W
Sbjct: 164 LP----GSASSPALLQPLAGAVGQLWSQHQRPSATCASW 198
>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
[Homo sapiens]
Length = 480
Score = 30.4 bits (67), Expect = 0.88
Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 37/131 (28%)
Query: 26 GHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQCESHWLG 85
GHPD P G P P P + K ++ + L S G +G
Sbjct: 166 GHPDPPTESRSCSQGPPSPASPDPKACNWKKYKY-------IVLNSQASQAGSL----VG 214
Query: 86 RLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGA 145
+G PQ LP G ++ SS+SSSS ++G
Sbjct: 215 ERSSGQPCPQAR-------LPSGD------------------EASSSSSSSSSSSSEEGP 249
Query: 146 LPQPSPSRLRP 156
+P P SRL P
Sbjct: 250 IPGPQ-SRLSP 259
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 30.0 bits (66), Expect = 1.1
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 94 PQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGALPQPSPSR 153
P P G + + L P+ S ++ RLPR G++A SSS P A+P+P+
Sbjct: 238 PSPPGPPTPI---RSVLAPQPSTSNS---QRLPRPQ-GAAAKSSSQLPIPSAIPRPASRM 290
Query: 154 LRPKRSWGTWEEAMCPLCKRTRSGALERP 182
RS A+ P TR G L RP
Sbjct: 291 PLTSRSVPPGRGALPPDSLSTRKG-LPRP 318
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 91 GCLPQPEGTAWALDLPQGTLGPRNSLCSAL-LEARLPRDS-----LGSSASSSSMDPDKG 144
G QP G WA GP L + L R PR S +GS A +P +
Sbjct: 251 GARAQPGGPCWAQ-------GPPGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRA 303
Query: 145 ALPQPSPSRLRPKRS 159
P+ +PS P+++
Sbjct: 304 RAPRSAPSSREPRQT 318
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 QGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKP 54
QG PG P +P EG G+P PQ P + P
Sbjct: 1234 QGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLP 1266
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 87 LMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGAL 146
L+ LP P T A P T +S S+ + S SS+SSSS P +
Sbjct: 59 LLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSS-SSSSASSSSSSSSSSPPPASP 117
Query: 147 PQPSPSRL 154
P SP R+
Sbjct: 118 PASSPPRV 125
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 87 LMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSSMDPDKGAL 146
L+ LP P T A P T +S S+ + S SS+SSSS P +
Sbjct: 59 LLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSS-SSSSASSSSSSSSSSPPPASP 117
Query: 147 PQPSPSRL 154
P SP R+
Sbjct: 118 PASSPPRV 125
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 12 HIREDAVSQAQGRPGHPDAPPNIYEGGLGSPQPQCPSAQGSKPKNFRL-RHLRGLGLYLE 70
H D+ + Q P P + L P+P P+A+ S + F L +H GLG +
Sbjct: 2827 HFTADSALRQQTLP----RPMKTLQRSLSDPKPLSPTAEESAKERFSLYQHQGGLGSQVS 2882
Query: 71 SHPP 74
+ PP
Sbjct: 2883 ALPP 2886
Score = 28.1 bits (61), Expect = 4.4
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 20/134 (14%)
Query: 28 PDAPPNIYEGGLGSPQPQ---------CPSAQGSKPKNFRLRHLRGLGLYLESHPPPTGQ 78
P A P + +G +P PQ PS S+ + + +GLGL PP
Sbjct: 3741 PQAQPQL-QGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQQQ-QGLGL----QPPQQAL 3794
Query: 79 CESHWLGRLMAGGCLPQPEGTAWALDLPQGTLGPRNSLCSALLEARLPRDSLGSSASSSS 138
++ + P G+A A P G P S + A PR + + ++
Sbjct: 3795 TQAR-----LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTA 3849
Query: 139 MDPDKGALPQPSPS 152
P +G PQ P+
Sbjct: 3850 KAPQQGRAPQAQPA 3863
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 100 AWALD------LPQGTLGPRNSLC--SALLEARLPRDSLGSSASSSSMDPDKGALPQPSP 151
+WA D P+ T P SL S + R + +AS + P QP+P
Sbjct: 504 SWASDHNYNAVKPEKTAAPSPSLLYKSTKEDRRSEEKAAAMAASKKTAPPGSAVGKQPAP 563
Query: 152 SRLRPKRSWGTWEEAMCPLCKRTRSG 177
L PK+S A P K+ SG
Sbjct: 564 RNLVPKKSSFANVAAATPAIKKPPSG 589
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 100 AWALD------LPQGTLGPRNSLC--SALLEARLPRDSLGSSASSSSMDPDKGALPQPSP 151
+WA D P+ T P SL S + R + +AS + P QP+P
Sbjct: 504 SWASDHNYNAVKPEKTAAPSPSLLYKSTKEDRRSEEKAAAMAASKKTAPPGSAVGKQPAP 563
Query: 152 SRLRPKRSWGTWEEAMCPLCKRTRSG 177
L PK+S A P K+ SG
Sbjct: 564 RNLVPKKSSFANVAAATPAIKKPPSG 589
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,024,273
Number of Sequences: 37866
Number of extensions: 603439
Number of successful extensions: 1931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1859
Number of HSP's gapped (non-prelim): 169
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.