Guide to the Human Genome
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Name: HAVCR2 Sequence: fasta or formatted (301aa) NCBI GI: 49574534
Description:

T cell immunoglobulin mucin 3

Referenced in:

Additional Immunoglobulin-related Receptors
Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         24           2
 C cysteine            3.3         10           2
 D aspartate           4.0         12           1
 E glutamate           6.3         19           2
 F phenylalanine       3.7         11           1
 G glycine             7.0         21           1
 H histidine           1.0          3           1
 I isoleucine          6.6         20           1
 K lysine              3.0          9           1
 L leucine            11.6         35           8
 M methionine          1.3          4           1
 N asparagine          5.6         17           1
 P proline             6.3         19           2
 Q glutamine           3.0          9           2
 R arginine            6.0         18           1
 S serine              6.3         19           2
 T threonine           5.6         17           2
 V valine              5.6         17           2
 W tryptophan          1.3          4           1
 Y tyrosine            4.3         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T cell immunoglobulin mucin 3 
HAVCR1                0.130   hepatitis A virus cellular receptor 1 
HAVCR1                0.130   hepatitis A virus cellular receptor 1 
TIMD4                 0.120   T-cell immunoglobulin and mucin domain containing 4...
TIMD4                 0.120   T-cell immunoglobulin and mucin domain containing 4...
BTN2A2                0.042   butyrophilin, subfamily 2, member A2 isoform a 
SIGLEC15              0.034   sialic acid binding Ig-like lectin 15 
NCR2                  0.034   natural cytotoxicity triggering receptor 2 
CXADR                 0.032   coxsackie virus and adenovirus receptor precursor [Ho...
BTNL2                 0.032   butyrophilin-like 2 
BTN2A1                0.029   butyrophilin, subfamily 2, member A1 isoform 1 precur...
BTN2A1                0.029   butyrophilin, subfamily 2, member A1 isoform 2 precu...
BTN3A1                0.027   butyrophilin, subfamily 3, member A1 isoform b [Homo...
BTN3A1                0.027   butyrophilin, subfamily 3, member A1 isoform d [Hom...
BTN3A1                0.027   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.027   butyrophilin, subfamily 3, member A1 isoform a [Homo...
VSIG1                 0.024   V-set and immunoglobulin domain containing 1 
GPA33                 0.022   transmembrane glycoprotein A33 precursor 
BTNL8                 0.020   butyrophilin-like 8 isoform 4 precursor 
BTNL8                 0.020   butyrophilin-like 8 isoform 2 precursor 
BTNL8                 0.020   butyrophilin-like 8 isoform 1 precursor 
BTN3A2                0.020   butyrophilin, subfamily 3, member A2 precursor [Homo...
KIRREL2               0.020   kin of IRRE-like 2 isoform c 
KIRREL2               0.020   kin of IRRE-like 2 isoform a 
BTN1A1                0.020   butyrophilin, subfamily 1, member A1 
SIRPD                 0.020   signal-regulatory protein delta 
BTN3A3                0.019   butyrophilin, subfamily 3, member A3 isoform a 
TIE1                  0.017   tyrosine kinase with immunoglobulin-like and EGF-like...
HAPLN4                0.017   hyaluronan and proteoglycan link protein 4 
BTN3A3                0.017   butyrophilin, subfamily 3, member A3 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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