Guide to the Human Genome
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Name: PSRC1 Sequence: fasta or formatted (363aa) NCBI GI: 73858559
Description:

proline/serine-rich coiled-coil 1 isoform c

Referenced in:

p53 Pathway

Other entries for this name:
alt prot [333aa] proline/serine-rich coiled-coil 1 isoform a
alt prot [310aa] proline/serine-rich coiled-coil 1 isoform b
alt prot [333aa] proline/serine-rich coiled-coil 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         28           3
 C cysteine            0.6          2           1
 D aspartate           3.6         13           1
 E glutamate           5.8         21           3
 F phenylalanine       1.7          6           1
 G glycine             6.9         25           2
 H histidine           1.1          4           1
 I isoleucine          1.7          6           1
 K lysine              3.9         14           1
 L leucine            10.5         38           2
 M methionine          1.1          4           1
 N asparagine          2.5          9           1
 P proline            14.0         51           2
 Q glutamine           2.8         10           1
 R arginine           11.6         42           2
 S serine             12.9         47           3
 T threonine           5.8         21           1
 V valine              6.1         22           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline/serine-rich coiled-coil 1 isoform c 
PSRC1                 0.891   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.891   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.590   proline/serine-rich coiled-coil 1 isoform b 
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.043   WAS/WASL interacting protein family, member 1 
SRCAP                 0.042   Snf2-related CBP activator protein 
LOC100289242          0.042   PREDICTED: hypothetical protein XP_002342243 
COL27A1               0.039   collagen, type XXVII, alpha 1 
SRRM1                 0.038   serine/arginine repetitive matrix 1 
PRG4                  0.038   proteoglycan 4 isoform D 
PRG4                  0.038   proteoglycan 4 isoform C 
PRG4                  0.038   proteoglycan 4 isoform B 
PRG4                  0.038   proteoglycan 4 isoform A 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
GTSE1                 0.033   G-2 and S-phase expressed 1 
LOC645602             0.032   PREDICTED: hypothetical protein 
LOC645602             0.032   PREDICTED: hypothetical protein 
LOC645602             0.032   PREDICTED: hypothetical protein 
TNK2                  0.032   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.032   tyrosine kinase, non-receptor, 2 isoform 2 
ATXN2                 0.032   ataxin 2 
MYO15A                0.032   myosin XV 
TAF4                  0.030   TBP-associated factor 4 
MUC4                  0.030   mucin 4 isoform a 
ZNF828                0.030   zinc finger protein 828 
SFRS16                0.030   splicing factor, arginine/serine-rich 16 
BIN2                  0.030   bridging integrator 2 
SCARF2                0.029   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.029   scavenger receptor class F, member 2 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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