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Search of human proteins with 30794472
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo sap... 854 0.0
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 353 2e-97
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap... 341 6e-94
gi|11141887 brain link protein-1 [Homo sapiens] 286 2e-77
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 222 5e-58
gi|38372931 brevican isoform 2 [Homo sapiens] 209 4e-54
gi|38372935 brevican isoform 1 [Homo sapiens] 209 4e-54
gi|187607300 versican isoform 2 [Homo sapiens] 194 2e-49
gi|21361116 versican isoform 1 [Homo sapiens] 191 8e-49
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 189 3e-48
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 189 3e-48
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 78 2e-14
gi|61743978 stabilin 1 precursor [Homo sapiens] 69 6e-12
gi|61743980 stabilin 2 precursor [Homo sapiens] 63 5e-10
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 42 8e-04
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 42 0.001
gi|154426280 V-set and immunoglobulin domain containing 4 isofor... 42 0.001
gi|6005958 V-set and immunoglobulin domain containing 4 isoform ... 42 0.001
gi|33519481 neural cell adhesion molecule 2 precursor [Homo sapi... 42 0.001
gi|62865876 immunoglobulin superfamily, member 11 isoform b [Hom... 42 0.001
gi|62865874 immunoglobulin superfamily, member 11 isoform a [Hom... 40 0.003
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens] 39 0.006
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 39 0.008
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 38 0.014
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 38 0.014
gi|122937309 leucine rich repeat containing 4B [Homo sapiens] 37 0.041
gi|8393638 F11 receptor precursor [Homo sapiens] 35 0.12
gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens] 35 0.12
gi|54607118 leucine-rich repeats and immunoglobulin-like domains... 35 0.12
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 35 0.12
>gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
sapiens]
Length = 402
Score = 854 bits (2207), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MVCARAALGPGALWAAAWGVLLLTAPAGAQRGRKKVVHVLEGESGSVVVQTAPGQVVSHR 60
MVCARAALGPGALWAAAWGVLLLTAPAGAQRGRKKVVHVLEGESGSVVVQTAPGQVVSHR
Sbjct: 1 MVCARAALGPGALWAAAWGVLLLTAPAGAQRGRKKVVHVLEGESGSVVVQTAPGQVVSHR 60
Query: 61 GGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQG 120
GGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQG
Sbjct: 61 GGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQG 120
Query: 121 DGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAE 180
DGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAE
Sbjct: 121 DGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAE 180
Query: 181 AQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAG 240
AQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAG
Sbjct: 181 AQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAG 240
Query: 241 GGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAV 300
GGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAV
Sbjct: 241 GGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAV 300
Query: 301 AKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSLGFPDATRRLFG 360
AKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSLGFPDATRRLFG
Sbjct: 301 AKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSLGFPDATRRLFG 360
Query: 361 VYCYRAPGAPDPAPGGWGWGWAGGGGWAGGARDPAAWTPLHV 402
VYCYRAPGAPDPAPGGWGWGWAGGGGWAGGARDPAAWTPLHV
Sbjct: 361 VYCYRAPGAPDPAPGGWGWGWAGGGGWAGGARDPAAWTPLHV 402
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 353 bits (906), Expect = 2e-97
Identities = 169/335 (50%), Positives = 221/335 (65%), Gaps = 13/335 (3%)
Query: 35 KVVHVLEGESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHD--GVRLKWTKVV-D 91
+ +H+ ++V+ +V SHRGG + LPC+++ + A G +R+KWTK+ D
Sbjct: 28 RAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSD 87
Query: 92 PLAFTDVFVALGPQHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELED 151
L DVFV++G + +G Y+GR L+G DASLV+ ++TL+DYGRY+CEV LED
Sbjct: 88 YLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLED 147
Query: 152 DAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNA 211
D +V LDL+GVVFPY PR GRY L F EAQ+AC +QD ++AS +QL+ AWR GLDWCNA
Sbjct: 148 DTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNA 207
Query: 212 GWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNL 271
GWL DGSVQYP+ +PREPC GG + G+RNYG+ + RYD FCFTSN
Sbjct: 208 GWLSDGSVQYPITKPREPC----------GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNF 257
Query: 272 PGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYP 331
GR ++L + + A +AC GA +AKVGQ+FAAWK+ DRC AGWLADGS RYP
Sbjct: 258 NGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYP 317
Query: 332 IVNPRARCGGRRPGVRSLGFPDATRRLFGVYCYRA 366
I PR RC VR +GFPD +L+GVYC+RA
Sbjct: 318 ISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRA 352
>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
sapiens]
Length = 360
Score = 341 bits (875), Expect = 6e-94
Identities = 164/320 (51%), Positives = 213/320 (66%), Gaps = 11/320 (3%)
Query: 47 VVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLA-FTDVFVALGPQ 105
+VV+T + +++G +++LPCRY YE A VR+KW K+ + A DV VA+G +
Sbjct: 49 LVVETPEETLFTYQGASVILPCRYRYEPALVSPRRVRVKWWKLSENGAPEKDVLVAIGLR 108
Query: 106 HRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVF 165
HR+FG Y+GR L+ D D SL ++++ L+DYGRY CEV + LED++G+V+L+L GVVF
Sbjct: 109 HRSFGDYQGRVHLRQDKEHDVSLEIQDLRLEDYGRYRCEVIDGLEDESGLVELELRGVVF 168
Query: 166 PYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNR 225
PY GRY+ F E Q+ CAEQ ++AS EQL AW +GLDWCNAGWL+D +VQYP+
Sbjct: 169 PYQSPNGRYQFNFHEGQQVCAEQAAVVASFEQLFRAWEEGLDWCNAGWLQDATVQYPIML 228
Query: 226 PREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVP 285
PR+PCGG G G+R+YG RH RYD FCF + L GRV++L+ +
Sbjct: 229 PRQPCGGPG----------LAPGVRSYGPRHRRLHRYDVFCFATALKGRVYYLEHPEKLT 278
Query: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
+ A AC A +AKVGQLFAAWK LDRC AGWLADGS RYP+V+P CG PG
Sbjct: 279 LTEAREACQEDDATIAKVGQLFAAWKFHGLDRCDAGWLADGSVRYPVVHPHPNCGPPEPG 338
Query: 346 VRSLGFPDATRRLFGVYCYR 365
VRS GFPD RL+GVYCYR
Sbjct: 339 VRSFGFPDPQSRLYGVYCYR 358
>gi|11141887 brain link protein-1 [Homo sapiens]
Length = 340
Score = 286 bits (733), Expect = 2e-77
Identities = 153/309 (49%), Positives = 191/309 (61%), Gaps = 20/309 (6%)
Query: 58 SHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVD-PLAFTDVFVALGPQHRAFGSYRGRA 116
SHRG T LPC ++ +++W+KV L T + + G R +G GRA
Sbjct: 47 SHRGATATLPCVLGTTPPSY-----KVRWSKVEPGELRETLILITNGLHARGYGPLGGRA 101
Query: 117 ELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKL 176
++ DASLV+ V L+D GRY CE+ N +ED++ + L LEGVVFPY P GRY+
Sbjct: 102 RMRRGHRLDASLVIAGVRLEDEGRYRCELINGIEDESVALTLSLEGVVFPYQPSRGRYQF 161
Query: 177 TFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGT 236
+ EA++AC EQDG LA+ QL+ AW +GLDWCNAGWL +GSV+YPV R PCGG G
Sbjct: 162 NYYEAKQACEEQDGRLATYSQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGRG-- 219
Query: 237 GSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAAR 296
G+R+YG R +RYDAFCFTS L G+VFF+ P R + S A AC R
Sbjct: 220 ---------RPGIRSYGPRDRMRDRYDAFCFTSALAGQVFFV-PGR-LTLSEAHAACRRR 268
Query: 297 GAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGG-RRPGVRSLGFPDAT 355
GA VAKVG L+AAWK LD+C GWLADGS R+PI PR RCGG PGVRS GFP
Sbjct: 269 GAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQ 328
Query: 356 RRLFGVYCY 364
+ +G YCY
Sbjct: 329 QAAYGTYCY 337
Score = 76.6 bits (187), Expect = 4e-14
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 175 KLTFAEAQRACAEQDGILASAEQLHAAWR-DGLDWCNAGWLRDGSVQYPVNRPREPCGGL 233
+LT +EA AC + ++A L+AAW+ GLD C+ GWL DGSV++P+ PR CGGL
Sbjct: 255 RLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGL 314
Query: 234 GGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSN 270
+ G+R++G+ + Y +C+ N
Sbjct: 315 -----------PDPGVRSFGFPRPQQAAYGTYCYAEN 340
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 222 bits (565), Expect = 5e-58
Identities = 137/372 (36%), Positives = 190/372 (51%), Gaps = 27/372 (7%)
Query: 8 LGPGALWAAAWGVLLLTAPAGAQRGRKKVVHVLEGESGSVVVQTAPGQVVSHRGGTIVLP 67
+G +WA +L + ++G + + E G + + G V + + LP
Sbjct: 1 MGAPFVWALGLLMLQMLLFVAGEQGTQDITDA--SERGLHMQKLGSGSVQAALAELVALP 58
Query: 68 CRYHYEAA-AHGHDGVRLKWTKVVDPLAFTD---VFVALGPQHRAFGSYRGRAELQG--D 121
C + + + D R+KWTKV + VA R S++GR L
Sbjct: 59 CLFTLQPRPSAARDAPRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPR 118
Query: 122 GPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEA 181
+A+L+L + D G Y C+V +ED+ +V L++ GVVF Y RY LTFAEA
Sbjct: 119 RRANATLLLGPLRASDSGLYRCQVVRGIEDEQDLVPLEVTGVVFHYRSARDRYALTFAEA 178
Query: 182 QRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGG 241
Q AC I+A+ L AA+ DG D C+AGWL D +V+YP+ + R C G
Sbjct: 179 QEACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLSDRTVRYPITQSRPGC---------YG 229
Query: 242 GGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVA 301
+ G+R+YG R N +E YD +CF L G VF++ P R + +GA C +GAA+A
Sbjct: 230 DRSSLPGVRSYG-RRNPQELYDVYCFARELGGEVFYVGPARRLTLAGARAQCRRQGAALA 288
Query: 302 KVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSL-------GFPDA 354
VGQL AW + LD+C GWLADGS RYPI PR RCGG PGVR++ GFP
Sbjct: 289 SVGQLHLAWH-EGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRTVYRFANRTGFPSP 347
Query: 355 TRRLFGVYCYRA 366
R F YC+RA
Sbjct: 348 AER-FDAYCFRA 358
Score = 81.6 bits (200), Expect = 1e-15
Identities = 48/114 (42%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 159 DLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGS 218
+L G VF P +LT A A+ C Q LAS QLH AW +GLD C+ GWL DGS
Sbjct: 257 ELGGEVFYVGPAR---RLTLAGARAQCRRQGAALASVGQLHLAWHEGLDQCDPGWLADGS 313
Query: 219 VQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLP 272
V+YP+ PR CGG A G G+ AE R+DA+CF ++ P
Sbjct: 314 VRYPIQTPRRRCGG-----PAPGVRTVYRFANRTGFPSPAE-RFDAYCFRAHHP 361
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 209 bits (532), Expect = 4e-54
Identities = 138/374 (36%), Positives = 187/374 (50%), Gaps = 41/374 (10%)
Query: 20 VLLLTAPAGAQRGRKKVVHVLEGESGSV------VVQTAPGQVVSHRGGTIVLPCRYHYE 73
++L APA + VLEG+S + AP Q V GG + +PC HY
Sbjct: 12 LVLAQAPAA-------LADVLEGDSSEDRAFRVRIAGDAPLQGVL--GGALTIPCHVHYL 62
Query: 74 AAAHGHDGV----RLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQGDGPG--DAS 127
V R+KWT + +V VA G + + +YR R L D S
Sbjct: 63 RPPPSRRAVLGSPRVKWT-FLSRGREAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVS 121
Query: 128 LVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAE 187
L L + D G Y CEV + ++D + V++ ++GVVF Y RY +F+ AQ ACA
Sbjct: 122 LALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACAR 181
Query: 188 QDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANG 247
+A+ EQL+AA+ G + C+AGWL D +V+YP+ PRE C G D
Sbjct: 182 IGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREAC---------YGDMDGFP 232
Query: 248 GLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLF 307
G+RNYG + ++ YD +C+ +L G +F P + A C RGA +A GQL+
Sbjct: 233 GVRNYGV-VDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIATTGQLY 291
Query: 308 AAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSL-------GFPDATRRLFG 360
AAW LD C+ GWLADGS RYPIV P RCGG PGV++L GFP+ R F
Sbjct: 292 AAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFLFPNQTGFPNKHSR-FN 349
Query: 361 VYCYRAPGAPDPAP 374
VYC+R P P
Sbjct: 350 VYCFRDSAQPSAIP 363
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 209 bits (532), Expect = 4e-54
Identities = 138/374 (36%), Positives = 187/374 (50%), Gaps = 41/374 (10%)
Query: 20 VLLLTAPAGAQRGRKKVVHVLEGESGSV------VVQTAPGQVVSHRGGTIVLPCRYHYE 73
++L APA + VLEG+S + AP Q V GG + +PC HY
Sbjct: 12 LVLAQAPAA-------LADVLEGDSSEDRAFRVRIAGDAPLQGVL--GGALTIPCHVHYL 62
Query: 74 AAAHGHDGV----RLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQGDGPG--DAS 127
V R+KWT + +V VA G + + +YR R L D S
Sbjct: 63 RPPPSRRAVLGSPRVKWT-FLSRGREAEVLVARGVRVKVNEAYRFRVALPAYPASLTDVS 121
Query: 128 LVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAE 187
L L + D G Y CEV + ++D + V++ ++GVVF Y RY +F+ AQ ACA
Sbjct: 122 LALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSARYAFSFSGAQEACAR 181
Query: 188 QDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANG 247
+A+ EQL+AA+ G + C+AGWL D +V+YP+ PRE C G D
Sbjct: 182 IGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREAC---------YGDMDGFP 232
Query: 248 GLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLF 307
G+RNYG + ++ YD +C+ +L G +F P + A C RGA +A GQL+
Sbjct: 233 GVRNYGV-VDPDDLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIATTGQLY 291
Query: 308 AAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSL-------GFPDATRRLFG 360
AAW LD C+ GWLADGS RYPIV P RCGG PGV++L GFP+ R F
Sbjct: 292 AAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFLFPNQTGFPNKHSR-FN 349
Query: 361 VYCYRAPGAPDPAP 374
VYC+R P P
Sbjct: 350 VYCFRDSAQPSAIP 363
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 194 bits (492), Expect = 2e-49
Identities = 120/324 (37%), Positives = 170/324 (52%), Gaps = 30/324 (9%)
Query: 62 GTIVLPCRYH----YEAAAHGHDGVRLKWTKV-VDP----LAFTDVFVALGPQHRAFGSY 112
G + LPC + + + + +R+KW+K+ VD L T V VA + Y
Sbjct: 38 GKVSLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDY 97
Query: 113 RGRAEL--QGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPR 170
+GR + + GDASL + + D G Y C+V +ED V L ++GVVF Y
Sbjct: 98 KGRVSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAA 157
Query: 171 GGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPC 230
RY L F AQ+AC + ++A+ EQL AA+ DG + C+AGWL D +V+YP+ PR C
Sbjct: 158 TSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGC 217
Query: 231 GGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAA 290
G G A G+R YG+R + +E YD +C+ +L G VF L F AA
Sbjct: 218 YG-DKMGKA--------GVRTYGFR-SPQETYDVYCYVDHLDGDVFHLTVPSKFTFEEAA 267
Query: 291 RACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSL- 349
+ C + A +A VG+L AAW+ D+C GWL+D S R+P+ RA+CGG GVR+L
Sbjct: 268 KECENQDARLATVGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLY 326
Query: 350 ------GFPDATRRLFGVYCYRAP 367
GFP R F YC++ P
Sbjct: 327 RFENQTGFPPPDSR-FDAYCFKRP 349
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 191 bits (486), Expect = 8e-49
Identities = 119/322 (36%), Positives = 169/322 (52%), Gaps = 30/322 (9%)
Query: 62 GTIVLPCRYH----YEAAAHGHDGVRLKWTKV-VDP----LAFTDVFVALGPQHRAFGSY 112
G + LPC + + + + +R+KW+K+ VD L T V VA + Y
Sbjct: 38 GKVSLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDY 97
Query: 113 RGRAEL--QGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFPYHPR 170
+GR + + GDASL + + D G Y C+V +ED V L ++GVVF Y
Sbjct: 98 KGRVSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAA 157
Query: 171 GGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPC 230
RY L F AQ+AC + ++A+ EQL AA+ DG + C+AGWL D +V+YP+ PR C
Sbjct: 158 TSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGC 217
Query: 231 GGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSGAA 290
G G A G+R YG+R + +E YD +C+ +L G VF L F AA
Sbjct: 218 YG-DKMGKA--------GVRTYGFR-SPQETYDVYCYVDHLDGDVFHLTVPSKFTFEEAA 267
Query: 291 RACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPGVRSL- 349
+ C + A +A VG+L AAW+ D+C GWL+D S R+P+ RA+CGG GVR+L
Sbjct: 268 KECENQDARLATVGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLY 326
Query: 350 ------GFPDATRRLFGVYCYR 365
GFP R F YC++
Sbjct: 327 RFENQTGFPPPDSR-FDAYCFK 347
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 189 bits (481), Expect = 3e-48
Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 22/307 (7%)
Query: 83 RLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQGDG--PGDASLVLRNVTLQDYGR 140
R+KW++V + VA + R +Y+ + L P DA+L ++++ D G
Sbjct: 72 RIKWSRVSKEKEVV-LLVATEGRVRVNSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSGV 130
Query: 141 YECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHA 200
Y CEV + +ED +++ ++G+VF Y RY L F AQRAC + I+A+ EQL A
Sbjct: 131 YRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQA 190
Query: 201 AWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEE 260
A+ DG C+AGWL D +V+YP++ PRE C G D G+R YG R + E
Sbjct: 191 AYEDGFHQCDAGWLADQTVRYPIHTPREGC---------YGDKDEFPGVRTYGIR-DTNE 240
Query: 261 RYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTA 320
YD +CF + G VF+ F AA C GA +A GQL+ AW+ +D C+A
Sbjct: 241 TYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRRLGARLATTGQLYLAWQAG-MDMCSA 299
Query: 321 GWLADGSARYPIVNPRARCGGRRPGVRSL-------GFPDATRRLFGVYCYRAPGAPDPA 373
GWLAD S RYPI R CGG GVR++ G+PD + R + CY D
Sbjct: 300 GWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSR-YDAICYTGEDFVDIP 358
Query: 374 PGGWGWG 380
+G G
Sbjct: 359 ENFFGVG 365
Score = 185 bits (470), Expect = 6e-47
Identities = 102/221 (46%), Positives = 127/221 (57%), Gaps = 20/221 (9%)
Query: 162 GVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQY 221
GVVF Y P RY LTF EAQ+AC ++AS EQL AA+ G + C+AGWLRD +V+Y
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 222 PVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPL 281
P+ PR PC G D++ G+R YG R + E YD +CF L G VFF L
Sbjct: 537 PIVSPRTPC---------VGDKDSSPGVRTYGVRPST-ETYDVYCFVDRLEGEVFFATRL 586
Query: 282 RPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGG 341
F A C + A +A GQL+AAW + LD+C AGWLADGS RYPIV PR CGG
Sbjct: 587 EQFTFQEALEFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGG 645
Query: 342 RRPGVRSL-------GFPDATRRLFGVYCYRAPGAPDPAPG 375
+PGVR++ G PD R +C+R A P+PG
Sbjct: 646 DKPGVRTVYLYPNQTGLPDPLSR-HHAFCFRGISAV-PSPG 684
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 189 bits (481), Expect = 3e-48
Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 22/307 (7%)
Query: 83 RLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQGDG--PGDASLVLRNVTLQDYGR 140
R+KW++V + VA + R +Y+ + L P DA+L ++++ D G
Sbjct: 72 RIKWSRVSKEKEVV-LLVATEGRVRVNSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSGV 130
Query: 141 YECEVTNELEDDAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHA 200
Y CEV + +ED +++ ++G+VF Y RY L F AQRAC + I+A+ EQL A
Sbjct: 131 YRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQA 190
Query: 201 AWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEE 260
A+ DG C+AGWL D +V+YP++ PRE C G D G+R YG R + E
Sbjct: 191 AYEDGFHQCDAGWLADQTVRYPIHTPREGC---------YGDKDEFPGVRTYGIR-DTNE 240
Query: 261 RYDAFCFTSNLPGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTA 320
YD +CF + G VF+ F AA C GA +A GQL+ AW+ +D C+A
Sbjct: 241 TYDVYCFAEEMEGEVFYATSPEKFTFQEAANECRRLGARLATTGQLYLAWQAG-MDMCSA 299
Query: 321 GWLADGSARYPIVNPRARCGGRRPGVRSL-------GFPDATRRLFGVYCYRAPGAPDPA 373
GWLAD S RYPI R CGG GVR++ G+PD + R + CY D
Sbjct: 300 GWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSR-YDAICYTGEDFVDIP 358
Query: 374 PGGWGWG 380
+G G
Sbjct: 359 ENFFGVG 365
Score = 185 bits (470), Expect = 6e-47
Identities = 102/221 (46%), Positives = 127/221 (57%), Gaps = 20/221 (9%)
Query: 162 GVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQY 221
GVVF Y P RY LTF EAQ+AC ++AS EQL AA+ G + C+AGWLRD +V+Y
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 222 PVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPL 281
P+ PR PC G D++ G+R YG R + E YD +CF L G VFF L
Sbjct: 537 PIVSPRTPC---------VGDKDSSPGVRTYGVRPST-ETYDVYCFVDRLEGEVFFATRL 586
Query: 282 RPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGG 341
F A C + A +A GQL+AAW + LD+C AGWLADGS RYPIV PR CGG
Sbjct: 587 EQFTFQEALEFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGG 645
Query: 342 RRPGVRSL-------GFPDATRRLFGVYCYRAPGAPDPAPG 375
+PGVR++ G PD R +C+R A P+PG
Sbjct: 646 DKPGVRTVYLYPNQTGLPDPLSR-HHAFCFRGISAV-PSPG 684
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 77.8 bits (190), Expect = 2e-14
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 14/110 (12%)
Query: 160 LEGVVFPYH--PRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDG 217
LE YH R G+YKLT+AEA+ C + G LA+ +QL AA + G C AGW+ G
Sbjct: 31 LERAAGVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKG 90
Query: 218 SVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCF 267
V YP+ +P C G G T G+ +YG R N ER+DA+C+
Sbjct: 91 RVGYPIVKPGPNC-GFGKT-----------GIIDYGIRLNRSERWDAYCY 128
Score = 47.8 bits (112), Expect = 2e-05
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
++ A C G +A QL AA K+ C AGW+A G YPIV P CG + G
Sbjct: 51 YAEAKAVCEFEGGHLATYKQLEAARKIGF-HVCAAGWMAKGRVGYPIVKPGPNCGFGKTG 109
Query: 346 VRSLGFPDATRRLFGVYCY 364
+ G + YCY
Sbjct: 110 IIDYGIRLNRSERWDAYCY 128
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 69.3 bits (168), Expect = 6e-12
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 164 VFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPV 223
VF G Y L F+EA+ AC Q +LAS QL AA + G C GWL +GS +PV
Sbjct: 2209 VFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGWLANGSTAHPV 2268
Query: 224 NRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCF 267
P C G+ G+ + G R N ER+DA+CF
Sbjct: 2269 VFPVADC------------GNGRVGIVSLGARKNLSERWDAYCF 2300
Score = 62.4 bits (150), Expect = 7e-10
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
FS A AC A+GA +A QL AA +L C GWLA+GS +P+V P A CG R G
Sbjct: 2223 FSEAEAACEAQGAVLASFPQLSAAQQLGF-HLCLMGWLANGSTAHPVVFPVADCGNGRVG 2281
Query: 346 VRSLGFPDATRRLFGVYCYR 365
+ SLG + YC+R
Sbjct: 2282 IVSLGARKNLSERWDAYCFR 2301
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 62.8 bits (151), Expect = 5e-10
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 152 DAGMVKLDLEGV-VFPYHPRG--GRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDW 208
DA V L + V +H R G+YKLTF +A+ ACA + +A+ QL A +
Sbjct: 2184 DAKCVDLHFQDTTVGVFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHL 2243
Query: 209 CNAGWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCF 267
C+AGWL G V YP + C G G+ +YG R N E +D FC+
Sbjct: 2244 CSAGWLETGRVAYPTAFASQNC------------GSGVVGIVDYGPRPNKSEMWDVFCY 2290
Score = 45.8 bits (107), Expect = 7e-05
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
F A ACA A +A QL A K + C+AGWL G YP CG G
Sbjct: 2213 FDKAREACANEAATMATYNQLSYAQKAKY-HLCSAGWLETGRVAYPTAFASQNCGSGVVG 2271
Query: 346 VRSLGFPDATRRLFGVYCYR 365
+ G ++ V+CYR
Sbjct: 2272 IVDYGPRPNKSEMWDVFCYR 2291
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 42.4 bits (98), Expect = 8e-04
Identities = 50/174 (28%), Positives = 62/174 (35%), Gaps = 36/174 (20%)
Query: 229 PCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNLPGRVFFLKPLRPVPFSG 288
P GG GG GS+GGGG A GG Y + C RP P +G
Sbjct: 18 PGGGGGGGGSSGGGGGAGGG-------------YSSAC---------------RPGPRAG 49
Query: 289 AARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGG-RRPGVR 347
A A AA G A L K Q + + ++P R P R
Sbjct: 50 GAAAAAACGGGAAL--GLLPPGKTQSPESLLDIAARRVAEKWPFQRVEERFERIPEPVQR 107
Query: 348 SL---GFPDATRRLFGVYCYRAPGAPDPAPG--GWGWGWAGGGGWAGGARDPAA 396
+ FP + R + + G PG G G AGGGG G + PAA
Sbjct: 108 RIVYWSFPRSEREICMYSSFNTGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAA 161
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 286 FSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYPIVNPRARCGGRRPG 345
F+ A AC G ++A Q+ A K + C+ GW+ DG ++P +CG + G
Sbjct: 54 FTEAKEACRLLGLSLAGKDQVETALKASF-ETCSYGWVGDGFVVISRISPNPKCG--KNG 110
Query: 346 VRSLGFPDATRRLFGVYCYRA 366
V L + R F YCY +
Sbjct: 111 VGVLIWKVPVSRQFAAYCYNS 131
Score = 37.7 bits (86), Expect = 0.019
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 175 KLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNAGWLRDGSVQYPVNRPREPCGGLG 234
+L F EA+ AC LA +Q+ A + + C+ GW+ DG V P CG G
Sbjct: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKASFETCSYGWVGDGFVVISRISPNPKCGKNG 110
>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 53 PGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSY 112
P V G + LPC Y G+ V +KW T H Y
Sbjct: 26 PESVTGPWKGDVNLPCTYD---PLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKY 82
Query: 113 RGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVK 157
+GR + PGD SL L + + D Y CEVT + D +V+
Sbjct: 83 QGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVR 127
>gi|6005958 V-set and immunoglobulin domain containing 4 isoform 1
[Homo sapiens]
Length = 399
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 53 PGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSY 112
P V G + LPC Y G+ V +KW T H Y
Sbjct: 26 PESVTGPWKGDVNLPCTYD---PLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKY 82
Query: 113 RGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVK 157
+GR + PGD SL L + + D Y CEVT + D +V+
Sbjct: 83 QGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVVR 127
>gi|33519481 neural cell adhesion molecule 2 precursor [Homo
sapiens]
Length = 837
Score = 42.0 bits (97), Expect = 0.001
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 58 SHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAE 117
++ G + L C A G + W + VD FT+ +L GR E
Sbjct: 312 TYENGQVTLVCD------AEGEPIPEITWKRAVDGFTFTEGDKSLD----------GRIE 355
Query: 118 LQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLE 161
++G G +SL +++V L D GRY+CE + + + LD+E
Sbjct: 356 VKGQH-GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 398
>gi|62865876 immunoglobulin superfamily, member 11 isoform b [Homo
sapiens]
Length = 431
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 40 LEGESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTD-- 97
L G + S+ V +PG + RG VLPC + AA + L +V PL+ +
Sbjct: 16 LHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAAL-----INLNVIWMVTPLSNANQP 70
Query: 98 ---VFVALGPQHRAFGSYRGRAELQGDGPG-DASLVLRNVTLQDYGRYECEVTN 147
+ G + GR G P + S+ + N L D G Y+C V N
Sbjct: 71 EQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNN 124
>gi|62865874 immunoglobulin superfamily, member 11 isoform a [Homo
sapiens]
Length = 430
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 42 GESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTD---- 97
G + S+ V +PG + RG VLPC + AA + L +V PL+ +
Sbjct: 17 GVAASLEVSESPGSIQVARGQPAVLPCTFTTSAAL-----INLNVIWMVTPLSNANQPEQ 71
Query: 98 -VFVALGPQHRAFGSYRGRAELQGDGPG-DASLVLRNVTLQDYGRYECEVTN 147
+ G + GR G P + S+ + N L D G Y+C V N
Sbjct: 72 VILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNN 123
>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
Length = 319
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 46 SVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQ 105
++ V+T + + +G ++ LPC YH ++ +G+ ++W K++ V +
Sbjct: 21 AISVETPQDVLRASQGKSVTLPCTYHTSTSSR--EGL-IQWDKLLLTHTERVVIWPFSNK 77
Query: 106 HRAFGS-YRGRAELQGDGP-GDASLVLRNVTLQDYGRYECEVT 146
+ G Y+ R + + DAS+ + +T+ D G YEC V+
Sbjct: 78 NYIHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVS 120
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 38.9 bits (89), Expect = 0.008
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 36 VVHVLEGESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWT----KVVD 91
++ L G+ V V G V G + L C Y A+ + + ++W+ K ++
Sbjct: 11 ILSCLAGQVSVVQVTIPDGFVNVTVGSNVTLICIYTTTVASR--EQLSIQWSFFHKKEME 68
Query: 92 PLAFTDVFVALGPQHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTN 147
P++ ++ + G Q A G ++ R D PG+AS+ + ++ D G Y C+V N
Sbjct: 69 PIS---IYFSQGGQAVAIGQFKDRITGSND-PGNASITISHMQPADSGIYICDVNN 120
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 38.1 bits (87), Expect = 0.014
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 105 QHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGM 155
+ A + +GR L+ PG L ++NV +QD G Y C V L +GM
Sbjct: 900 EQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCHVEEWLPSPSGM 950
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 38.1 bits (87), Expect = 0.014
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 105 QHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGM 155
+ A + +GR L+ PG L ++NV +QD G Y C V L +GM
Sbjct: 880 EQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCHVEEWLPSPSGM 930
>gi|122937309 leucine rich repeat containing 4B [Homo sapiens]
Length = 713
Score = 36.6 bits (83), Expect = 0.041
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 110 GSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGV 163
GSYR R + DG +L NVT+QD G+Y C VTN + L++ V
Sbjct: 407 GSYRVRISVLHDG----TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVSAV 456
>gi|8393638 F11 receptor precursor [Homo sapiens]
Length = 299
Score = 35.0 bits (79), Expect = 0.12
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 35/171 (20%)
Query: 45 GSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGP 104
GSV V ++ +V + L C Y G R++W D +
Sbjct: 27 GSVTVHSSEPEVRIPENNPVKLSCAYS------GFSSPRVEWK-----FDQGDTTRLVCY 75
Query: 105 QHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVV 164
++ SY R G + ++VT +D G Y C V+ E + G VK+ L +V
Sbjct: 76 NNKITASYEDRVTFLPTG-----ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV 130
Query: 165 FPYHPR---------GGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGL 206
P P G R LT C+EQDG S + ++DG+
Sbjct: 131 PPSKPTVNIPSSATIGNRAVLT-------CSEQDG---SPPSEYTWFKDGI 171
>gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens]
Length = 301
Score = 35.0 bits (79), Expect = 0.12
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 61 GGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQG 120
G LPC Y AA G+ V + W K P+ F V L R + R L G
Sbjct: 31 GQNAYLPC--FYTPAAPGNL-VPVCWGKGACPV-FECGNVVLRTDERDVNYWTSRYWLNG 86
Query: 121 D-GPGDASLVLRNVTLQDYGRYECEV 145
D GD SL + NVTL D G Y C +
Sbjct: 87 DFRKGDVSLTIENVTLADSGIYCCRI 112
>gi|54607118 leucine-rich repeats and immunoglobulin-like domains 1
[Homo sapiens]
Length = 1093
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 26/89 (29%)
Query: 61 GGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSYRGRAELQG 120
G T+ L C+ A G+ R+ W K PL+ T+ R L
Sbjct: 707 GETVALQCK------ATGNPPPRITWFKGDRPLSLTE-----------------RHHLT- 742
Query: 121 DGPGDASLVLRNVTLQDYGRYECEVTNEL 149
P + LV++NV +D GRY CE++N L
Sbjct: 743 --PDNQLLVVQNVVAEDAGRYTCEMSNTL 769
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 53 PGQVVSHRGGTIVLPCRYHYEAAAHGHDGVRLKWTKVVDPLAFTDVFVALGPQHRAFGSY 112
P ++ G T+ L C Y E H R W + + F+ + + +
Sbjct: 22 PEEISGFEGDTVSLQCTYREELRDH-----RKYWCRK-GGILFSRCSGTIYAEEEGQETM 75
Query: 113 RGRAELQGDGPGDASLV--LRNVTLQDYGRYECEVTNELEDDAGMVKLDLEGVVFP 166
+GR ++ D + SL+ L N+TLQD G Y C V D++ ++ L VFP
Sbjct: 76 KGRVSIR-DSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISL----FVFP 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,016,474
Number of Sequences: 37866
Number of extensions: 989110
Number of successful extensions: 7517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 6048
Number of HSP's gapped (non-prelim): 1355
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.