Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 32455262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens] 244 1e-65
gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens] 223 4e-59
gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens] 136 4e-33
gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo sapi... 32 0.16
gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo sapi... 32 0.16
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ... 31 0.21
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ... 31 0.21
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa... 28 1.8
gi|4503011 carboxypeptidase N, polypeptide 1 precursor [Homo sap... 27 3.1
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 27 3.1
gi|7706607 LEM domain containing 3 [Homo sapiens] 27 3.1
gi|160707881 formin 2 [Homo sapiens] 27 4.0
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 27 4.0
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 27 5.2
gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo ... 27 5.2
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 27 5.2
gi|190341093 fibroblast growth factor binding protein 3 [Homo sa... 26 6.8
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 26 6.8
gi|7706435 headcase [Homo sapiens] 26 6.8
gi|195972797 leukocyte immunoglobulin-like receptor, subfamily A... 26 6.8
gi|5803068 leukocyte immunoglobulin-like receptor, subfamily A (... 26 6.8
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 26 6.8
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 26 6.8
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 26 6.8
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 26 6.8
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 26 6.8
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 26 6.8
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 26 8.9
gi|4758502 hyaluronan binding protein 2 preproprotein [Homo sapi... 26 8.9
gi|126352608 elastin isoform e precursor [Homo sapiens] 26 8.9
>gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens]
Length = 125
Score = 244 bits (623), Expect = 1e-65
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRL 60
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRL
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRL 60
Query: 61 LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPN 120
LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPN
Sbjct: 61 LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPN 120
Query: 121 IISQL 125
IISQL
Sbjct: 121 IISQL 125
>gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens]
Length = 170
Score = 223 bits (567), Expect = 4e-59
Identities = 125/170 (73%), Positives = 125/170 (73%), Gaps = 45/170 (26%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV-- 58
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVGD 60
Query: 59 -------------------------------------------RLLADPTGAFGKETDLL 75
RLLADPTGAFGKETDLL
Sbjct: 61 AIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKVRLLADPTGAFGKETDLL 120
Query: 76 LDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 125
LDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL
Sbjct: 121 LDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL 170
>gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens]
Length = 214
Score = 136 bits (343), Expect = 4e-33
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 57 KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS 116
KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS
Sbjct: 146 KVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCS 205
Query: 117 LAPNIISQL 125
LAPNIISQL
Sbjct: 206 LAPNIISQL 214
Score = 115 bits (289), Expect = 7e-27
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV 58
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV
Sbjct: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKV 58
>gi|13435366 desmocollin 2 isoform Dsc2b preproprotein [Homo
sapiens]
Length = 847
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 40 SGGVRSFSRAAAAMAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDG 99
S G +++ + + I+ + L DPTG + +D++ SI R L R + +++G
Sbjct: 490 SNGYKAYDPETRSSSGIRYKKLTDPTGW------VTIDENTGSIKVFRSLDREAETIKNG 543
Query: 100 IVKALNVEPDGTGLTCSLAPNIISQ 124
I + D G TC+ II Q
Sbjct: 544 IYNITVLASDQGGRTCTGTLGIILQ 568
>gi|13435364 desmocollin 2 isoform Dsc2a preproprotein [Homo
sapiens]
Length = 901
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 40 SGGVRSFSRAAAAMAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDG 99
S G +++ + + I+ + L DPTG + +D++ SI R L R + +++G
Sbjct: 490 SNGYKAYDPETRSSSGIRYKKLTDPTGW------VTIDENTGSIKVFRSLDREAETIKNG 543
Query: 100 IVKALNVEPDGTGLTCSLAPNIISQ 124
I + D G TC+ II Q
Sbjct: 544 IYNITVLASDQGGRTCTGTLGIILQ 568
>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
sapiens]
Length = 149
Score = 31.2 bits (69), Expect = 0.21
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLL 61
G + C R AG + GG A+ A R C E E +G V++F R A A R
Sbjct: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSS 75
Query: 62 ADPTGA 67
+ P A
Sbjct: 76 SAPEEA 81
>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
Length = 149
Score = 31.2 bits (69), Expect = 0.21
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLL 61
G + C R AG + GG A+ A R C E E +G V++F R A A R
Sbjct: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSS 75
Query: 62 ADPTGA 67
+ P A
Sbjct: 76 SAPEEA 81
>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
sapiens]
Length = 272
Score = 28.1 bits (61), Expect = 1.8
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 22/128 (17%)
Query: 4 AGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLLAD 63
AG+ + + + Y+ GG A + R+ GE G + A AA ++ RLL D
Sbjct: 43 AGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAA---LRGRLLCD 99
Query: 64 --------------PTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPD 109
P G +E L L ++L RL R+ + V AL +E
Sbjct: 100 FRRAPFAGRRRRAPPGGCEERELALALQEALEPAV---RLGRYPRAQLE--VSALLLEDG 154
Query: 110 GTGLTCSL 117
G+ L +L
Sbjct: 155 GSALAAAL 162
>gi|4503011 carboxypeptidase N, polypeptide 1 precursor [Homo
sapiens]
Length = 458
Score = 27.3 bits (59), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 67 AFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL-NVEPDGTGLTCSLAPN 120
A G+E L L + L F NR +R ++QD + L ++ PDG + + PN
Sbjct: 90 ALGRELMLQLSEFLCEEFRNRN-QRIVQLIQDTRIHILPSMNPDGYEVAAAQGPN 143
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 1 MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEW 38
+GL G A S + GG GG +AAAAA C W
Sbjct: 68 LGLGGRSAASSSVSFSPGGGGGGAAAAAAA-ACRGMSW 104
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 27.3 bits (59), Expect = 3.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 5 GVCALRRSAGYILVGGAGGQSAAAAA 30
G+C + S L+GG GG SAA AA
Sbjct: 106 GLCRISASGPESLLGGPGGASAAPAA 131
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 26.9 bits (58), Expect = 4.0
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 9 LRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLLADPTGAF 68
L+RSAG L G GG A R + SGG ++ + G
Sbjct: 8 LKRSAGDALHEGGGGAEDALGPRDVEATKKGSGGKKALGKHGKGGGG------GGGGGES 61
Query: 69 GKETDLLLDDSLVSIFGNRRLKR 91
GK+ DS S+F N R+++
Sbjct: 62 GKKKS--KSDSRASVFSNLRIRK 82
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 26.9 bits (58), Expect = 4.0
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 19 GGAGGQSAAAAAR-----RCSEGEWASGGVRSFSRAAAAMAPIKVRLLADPTGA 67
GG GG AAAA R + ASGG + + A AA A + R L G+
Sbjct: 36 GGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGS 89
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 26.6 bits (57), Expect = 5.2
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPI 56
G AG + A IL GG GG AAAAA E A AAA+ P+
Sbjct: 205 GGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQA---------GAAALLPL 250
>gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo
sapiens]
Length = 149
Score = 26.6 bits (57), Expect = 5.2
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLL 61
G + C R AG + GG A+ A R E E +G V++F R A A R
Sbjct: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFERQEAGPAKADWRSS 75
Query: 62 ADPTGA 67
+ P A
Sbjct: 76 SAPEEA 81
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 23 GQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLLADPTGA 67
GQ A R E E A G R + A + P + R+L + +GA
Sbjct: 779 GQEAVLDQRMLGEEEEAVGERRILGKEGATLEPKQQRILGEESGA 823
>gi|190341093 fibroblast growth factor binding protein 3 [Homo
sapiens]
Length = 258
Score = 26.2 bits (56), Expect = 6.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 26 AAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLLADPTG 66
AA AARR + GG+R R AP++ RL A G
Sbjct: 100 AAYAARRAHFWKQVLGGLRKKRRPCHDPAPLQARLCAGKKG 140
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 26.2 bits (56), Expect = 6.8
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 8 ALRRSAGYILVGGAG---GQSAAAAARRCSEGEW---------ASGGVRSFSRAAAAMAP 55
A R G +GG GQ AA A+RC G+ SGGVR + AA
Sbjct: 184 AKSRGGGVRSLGGKKMRRGQKGAAGAKRCGGGKQPRRRGQKASKSGGVRCQTPQKAAAQG 243
Query: 56 IKVR 59
+K R
Sbjct: 244 VKSR 247
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 26.2 bits (56), Expect = 6.8
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 3 LAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAM--------- 53
LA A +AG L AG +AAA A A G + AAAA
Sbjct: 30 LAAAGAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDAK 89
Query: 54 --APIKVRLLADPTGAFGKETDLLLDD 78
AP L+ +FG+ DL DD
Sbjct: 90 NEAPCATPLIC----SFGRPVDLEKDD 112
>gi|195972797 leukocyte immunoglobulin-like receptor, subfamily A
(with TM domain), member 2 isoform a [Homo sapiens]
Length = 483
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 65 TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIV 101
TGA+ K T L +V++ GN L+ S V DG +
Sbjct: 117 TGAYSKPTLSALPSPVVTLGGNVTLQCVSQVAFDGFI 153
>gi|5803068 leukocyte immunoglobulin-like receptor, subfamily A
(with TM domain), member 2 isoform b [Homo sapiens]
Length = 466
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 65 TGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIV 101
TGA+ K T L +V++ GN L+ S V DG +
Sbjct: 117 TGAYSKPTLSALPSPVVTLGGNVTLQCVSQVAFDGFI 153
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 26.2 bits (56), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 19 GGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
GG GG S S G + GG R + AAAAMA
Sbjct: 42 GGTGGSSG-------SSGSGSGGGRRGAAAAAAAMA 70
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 26.2 bits (56), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 19 GGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
GG GG S S G + GG R + AAAAMA
Sbjct: 42 GGTGGSSG-------SSGSGSGGGRRGAAAAAAAMA 70
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 26.2 bits (56), Expect = 6.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 19 GGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVR 59
GG+GG A + S G + GG S SR+ + P VR
Sbjct: 2306 GGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVR 2346
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 53 MAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 104
M +K LLA+ T A LL DDS V+ F +L F ++ + K L
Sbjct: 1582 MMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCL 1633
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 53 MAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 104
M +K LLA+ T A LL DDS V+ F +L F ++ + K L
Sbjct: 1622 MMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCL 1673
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 53 MAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 104
M +K LLA+ T A LL DDS V+ F +L F ++ + K L
Sbjct: 1569 MMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCL 1620
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 25.8 bits (55), Expect = 8.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 87 RRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 121
RRL V+ + +N++ DG G TC P++
Sbjct: 383 RRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSL 417
>gi|4758502 hyaluronan binding protein 2 preproprotein [Homo
sapiens]
Length = 560
Score = 25.8 bits (55), Expect = 8.9
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 34 SEGEWASGGVRSFSRAAAAMAPIKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFS 93
SE + GV + + + KV+L+A+ + D ++DDS++ GN + K
Sbjct: 445 SECHISGWGVTETGKGSRQLLDAKVKLIANTLCNSRQLYDHMIDDSMICA-GNLQ-KPGQ 502
Query: 94 MVVQDGIVKALNVEPDGT---------GLTCSLAPNIISQL 125
Q L E DGT GL C P + +Q+
Sbjct: 503 DTCQGDSGGPLTCEKDGTYYVYGIVSWGLECGKRPGVYTQV 543
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 25.8 bits (55), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCS 34
G GV AGY G G Q+AAAAA + +
Sbjct: 231 GPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAA 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,530,417
Number of Sequences: 37866
Number of extensions: 170406
Number of successful extensions: 710
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 74
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.